Publications 2015

 

Hagen LH, Vivekanand V, Pope PB, Eijsink VG, Horn SJ. 2015. The effect of storage conditions on microbial community composition and biomethane potential in a biogas starter culture. Appl Microbiol Biotechnol 99: 5749-61.
doi: 10.1007/s00253-015-6623-0 PMID:25947246

Botnen S, Kauserud H, Carlsen T, Blaalid R, Høiland K. 2015. Mycorrhizal fungal communities in coastal sand dunes and heaths investigated by pyrosequencing analyses. Mycorrhiza 25: 447-56.
doi: 10.1007/s00572-014-0624-1 PMID:25597300

Baldo L, Riera JL, Tooming-Klunderud A, Albà MM, Salzburger W. 2015. Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes. PLoS One 10: e0127462.
doi: 10.1371/journal.pone.0127462 PMID:25978452

Dahle H, Økland I, Thorseth IH, Pederesen RB, Steen IH. 2015. Energy landscapes shape microbial communities in hydrothermal systems on the Arctic Mid-Ocean Ridge. ISME J 9: 1593-606.
doi: 10.1038/ismej.2014.247 PMID:25575309

Casén C, Vebø HC, Sekelja M, Hegge FT, Karlsson MK, Ciemniejewska E, Dzankovic S, Frøyland C, Nestestog R, Engstrand L, Munkholm P, Nielsen OH, Rogler G, Simrén M, Öhman L, Vatn MH, Rudi K. 2015. Deviations in human gut microbiota: a novel diagnostic test for determining dysbiosis in patients with IBS or IBD. Aliment Pharmacol Ther 42: 71-83.
doi: 10.1111/apt.13236 PMID:25973666

Fjaer R, Brodtkorb E, Øye AM, Sheng Y, Vigeland MD, Kvistad KA, Backe PH, Selmer KK. 2015. Generalized epilepsy in a family with basal ganglia calcifications and mutations in SLC20A2 and CHRNB2. Eur J Med Genet 58: 624-8.
doi: 10.1016/j.ejmg.2015.10.005 PMID:26475232

Roalkvam I, Drønen K, Stokke R, Daae FL, Dahle H, Steen IH. 2015. Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria. Front Microbiol 6: 987.
doi: 10.3389/fmicb.2015.00987 PMID:26441916

Umu ÖC, Frank JA, Fangel JU, Oostindjer M, da Silva CS, Bolhuis EJ, Bosch G, Willats WG, Pope PB, Diep DB. 2015. Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations. Microbiome 3: 16.
doi: 10.1186/s40168-015-0078-5 PMID:25905018

Panagopoulos I, Gorunova L, Bjerkehagen B, Lobmaier I, Heim S. 2015. LAMTOR1-PRKCD and NUMA1-SFMBT1 fusion genes identified by RNA sequencing in aneurysmal benign fibrous histiocytoma with t(3;11)(p21;q13). Cancer Genet 208: 545-51.
doi: 10.1016/j.cancergen.2015.07.007 PMID:26432191

Porcellato D, Frantzen C, Rangberg A, Umu OC, Gabrielsen C, Nes IF, Amdam GV, Diep DB. 2015. Draft Genome Sequence of Lactobacillus kunkeei AR114 Isolated from Honey Bee Gut. Genome Announc 3.
doi: 10.1128/genomeA.00144-15 PMID:25792062

Dotterud CK, Avershina E, Sekelja M, Simpson MR, Rudi K, Storrø O, Johnsen R, Øien T. 2015. Does Maternal Perinatal Probiotic Supplementation Alter the Intestinal Microbiota of Mother and Child?. J Pediatr Gastroenterol Nutr 61: 200-7.
doi: 10.1097/MPG.0000000000000781 PMID:25782657

Nowak P, Troseid M, Avershina E, Barqasho B, Neogi U, Holm K, Hov JR, Noyan K, Vesterbacka J, Svärd J, Rudi K, Sönnerborg A. 2015. Gut microbiota diversity predicts immune status in HIV-1 infection. AIDS 29: 2409-18.
doi: 10.1097/QAD.0000000000000869 PMID:26355675

Logue JB, Stedmon CA, Kellerman AM, Nielsen NJ, Andersson AF, Laudon H, Lindström ES, Kritzberg ES. 2016. Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter. ISME J 10: 533-45.
doi: 10.1038/ismej.2015.131 PMID:26296065

