Publications 2018

 

Rydning SL, Dudesek A, Rimmele F, Funke C, Krüger S, Biskup S, Vigeland MD, Hjorthaug HS, Sejersted Y, Tallaksen C, Selmer KK, Kamm C. 2018. A novel heterozygous variant in ERLIN2 causes autosomal dominant pure hereditary spastic paraplegia. Eur J Neurol 25: 943-e71.
doi: 10.1111/ene.13625 PMID:29528531

Wang S, Singh SK, Katika MR, Lopez-Aviles S, Hurtado A. 2018. High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines. Int J Mol Sci 19.
doi: 10.3390/ijms19124123 PMID:30572598

Palma M, Krstic A, Peña Perez L, Berglöf A, Meinke S, Wang Q, Blomberg KEM, Kamali-Moghaddam M, Shen Q, Jaremko G, Lundin J, De Paepe A, Höglund P, Kimby E, Österborg A, Månsson R, Smith CIE. 2018. Ibrutinib induces rapid down-regulation of inflammatory markers and altered transcription of chronic lymphocytic leukaemia-related genes in blood and lymph nodes. Br J Haematol 183: 212-224.
doi: 10.1111/bjh.15516 PMID:30125946

Riiser ES, Haverkamp THA, Borgan Ø, Jakobsen KS, Jentoft S, Star B. 2018. A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal Microbiome in Two Geographically Separated Atlantic cod Populations. Front Microbiol 9: 1561.
doi: 10.3389/fmicb.2018.01561 PMID:30057577

Gulla S, Barnes AC, Welch TJ, Romalde JL, Ryder D, Ormsby MJ, Carson J, Lagesen K, Verner-Jeffreys DW, Davies RL, Colquhoun DJ. 2018. Multilocus Variable-Number Tandem-Repeat Analysis of Yersinia ruckeri Confirms the Existence of Host Specificity, Geographic Endemism, and Anthropogenic Dissemination of Virulent Clones. Appl Environ Microbiol 84.
doi: 10.1128/AEM.00730-18 PMID:29884756

Poulsen LC, Edelmann RJ, Krüger S, Diéguez-Hurtado R, Shah A, Stav-Noraas TE, Renzi A, Szymanska M, Wang J, Ehling M, Benedito R, Kasprzycka M, Bækkevold E, Sundnes O, Midwood KS, Scott H, Collas P, Siebel CW, Adams RH, Haraldsen G, Sundlisæter E, Hol J. 2018. Inhibition of Endothelial NOTCH1 Signaling Attenuates Inflammation by Reducing Cytokine-Mediated Histone Acetylation at Inflammatory Enhancers. Arterioscler Thromb Vasc Biol 38: 854-869.
doi: 10.1161/ATVBAHA.117.310388 PMID:29449332

Richter L, Landsverk OJB, Atlasy N, Bujko A, Yaqub S, Horneland R, Øyen O, Aandahl EM, Lundin KEA, Stunnenberg HG, Bækkevold ES, Jahnsen FL. 2018. Transcriptional profiling reveals monocyte-related macrophages phenotypically resembling DC in human intestine. Mucosal Immunol 11: 1512-1523.
doi: 10.1038/s41385-018-0060-1 PMID:30038215

Horn SS, Ruyter B, Meuwissen THE, Hillestad B, Sonesson AK. 2018. Genetic effects of fatty acid composition in muscle of Atlantic salmon. Genet Sel Evol 50: 23.
doi: 10.1186/s12711-018-0394-x PMID:29720078

Eguíluz-Gracia I, Malmstrom K, Dheyauldeen SA, Lohi J, Sajantila A, Aaløkken R, Sundaram AYM, Gilfillan GD, Makela M, Baekkevold ES, Jahnsen FL. 2018. Monocytes accumulate in the airways of children with fatal asthma. Clin Exp Allergy 48: 1631-1639.
doi: 10.1111/cea.13265 PMID:30184280

Anslan S, Nilsson RH, Wurzbacher C, Baldrian P, Leho Tedersoo, Bahram M. 2018. Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. MycoKeys.
doi: 10.3897/mycokeys.39.28109 PMID:30271256

Storesund JE, Lanzèn A, García-Moyano A, Reysenbach AL, Øvreås L. 2018. Diversity patterns and isolation of Planctomycetes associated with metalliferous deposits from hydrothermal vent fields along the Valu Fa Ridge (SW Pacific). Antonie Van Leeuwenhoek 111: 841-858.
doi: 10.1007/s10482-018-1026-8 PMID:29423768

Vander Roost J, Daae FL, Steen IH, Thorseth IH, Dahle H. 2018. Distribution Patterns of Iron-Oxidizing Zeta- and Beta-Proteobacteria From Different Environmental Settings at the Jan Mayen Vent Fields. Front Microbiol 9: 3008.
doi: 10.3389/fmicb.2018.03008 PMID:30574135