Olsen S, Striberny B, Hollmann J, Schwacke R, Popper Z, Krause K. 2016. Getting ready for host invasion: elevated expression and action of xyloglucan endotransglucosylases/hydrolases in developing haustoria of the holoparasitic angiosperm Cuscuta. J Exp Bot 67: 695-708.
doi: 10.1093/jxb/erv482 PMID:26561437

Santos SN, Gacesa R, Taketani RG, Long PF, Melo IS. 2015. Genome Sequence of Streptomyces caatingaensis CMAA 1322, a New Abiotic Stress-Tolerant Actinomycete Isolated from Dried Lake Bed Sediment in the Brazilian Caatinga Biome. Genome Announc 3.
doi: 10.1128/genomeA.01020-15 PMID:26358601

Santos SN, Kavamura VN, Taketani RG, Vasconcellos RL, Zucchi TD, Melo IS. 2015. Draft Genome Sequence of Bacillus sp. Strain CMAA 1185, a Cellullolytic Bacterium Isolated from Stain House Lake, Antarctic Peninsula. Genome Announc 3.
doi: 10.1128/genomeA.00436-15 PMID:26021916

Rueness EK, Trosvik P, Atickem A, Sillero-Zubiri C, Trucchi E. 2015. The African wolf is a missing link in the wolf-like canid phylogeny. .
doi: 10.1101/017996

Read TD, Petit III RA, Joseph SJ, Alam MT, RW, Ahmad M, Bhimani R, Vuong JS, Haase CP, Webb H, Dove ADM. 2015. Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus Smith 1828. PeerJ PrePrints.
doi: 10.7287/peerj.preprints.837v1

Bråte J, Adamski M, Neumann RS, Shalchian-Tabrizi K, Adamska M. 2015. Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proc Biol Sci 282.
doi: 10.1098/rspb.2015.1746 PMID:26702038

Hjerde E, Karlsen C, Sørum H, Parkhill J, Willassen NP, Thomson NR. 2015. Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. BMC Genomics 16: 447.
doi: 10.1186/s12864-015-1669-z PMID:26059548

Ayllon F, Kjærner-Semb E, Furmanek T, Wennevik V, Solberg MF, Dahle G, Taranger GL, Glover KA, Almén MS, Rubin CJ, Edvardsen RB, Wargelius A. 2015. The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males. PLoS Genet 11: e1005628.
doi: 10.1371/journal.pgen.1005628 PMID:26551894

Penglase S, Edvardsen RB, Furmanek T, Rønnestad I, Karlsen Ø, van der Meeren T, Hamre K. 2015. Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae. Redox Biol 5: 308-18.
doi: 10.1016/j.redox.2015.06.003 PMID:26099546

Dees MW, Lysøe E, Alsheikh M, Davik J, Brurberg MB. 2016. Resistance to Streptomyces turgidiscabies in potato involves an early and sustained transcriptional reprogramming at initial stages of tuber formation. Mol Plant Pathol 17: 703-13.
doi: 10.1111/mpp.12323 PMID:26416294

Olsen PA, Lund K, Krauss S. 2015. Expression profiling of wild type and β-catenin gene disrupted human BxPC-3 pancreatic adenocarcinoma cells. Genom Data 4: 150-2.
doi: 10.1016/j.gdata.2015.04.010 PMID:26484203

Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M. 2015. Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae). PLoS One 10: e0140175.
doi: 10.1371/journal.pone.0140175 PMID:26448557

Berg PR, Jentoft S, Star B, Ring KH, Knutsen H, Lien S, Jakobsen KS, André C. 2015. Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.). Genome Biol Evol 7: 1644-63.
doi: 10.1093/gbe/evv093 PMID:25994933

Holm KO, Nilsson K, Hjerde E, Willassen NP, Milton DL. 2015. Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia. Stand Genomic Sci 10: 60.
doi: 10.1186/s40793-015-0060-7 PMID:26380645

Munkley J, Oltean S, Vodák D, Wilson BT, Livermore KE, Zhou Y, Star E, Floros VI, Johannessen B, Knight B, McCullagh P, McGrath J, Crundwell M, Skotheim RI, Robson CN, Leung HY, Harries LW, Rajan P, Mills IG, Elliott DJ. 2015. The androgen receptor controls expression of the cancer-associated sTn antigen and cell adhesion through induction of ST6GalNAc1 in prostate cancer. Oncotarget 6: 34358-74.
doi: 10.18632/oncotarget.6024 PMID:26452038

Rounge TB, Lauritzen M, Langseth H, Enerly E, Lyle R, Gislefoss RE. 2015. microRNA Biomarker Discovery and High-Throughput DNA Sequencing Are Possible Using Long-term Archived Serum Samples. Cancer Epidemiol Biomarkers Prev 24: 1381-7.
doi: 10.1158/1055-9965.EPI-15-0289 PMID:26108462

García-Moyano A, Austnes AE, Lanzén A, González-Toril E, Aguilera Á, Øvreås L. 2015. Novel and Unexpected Microbial Diversity in Acid Mine Drainage in Svalbard (78° N), Revealed by Culture-Independent Approaches. Microorganisms 3: 667-94.
doi: 10.3390/microorganisms3040667 PMID:27682111

Panagopoulos I, Gorunova L, Bjerkehagen B, Heim S. 2015. Novel KAT6B-KANSL1 fusion gene identified by RNA sequencing in retroperitoneal leiomyoma with t(10;17)(q22;q21). PLoS One 10: e0117010.
doi: 10.1371/journal.pone.0117010 PMID:25621995

Ravi A, Avershina E, Foley SL, Ludvigsen J, Storrø O, Øien T, Johnsen R, McCartney AL, L'Abée-Lund TM, Rudi K. 2015. The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons. Sci Rep 5: 15317.
doi: 10.1038/srep15317 PMID:26507767

Panagopoulos I, Gorunova L, Bjerkehagen B, Lobmaier I, Heim S. 2016. Fusion of the TBL1XR1 and HMGA1 genes in splenic hemangioma with t(3;6)(q26;p21). Int J Oncol 48: 1242-50.
doi: 10.3892/ijo.2015.3310 PMID:26708416

Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M. 2015. RAD-seq data point to a northern origin of the arctic-alpine genus Cassiope (Ericaceae). Mol Phylogenet Evol 95: 152-160.
doi: 10.1016/j.ympev.2015.11.009 PMID:26691641

Gratton P, Trucchi E, Trasatti A, Riccarducci G, Marta S, Allegrucci G, Cesaroni D, Sbordoni V. 2016. Testing Classical Species Properties with Contemporary Data: How "Bad Species" in the Brassy Ringlets (Erebia tyndarus complex, Lepidoptera) Turned Good. Syst Biol 65: 292-303.
doi: 10.1093/sysbio/syv087 PMID:26568458

Moen B, Røssvoll E, Måge I, Møretrø T, Langsrud S. 2016. Microbiota formed on attached stainless steel coupons correlates with the natural biofilm of the sink surface in domestic kitchens. Can J Microbiol 62: 148-60.
doi: 10.1139/cjm-2015-0562 PMID:26758935

Olsen-Bergem H, Kristoffersen AK, Bjørnland T, Reseland JE, Aas JA. 2016. Juvenile idiopathic arthritis and rheumatoid arthritis: bacterial diversity in temporomandibular joint synovial fluid in comparison with immunological and clinical findings. Int J Oral Maxillofac Surg 45: 318-22.
doi: 10.1016/j.ijom.2015.08.986 PMID:26554824

Barson NJ, Aykanat T, Hindar K, Baranski M, Bolstad GH, Fiske P, Jacq C, Jensen AJ, Johnston SE, Karlsson S, Kent M, Moen T, Niemelä E, Nome T, Næsje TF, Orell P, Romakkaniemi A, Sægrov H, Urdal K, Erkinaro J, Lien S, Primmer CR. 2015. Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon. Nature 528: 405-8.
doi: 10.1038/nature16062 PMID:26536110

Pedurupillay CR, Barøy T, Holmgren A, Blomhoff A, Vigeland MD, Sheng Y, Frengen E, Strømme P, Misceo D. 2015. Kaufman oculocerebrofacial syndrome in sisters with novel compound heterozygous mutation in UBE3B. Am J Med Genet A 167A: 657-63.
doi: 10.1002/ajmg.a.36944 PMID:25691420