Dahle H, Le Moine Bauer S, Baumberger T, Stokke R, Pedersen RB, Thorseth IH, Steen IH. 2018. Energy Landscapes in Hydrothermal Chimneys Shape Distributions of Primary Producers. Front Microbiol 9: 1570.
doi: 10.3389/fmicb.2018.01570 PMID:30061874

Le Moine Bauer S, Stensland A, Daae FL, Sandaa RA, Thorseth IH, Steen IH, Dahle H. 2018. Water Masses and Depth Structure Prokaryotic and T4-Like Viral Communities Around Hydrothermal Systems of the Nordic Seas. Front Microbiol 9: 1002.
doi: 10.3389/fmicb.2018.01002 PMID:29904373

Kjærner-Semb E, Ayllon F, Kleppe L, Sørhus E, Skaftnesmo K, Furmanek T, Segafredo FT, Thorsen A, Fjelldal PG, Hansen T, Taranger GL, Andersson E, Schulz RW, Wargelius A, Edvardsen RB. 2018. Vgll3 and the Hippo pathway are regulated in Sertoli cells upon entry and during puberty in Atlantic salmon testis. Sci Rep 8: 1912.
doi: 10.1038/s41598-018-20308-1 PMID:29382956

Sommer C, Lee S, Gulseth HL, Jensen J, Drevon CA, Birkeland KI. 2018. Soluble Leptin Receptor Predicts Insulin Sensitivity and Correlates With Upregulation of Metabolic Pathways in Men. J Clin Endocrinol Metab 103: 1024-1032.
doi: 10.1210/jc.2017-02126 PMID:29300960

Santoro F, Pettini E, Kazmin D, Ciabattini A, Fiorino F, Gilfillan GD, Evenroed IM, Andersen P, Pozzi G, Medaglini D. 2018. Transcriptomics of the Vaccine Immune Response: Priming With Adjuvant Modulates Recall Innate Responses After Boosting. Front Immunol 9: 1248.
doi: 10.3389/fimmu.2018.01248 PMID:29922291

Rounge TB, Umu SU, Keller A, Meese E, Ursin G, Tretli S, Lyle R, Langseth H. 2018. Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity. Sci Rep 8: 17650.
doi: 10.1038/s41598-018-35974-4 PMID:30518766

Kunath BJ, Delogu F, Naas AE, Arntzen MØ, Eijsink VGH, Henrissat B, Hvidsten TR, Pope PB. 2019. From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. ISME J 13: 603-617.
doi: 10.1038/s41396-018-0290-y PMID:30315317

Müller O, Seuthe L, Bratbak G, Paulsen ML. 2018. Bacterial Response to Permafrost Derived Organic Matter Input in an Arctic Fjord. Front Mar Sci 5.
doi: 10.3389/fmars.2018.00263

Schouw A, Vulcano F, Roalkvam I, Hocking WP, Reeves E, Stokke R, Bødtker G, Steen IH. 2018. Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System. Microorganisms 6.
doi: 10.3390/microorganisms6030063 PMID:29973550

Kintses B, Méhi O, Ari E, Számel M, Györkei Á, Jangir PK, Nagy I, Pál F, Fekete G, Tengölics R, Nyerges Á, Likó I, Bálint A, Molnár T, Bálint B, Vásárhelyi BM, Bustamante M, Papp B, Pál C. 2019. Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota. Nat Microbiol 4: 447-458.
doi: 10.1038/s41564-018-0313-5 PMID:30559406

Vestrum RI, Attramadal KJK, Winge P, Li K, Olsen Y, Bones AM, Vadstein O, Bakke I. 2018. Rearing Water Treatment Induces Microbial Selection Influencing the Microbiota and Pathogen Associated Transcripts of Cod (Gadus morhua) Larvae. Front Microbiol 9: 851.
doi: 10.3389/fmicb.2018.00851 PMID:29765364

Margos G, Gofton A, Wibberg D, Dangel A, Marosevic D, Loh SM, Oskam C, Fingerle V. 2018. The genus Borrelia reloaded. PLoS One 13: e0208432.
doi: 10.1371/journal.pone.0208432 PMID:30586413

Sandaa RA, E Storesund J, Olesin E, Lund Paulsen M, Larsen A, Bratbak G, Ray JL. 2018. Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host⁻Viral Relationships in an Arctic Marine Ecosystem. Viruses 10.
doi: 10.3390/v10120715 PMID:30558156

Hoel H, Hove-Skovsgaard M, Hov JR, Gaardbo JC, Holm K, Kummen M, Rudi K, Nwosu F, Valeur J, Gelpi M, Seljeflot I, Ueland PM, Gerstoft J, Ullum H, Aukrust P, Nielsen SD, Trøseid M. 2018. Impact of HIV and Type 2 diabetes on Gut Microbiota Diversity, Tryptophan Catabolism and Endothelial Dysfunction. Sci Rep 8: 6725.
doi: 10.1038/s41598-018-25168-3 PMID:29712976

Arnbjerg CJ, Vestad B, Hov JR, Pedersen KK, Jespersen S, Johannesen HH, Holm K, Halvorsen B, Fallentin E, Hansen AE, Lange T, Kjær A, Trøseid M, Fischer BM, Nielsen SD. 2018. Effect of Lactobacillus rhamnosus GG Supplementation on Intestinal Inflammation Assessed by PET/MRI Scans and Gut Microbiota Composition in HIV-Infected Individuals. J Acquir Immune Defic Syndr 78: 450-457.
doi: 10.1097/QAI.0000000000001693 PMID:29874201

Mattingsdal M, Jentoft S, Tørresen OK, Knutsen H, Hansen MM, Robalo JI, Zagrodzka Z, André C, Gonzalez EB. 2018. A continuous genome assembly of the corkwing wrasse (Symphodus melops). Genomics 110: 399-403.
doi: 10.1016/j.ygeno.2018.04.009 PMID:29665418

Jin Y, Olsen RE, Østensen MA, Gillard GB, Korsvoll SA, Santi N, Gjuvsland AB, Vik JO, Torgersen JS, Sandve SR, Olsen Y. 2018. Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry. BMC Genomics 19: 253.
doi: 10.1186/s12864-018-4651-8 PMID:29661132

Avershina E, Angell IL, Simpson M, Storrø O, Øien T, Johnsen R, Rudi K. 2018. Low Maternal Microbiota Sharing across Gut, Breast Milk and Vagina, as Revealed by 16S rRNA Gene and Reduced Metagenomic Sequencing. Genes (Basel) 9.
doi: 10.3390/genes9050231 PMID:29724017

Yao Y, Zia A, Wyrożemski Ł, Lindeman I, Sandve GK, Qiao SW. 2018. Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. PLoS One 13: e0208484.
doi: 10.1371/journal.pone.0208484 PMID:30517183

Varadharajan S, Sandve SR, Gillard GB, Tørresen OK, Mulugeta TD, Hvidsten TR, Lien S, Asbjørn Vøllestad L, Jentoft S, Nederbragt AJ, Jakobsen KS. 2018. The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication. Genome Biol Evol 10: 2785-2800.
doi: 10.1093/gbe/evy201 PMID:30239729

Trosvik P, de Muinck EJ, Rueness EK, Fashing PJ, Beierschmitt EC, Callingham KR, Kraus JB, Trew TH, Moges A, Mekonnen A, Venkataraman VV, Nguyen N. 2018. Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate. Microbiome 6: 84.
doi: 10.1186/s40168-018-0468-6 PMID:29729671

Star B, Barrett JH, Gondek AT, Boessenkool S. 2018. Ancient DNA reveals the chronology of walrus ivory trade from Norse Greenland. Proc Biol Sci 285.
doi: 10.1098/rspb.2018.0978 PMID:30089624

Wrobel A, Ottoni C, Leo JC, Linke D. 2018. pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System. Front Cell Infect Microbiol 8: 373.
doi: 10.3389/fcimb.2018.00373 PMID:30460204

Malmstrøm M, Britz R, Matschiner M, Tørresen OK, Hadiaty RK, Yaakob N, Tan HH, Jakobsen KS, Salzburger W, Rüber L. 2018. The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes. Genome Biol Evol 10: 1088-1103.
doi: 10.1093/gbe/evy058 PMID:29684203

Langangen Ø, Färber L, Stige LC, Diekert FK, Barth JMI, Matschiner M, Berg PR, Star B, Stenseth NC, Jentoft S, Durant JM. 2019. Ticket to spawn: Combining economic and genetic data to evaluate the effect of climate and demographic structure on spawning distribution in Atlantic cod. Glob Chang Biol 25: 134-143.
doi: 10.1111/gcb.14474 PMID:30300937

Liu X, Luo Y, Li Z, Wei G. 2018. Functional Analysis of a Putative Type III Secretion System in Stress Adaption by Mesorhizobium alhagi CCNWXJ12-2T. Front Microbiol 9: 263.
doi: 10.3389/fmicb.2018.00263 PMID:29515545

Müller O, Wilson B, Paulsen ML, Rumińska A, Armo HR, Bratbak G, Øvreås L. 2018. Spatiotemporal Dynamics of Ammonia-Oxidizing Thaumarchaeota in Distinct Arctic Water Masses. Front Microbiol 9: 24.
doi: 10.3389/fmicb.2018.00024 PMID:29410658

Mable BK, Brysting AK, Jørgensen MH, Carbonell AK, Kiefer C, Ruiz-Duarte P, Lagesen K, Koch MA. 2018. Adding Complexity to Complexity: Gene Family Evolution in Polyploids. Front Ecol Evol 6.
doi: 10.3389/fevo.2018.00114

Engesmo A, Strand D, Gran-Stadniczeñko S, Edvardsen B, Medlin LK, Eikrem W. 2018. Development of a qPCR assay to detect and quantify ichthyotoxic flagellates along the Norwegian coast, and the first Norwegian record of Fibrocapsa japonica (Raphidophyceae). Harmful Algae 75: 105-117.
doi: 10.1016/j.hal.2018.04.007 PMID:29778220

Sæther T, Paulsen SM, Tungen JE, Vik A, Aursnes M, Holen T, Hansen TV, Nebb HI. 2018. Synthesis and biological evaluations of marine oxohexadecenoic acids: PPARα/γ dual agonism and anti-diabetic target gene effects. Eur J Med Chem 155: 736-753.
doi: 10.1016/j.ejmech.2018.06.034 PMID:29940464

Risnes LF, Christophersen A, Dahal-Koirala S, Neumann RS, Sandve GK, Sarna VK, Lundin KE, Qiao SW, Sollid LM. 2018. Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. J Clin Invest 128: 2642-2650.
doi: 10.1172/JCI98819 PMID:29757191

Lee S, Olsen T, Vinknes KJ, Refsum H, Gulseth HL, Birkeland KI, Drevon CA. 2018. Plasma Sulphur-Containing Amino Acids, Physical Exercise and Insulin Sensitivity in Overweight Dysglycemic and Normal Weight Normoglycemic Men. Nutrients 11.
doi: 10.3390/nu11010010 PMID:30577516

Lund Paulsen M, Müller O, Larsen A, Møller EF, Middelboe M, Sejr MK, Stedmon C. 2019. Biological transformation of Arctic dissolved organic matter in a NE Greenland fjord. Limnol Oceanogr 64: 1014-33.
doi: 10.1002/lno.11091

Moore TM, Zhou Z, Cohn W, Norheim F, Lin AJ, Kalajian N, Strumwasser AR, Cory K, Whitney K, Ho T, Ho T, Lee JL, Rucker DH, Shirihai O, van der Bliek AM, Whitelegge JP, Seldin MM, Lusis AJ, Lee S, Drevon CA, Mahata SK, Turcotte LP, Hevener AL. 2019. The impact of exercise on mitochondrial dynamics and the role of Drp1 in exercise performance and training adaptations in skeletal muscle. Mol Metab 21: 51-67.
doi: 10.1016/j.molmet.2018.11.012 PMID:30591411

Fuente SG, Camacho E, Peiró-Pastor R, Rastrojo A, Carrasco-Ramiro F, Aguado B, Requena/ JM. 2018. Complete and de novo assembly of the Leishmania braziliensis (M2904) genome. Mem Inst Oswaldo Cruz 114: e180438.
doi: 10.1590/0074-02760180438 PMID:30540030

Rouard M, Droc G, Martin G, Sardos J, Hueber Y, Guignon V, Cenci A, Geigle B, Hibbins MS, Yahiaoui N, Baurens FC, Berry V, Hahn MW, D'Hont A, Roux N. 2018. Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana). Genome Biol Evol 10: 3129-3140.
doi: 10.1093/gbe/evy227 PMID:30321324

Dahal-Koirala S, Ciacchi L, Petersen J, Risnes LF, Neumann RS, Christophersen A, Lundin KEA, Reid HH, Qiao SW, Rossjohn J, Sollid LM. 2019. Discriminative T-cell receptor recognition of highly homologous HLA-DQ2-bound gluten epitopes. J Biol Chem 294: 941-952.
doi: 10.1074/jbc.RA118.005736 PMID:30455354

Namouchi A, Guellil M, Kersten O, Hänsch S, Ottoni C, Schmid BV, Pacciani E, Quaglia L, Vermunt M, Bauer EL, Derrick M, Jensen AØ, Kacki S, Cohn SK Jr, Stenseth NC, Bramanti B. 2018. Integrative approach using Yersinia pestis genomes to revisit the historical landscape of plague during the Medieval Period. Proc Natl Acad Sci U S A 115: E11790-E11797.
doi: 10.1073/pnas.1812865115 PMID:30478041

Sivertsen A, Janice J, Pedersen T, Wagner TM, Hegstad J, Hegstad K. 2018. The Enterococcus Cassette Chromosome, a Genomic Variation Enabler in Enterococci. mSphere 3.
doi: 10.1128/mSphere.00402-18 PMID:30404935

Gran-Stadniczeñko S, Egge E, Hostyeva V, Logares R, Eikrem W, Edvardsen B. 2019. Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy. J Eukaryot Microbiol 66: 494-513.
doi: 10.1111/jeu.12700 PMID:30414334

Stüken A, Haverkamp THA, Dirven HAAM, Gilfillan GD, Leithaug M, Lund V. 2018. Microbial Community Composition of Tap Water and Biofilms Treated with or without Copper-Silver Ionization. Environ Sci Technol 52: 3354-3364.
doi: 10.1021/acs.est.7b05963 PMID:29461810

Nordgård ASR, Bergland WH, Bakke R, Østgaard K, Bakke I. 2018. Mapping anaerobic sludge bed community adaptations to manure supernatant in biogas reactors. Sci Rep 8: 15870.
doi: 10.1038/s41598-018-34088-1 PMID:30367088

Brynildsrud OB, Pepperell CS, Suffys P, Grandjean L, Monteserin J, Debech N, Bohlin J, Alfsnes K, Pettersson JO, Kirkeleite I, Fandinho F, da Silva MA, Perdigao J, Portugal I, Viveiros M, Clark T, Caws M, Dunstan S, Thai PVK, Lopez B, Ritacco V, Kitchen A, Brown TS, van Soolingen D, O'Neill MB, Holt KE, Feil EJ, Mathema B, Balloux F, Eldholm V. 2018. Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation. Sci Adv 4: eaat5869.
doi: 10.1126/sciadv.aat5869 PMID:30345355

Hoff SNK, Baalsrud HT, Tooming-Klunderud A, Skage M, Richmond T, Obernosterer G, Shirzadi R, Tørresen OK, Jakobsen KS, Jentoft S. 2019. Long-read sequence capture of the haemoglobin gene clusters across codfish species. Mol Ecol Resour 19: 245-259.
doi: 10.1111/1755-0998.12955 PMID:30329222

Lekang K, Hadziavdic K, Sandnes Skaar K, Jonassen I, Thompson EM, Troedsson C. 2018. Development and testing of an 18S rRNA phylogenetic microarray for marine sediments. J Microbiol Methods 154: 95-106.
doi: 10.1016/j.mimet.2018.10.007 PMID:30336165

Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K. 2018. Unicellular Origin of the Animal MicroRNA Machinery. Curr Biol 28: 3288-3295.e5.
doi: 10.1016/j.cub.2018.08.018 PMID:30318349

Strømme P, Groeneweg S, Lima de Souza EC, Zevenbergen C, Torgersbråten A, Holmgren A, Gurcan E, Meima ME, Peeters RP, Visser WE, Høneren Johansson L, Babovic A, Zetterberg H, Heuer H, Frengen E, Misceo D, Visser TJ. 2018. Mutated Thyroid Hormone Transporter OATP1C1 Associates with Severe Brain Hypometabolism and Juvenile Neurodegeneration. Thyroid 28: 1406-1415.
doi: 10.1089/thy.2018.0595 PMID:30296914

Hughes T, Sønderby IE, Polushina T, Hansson L, Holmgren A, Athanasiu L, Melbø-Jørgensen C, Hassani S, Hoeffding LK, Herms S, Bergen SE, Karlsson R, Song J, Rietschel M, Nöthen MM, Forstner AJ, Hoffmann P, Hultman CM, Landén M, Cichon S, Werge T, Andreassen OA, Le Hellard S, Djurovic S. 2018. Elevated expression of a minor isoform of ANK3 is a risk factor for bipolar disorder. Transl Psychiatry 8: 210.
doi: 10.1038/s41398-018-0175-x PMID:30297702

Callejas-Hernández F, Rastrojo A, Poveda C, Gironès N, Fresno M. 2018. Genomic assemblies of newly sequenced Trypanosoma cruzi strains reveal new genomic expansion and greater complexity. Sci Rep 8: 14631.
doi: 10.1038/s41598-018-32877-2 PMID:30279473

Senthakumaran T, Brandal LT, Lindstedt BA, Jørgensen SB, Charnock C, Tunsjø HS. 2018. Implications of stx loss for clinical diagnostics of Shiga toxin-producing Escherichia coli. Eur J Clin Microbiol Infect Dis 37: 2361-2370.
doi: 10.1007/s10096-018-3384-6 PMID:30267169

Guellil M, Kersten O, Namouchi A, Bauer EL, Derrick M, Jensen AØ, Stenseth NC, Bramanti B. 2018. Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia. Proc Natl Acad Sci U S A 115: 10422-10427.
doi: 10.1073/pnas.1807266115 PMID:30249639

Gofton AW, Margos G, Fingerle V, Hepner S, Loh SM, Ryan U, Irwin P, Oskam CL. 2018. Genome-wide analysis of Borrelia turcica and 'Candidatus Borrelia tachyglossi' shows relapsing fever-like genomes with unique genomic links to Lyme disease Borrelia. Infect Genet Evol 66: 72-81.
doi: 10.1016/j.meegid.2018.09.013 PMID:30240834

López-Muñoz AD, Rastrojo A, Alcamí A. 2018. Complete Genome Sequence of Herpes Simplex Virus 2 Strain 333. Microbiol Resour Announc 7.
doi: 10.1128/MRA.00870-18 PMID:30533931

Haverkamp THA, Geslin C, Lossouarn J, Podosokorskaya OA, Kublanov I, Nesbø CL. 2018. Thermosipho spp. Immune System Differences Affect Variation in Genome Size and Geographical Distributions. Genome Biol Evol 10: 2853-2866.
doi: 10.1093/gbe/evy202 PMID:30239713

Orr RJS, Zhao S, Klaveness D, Yabuki A, Ikeda K, Watanabe MM, Shalchian-Tabrizi K. 2018. Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evol Biol 18: 115.
doi: 10.1186/s12862-018-1224-z PMID:30021531

Ayabina D, Ronning JO, Alfsnes K, Debech N, Brynildsrud OB, Arnesen T, Norheim G, Mengshoel AT, Rykkvin R, Dahle UR, Colijn C, Eldholm V. 2018. Genome-based transmission modelling separates imported tuberculosis from recent transmission within an immigrant population. Microb Genom 4.
doi: 10.1099/mgen.0.000219 PMID:30216147

Orr RJ, Waeschenbach A, Enevoldsen EL, Boeve JP, Haugen MN, Voje KL, Porter J, Zágoršek K, Smith AM, Gordon DP, Liow LH. 2018. Bryozoan genera Fenestrulina and Microporella no longer confamilial; multi-gene phylogeny supports separation. 186: 190-9.
doi: 10.1093/zoolinnean/zly055

Christensen KA, Rondeau EB, Minkley DR, Leong JS, Nugent CM, Danzmann RG, Ferguson MM, Stadnik A, Devlin RH, Muzzerall R, Edwards M, Davidson WS, Koop BF. 2018. The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly. PLoS One 13: e0204076.
doi: 10.1371/journal.pone.0204076 PMID:30212580

Taiaroa G, Samuelsen Ø, Kristensen T, Økstad OAL, Heikal A. 2018. Complete Genome Sequence of Pseudomonas aeruginosa K34-7, a Carbapenem-Resistant Isolate of the High-Risk Sequence Type 233. Microbiol Resour Announc 7.
doi: 10.1128/MRA.00886-18 PMID:30533874

Tsagaraki TM, Pree B, Leiknes Ø, Larsen A, Bratbak G, Øvreås L, Egge JK, Spanek R, Paulsen ML, Olsen Y, Vadstein O, Thingstad TF. 2018. Bacterial community composition responds to changes in copepod abundance and alters ecosystem function in an Arctic mesocosm study. ISME J 12: 2694-2705.
doi: 10.1038/s41396-018-0217-7 PMID:29991763

Eide M, Rydbeck H, Tørresen OK, Lille-Langøy R, Puntervoll P, Goldstone JV, Jakobsen KS, Stegeman J, Goksøyr A, Karlsen OA. 2018. Independent losses of a xenobiotic receptor across teleost evolution. Sci Rep 8: 10404.
doi: 10.1038/s41598-018-28498-4 PMID:29991818

Rodríguez-Castañeda F, Lemma RB, Cuervo I, Bengtsen M, Moen LM, Ledsaak M, Eskeland R, Gabrielsen OS. 2018. The SUMO protease SENP1 and the chromatin remodeler CHD3 interact and jointly affect chromatin accessibility and gene expression. J Biol Chem 293: 15439-15454.
doi: 10.1074/jbc.RA118.002844 PMID:30082317

Mayerhofer CCK, Awoyemi AO, Moscavitch SD, Lappegård KT, Hov JR, Aukrust P, Hovland A, Lorenzo A, Halvorsen S, Seljeflot I, Gullestad L, Trøseid M, Broch K. 2018. Design of the GutHeart-targeting gut microbiota to treat heart failure-trial: a Phase II, randomized clinical trial. ESC Heart Fail 5: 977-984.
doi: 10.1002/ehf2.12332 PMID:30088346

Adam AC, Skjærven KH, Whatmore P, Moren M, Lie KK. 2018. Parental high dietary arachidonic acid levels modulated the hepatic transcriptome of adult zebrafish (Danio rerio) progeny. PLoS One 13: e0201278.
doi: 10.1371/journal.pone.0201278 PMID:30070994

Jin Y, Olsen RE, Gillard GB, Østensen MA, Korsvoll SA, Santi N, Vik JO, Sandve SR, Olsen Y. 2018. A systemic study of lipid metabolism regulation in salmon fingerlings and early juveniles fed plant oil. Br J Nutr 120: 653-664.
doi: 10.1017/S0007114518001885 PMID:30064538

Bahram M, Anslan S, Hildebrand F, Bork P, Tedersoo L. 2019. Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment. Environ Microbiol Rep 11: 487-494.
doi: 10.1111/1758-2229.12684 PMID:30058291

Müller O, Bang-Andreasen T, White RA 3rd, Elberling B, Taş N, Kneafsey T, Jansson JK, Øvreås L. 2018. Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates. Environ Microbiol 20: 4328-4342.
doi: 10.1111/1462-2920.14348 PMID:29971895

Jørgensen TE, Karlsen BO, Emblem Å, Breines R, Andreassen M, Rounge TB, Nederbragt AJ, Jakobsen KS, Nymark M, Ursvik A, Coucheron DH, Jakt LM, Nordeide JT, Moum T, Johansen SD. 2018. Mitochondrial genome variation of Atlantic cod. BMC Res Notes 11: 397.
doi: 10.1186/s13104-018-3506-3 PMID:29921324

Salvadori G, Junges R, Åmdal HA, Chen T, Morrison DA, Petersen FC. 2018. High-resolution profiles of the Streptococcus mitis CSP signaling pathway reveal core and strain-specific regulated genes. BMC Genomics 19: 453.
doi: 10.1186/s12864-018-4802-y PMID:29898666

de Muinck EJ, Trosvik P. 2018. Individuality and convergence of the infant gut microbiota during the first year of life. Nat Commun 9: 2233.
doi: 10.1038/s41467-018-04641-7 PMID:29884786

Nyerges Á, Csörgő B, Draskovits G, Kintses B, Szili P, Ferenc G, Révész T, Ari E, Nagy I, Bálint B, Vásárhelyi BM, Bihari P, Számel M, Balogh D, Papp H, Kalapis D, Papp B, Pál C. 2018. Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance. Proc Natl Acad Sci U S A 115: E5726-E5735.
doi: 10.1073/pnas.1801646115 PMID:29871954

Bakke MJ, Agusti C, Bruusgaard JC, Sundaram AYM, Horsberg TE. 2018. Deltamethrin resistance in the salmon louse, Lepeophtheirus salmonis (Krøyer): Maternal inheritance and reduced apoptosis. Sci Rep 8: 8450.
doi: 10.1038/s41598-018-26420-6 PMID:29855496

Ajayi C, Åberg E, Askarian F, Sollid JUE, Johannessen M, Hanssen AM. 2018. Genetic variability in the sdrD gene in Staphylococcus aureus from healthy nasal carriers. BMC Microbiol 18: 34.
doi: 10.1186/s12866-018-1179-7 PMID:29661152

Wang Y, Lysøe E, Armarego-Marriott T, Erban A, Paruch L, van Eerde A, Bock R, Liu-Clarke J. 2018. Transcriptome and metabolome analyses provide insights into root and root-released organic anion responses to phosphorus deficiency in oat. J Exp Bot 69: 3759-3771.
doi: 10.1093/jxb/ery176 PMID:29757407

Lee S, Norheim F, Gulseth HL, Langleite TM, Aker A, Gundersen TE, Holen T, Birkeland KI, Drevon CA. 2018. Skeletal muscle phosphatidylcholine and phosphatidylethanolamine respond to exercise and influence insulin sensitivity in men. Sci Rep 8: 6531.
doi: 10.1038/s41598-018-24976-x PMID:29695812

Holm KO, Bækkedal C, Söderberg JJ, Haugen P. 2018. Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing. Genome Biol Evol 10: 1127-1131.
doi: 10.1093/gbe/evy074 PMID:29635365

Lewandowska-Sabat AM, Hansen SF, Solberg TR, Østerås O, Heringstad B, Boysen P, Olsaker I. 2018. MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae. BMC Genomics 19: 241.
doi: 10.1186/s12864-018-4591-3 PMID:29636015

Tørresen OK, Brieuc MSO, Solbakken MH, Sørhus E, Nederbragt AJ, Jakobsen KS, Meier S, Edvardsen RB, Jentoft S. 2018. Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats. BMC Genomics 19: 240.
doi: 10.1186/s12864-018-4616-y PMID:29636006

Bagi A, Riiser ES, Molland HS, Star B, Haverkamp THA, Sydnes MO, Pampanin DM. 2018. Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil. BMC Microbiol 18: 25.
doi: 10.1186/s12866-018-1171-2 PMID:29609542

Segorbe D, Wilkinson D, Mizeranschi A, Hughes T, Aaløkken R, Váchová L, Palková Z, Gilfillan GD. 2018. An optimized FAIRE procedure for low cell numbers in yeast. Yeast 35: 507-512.
doi: 10.1002/yea.3316 PMID:29577419

Eggestøl HØ, Lunde HS, Rønneseth A, Fredman D, Petersen K, Mishra CK, Furmanek T, Colquhoun DJ, Wergeland HI, Haugland GT. 2018. Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure. Sci Rep 8: 5261.
doi: 10.1038/s41598-018-23667-x PMID:29588496

Pedersen T, Sekyere JO, Govinden U, Moodley K, Sivertsen A, Samuelsen Ø, Essack SY, Sundsfjord A. 2018. Spread of Plasmid-Encoded NDM-1 and GES-5 Carbapenemases among Extensively Drug-Resistant and Pandrug-Resistant Clinical Enterobacteriaceae in Durban, South Africa. Antimicrob Agents Chemother 62.
doi: 10.1128/AAC.02178-17 PMID:29507063

Lie KK, Tørresen OK, Solbakken MH, Rønnestad I, Tooming-Klunderud A, Nederbragt AJ, Jentoft S, Sæle Ø. 2018. Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics 19: 186.
doi: 10.1186/s12864-018-4570-8 PMID:29510660

Kotlarz D, Marquardt B, Barøy T, Lee WS, Konnikova L, Hollizeck S, Magg T, Lehle AS, Walz C, Borggraefe I, Hauck F, Bufler P, Conca R, Wall SM, Schumacher EM, Misceo D, Frengen E, Bentsen BS, Uhlig HH, Hopfner KP, Muise AM, Snapper SB, Strømme P, Klein C. 2018. Human TGF-β1 deficiency causes severe inflammatory bowel disease and encephalopathy. Nat Genet 50: 344-348.
doi: 10.1038/s41588-018-0063-6 PMID:29483653

Lingaas F, Guttersrud OA, Arnet E, Espenes A. 2018. Neuronal ceroid lipofuscinosis in Salukis is caused by a single base pair insertion in CLN8. Anim Genet 49: 52-58.
doi: 10.1111/age.12629 PMID:29446145

Fagerlund A, Langsrud S, Moen B, Heir E, Møretrø T. 2018. Complete Genome Sequences of Six Listeria monocytogenes Sequence Type 9 Isolates from Meat Processing Plants in Norway. Genome Announc 6.
doi: 10.1128/genomeA.00016-18 PMID:29449378

Knutsen TM, Olsen HG, Tafintseva V, Svendsen M, Kohler A, Kent MP, Lien S. 2018. Unravelling genetic variation underlying de novo-synthesis of bovine milk fatty acids. Sci Rep 8: 2179.
doi: 10.1038/s41598-018-20476-0 PMID:29391528

Manousaki T, Tsakogiannis A, Lagnel J, Kyriakis D, Duncan N, Estevez A, Tsigenopoulos CS. 2018. Muscle and liver transcriptome characterization and genetic marker discovery in the farmed meagre, Argyrosomus regius. Mar Genomics 39: 39-44.
doi: 10.1016/j.margen.2018.01.002 PMID:29395623

Eichner C, Dondrup M, Nilsen F. 2018. RNA sequencing reveals distinct gene expression patterns during the development of parasitic larval stages of the salmon louse (Lepeophtheirus salmonis). J Fish Dis 41: 1005-1029.
doi: 10.1111/jfd.12770 PMID:29368347

Olsen-Bergem H, Kristoffersen AK, Bjørnland T, Aas JA. 2018. Is it possible to contaminate the temporomandibular joint by arthrocentesis?. Oral Surg 11: 183-8.
doi: 10.1111/ors.12331

Vader A, Laughinghouse HD 4th, Griffiths C, Jakobsen KS, Gabrielsen TM. 2018. Proton-pumping rhodopsins are abundantly expressed by microbial eukaryotes in a high-Arctic fjord. Environ Microbiol 20: 890-902.
doi: 10.1111/1462-2920.14035 PMID:29266690

Trosvik P, Rueness EK, de Muinck EJ, Moges A, Mekonnen A. 2018. Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys. Sci Rep 8: 20.
doi: 10.1038/s41598-017-18435-2 PMID:29311667

Rekdal SL, Anmarkrud JA, Johnsen A, Lifjeld JT. 2018. Genotyping strategy matters when analyzing hypervariable major histocompatibility complex-Experience from a passerine bird. Ecol Evol 8: 1680-1692.
doi: 10.1002/ece3.3757 PMID:29435243

Fehlmann T, Backes C, Alles J, Fischer U, Hart M, Kern F, Langseth H, Rounge T, Umu SU, Kahraman M, Laufer T, Haas J, Staehler C, Ludwig N, Hübenthal M, Meder B, Franke A, Lenhof HP, Meese E, Keller A. 2018. A high-resolution map of the human small non-coding transcriptome. Bioinformatics 34: 1621-1628.
doi: 10.1093/bioinformatics/btx814 PMID:29281000

Baalsrud HT, Tørresen OK, Solbakken MH, Salzburger W, Hanel R, Jakobsen KS, Jentoft S. 2018. De Novo Gene Evolution of Antifreeze Glycoproteins in Codfishes Revealed by Whole Genome Sequence Data. Mol Biol Evol 35: 593-606.
doi: 10.1093/molbev/msx311 PMID:29216381

Ketto IA, Øyaas J, Ådnøy T, Johansen AG, Schüller RB, Narvhus J, Skeie SB. 2018. The influence of milk protein genetic polymorphism on the physical properties of cultured milk. International Dairy Journal 78: 130-7.
doi: 10.1016/j.idairyj.2017.11.009

Published June 21, 2022 10:12 AM - Last modified June 21, 2022 10:12 AM