Barøy T, Koster J, Strømme P, Ebberink MS, Misceo D, Ferdinandusse S, Holmgren A, Hughes T, Merckoll E, Westvik J, Woldseth B, Walter J, Wood N, Tvedt B, Stadskleiv K, Wanders RJ, Waterham HR, Frengen E. 2015. A novel type of rhizomelic chondrodysplasia punctata, RCDP5, is caused by loss of the PEX5 long isoform. Hum Mol Genet 24: 5845-54.
doi: 10.1093/hmg/ddv305 PMID:26220973

Simachew A, Lanzén A, Gessesse A, Øvreås L. 2016. Prokaryotic Community Diversity Along an Increasing Salt Gradient in a Soda Ash Concentration Pond. Microb Ecol 71: 326-38.
doi: 10.1007/s00248-015-0675-7 PMID:26408190

Pettersen VK, Steinsland H, Wiker HG. 2015. Improving genome annotation of enterotoxigenic Escherichia coli TW10598 by a label-free quantitative MS/MS approach. Proteomics 15: 3826-34.
doi: 10.1002/pmic.201500278 PMID:26349841

Stiksrud B, Nowak P, Nwosu FC, Kvale D, Thalme A, Sonnerborg A, Ueland PM, Holm K, Birkeland SE, Dahm AE, Sandset PM, Rudi K, Hov JR, Dyrhol-Riise AM, Trøseid M. 2015. Reduced Levels of D-dimer and Changes in Gut Microbiota Composition After Probiotic Intervention in HIV-Infected Individuals on Stable ART. J Acquir Immune Defic Syndr 70: 329-37.
doi: 10.1097/QAI.0000000000000784 PMID:26258571

Pourteymour S, Lee S, Langleite TM, Eckardt K, Hjorth M, Bindesbøll C, Dalen KT, Birkeland KI, Drevon CA, Holen T, Norheim F. 2015. Perilipin 4 in human skeletal muscle: localization and effect of physical activity. Physiol Rep 3.
doi: 10.14814/phy2.12481 PMID:26265748

Liaskou E, Henriksen EK, Holm K, Kaveh F, Hamm D, Fear J, Viken MK, Hov JR, Melum E, Robins H, Olweus J, Karlsen TH, Hirschfield GM. 2016. High-throughput T-cell receptor sequencing across chronic liver diseases reveals distinct disease-associated repertoires. Hepatology 63: 1608-19.
doi: 10.1002/hep.28116 PMID:26257205

Torkildsen S, Gorunova L, Beiske K, Tjønnfjord GE, Heim S, Panagopoulos I. 2015. Novel ZEB2-BCL11B Fusion Gene Identified by RNA-Sequencing in Acute Myeloid Leukemia with t(2;14)(q22;q32). PLoS One 10: e0132736.
doi: 10.1371/journal.pone.0132736 PMID:26186352

Sun L, Pope PB, Eijsink VG, Schnürer A. 2015. Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure. Microb Biotechnol 8: 815-27.
doi: 10.1111/1751-7915.12298 PMID:26152665

Lundén K, Danielsson M, Durling MB, Ihrmark K, Gorriz MN, Stenlid J, Asiegbu FO, Elfstrand M. 2015. Transcriptional Responses Associated with Virulence and Defence in the Interaction between Heterobasidion annosum s.s. and Norway Spruce. PLoS One 10: e0131182.
doi: 10.1371/journal.pone.0131182 PMID:26151363

Stokke R, Dahle H, Roalkvam I, Wissuwa J, Daae FL, Tooming-Klunderud A, Thorseth IH, Pedersen RB, Steen IH. 2015. Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environ Microbiol 17: 4063-77.
doi: 10.1111/1462-2920.12970 PMID:26147346

Flåtten I, Fossum-Raunehaug S, Taipale R, Martinsen S, Skarstad K. 2015. The DnaA Protein Is Not the Limiting Factor for Initiation of Replication in Escherichia coli. PLoS Genet 11: e1005276.
doi: 10.1371/journal.pgen.1005276 PMID:26047361

Gabrielsen C, Drabløs F, Afset JE. 2015. Genome Sequences of 11 Shiga Toxin-Producing Escherichia coli Strains. Genome Announc 3.
doi: 10.1128/genomeA.00418-15 PMID:25977421

Snir O, Mesin L, Gidoni M, Lundin KE, Yaari G, Sollid LM. 2015. Analysis of Celiac Disease Autoreactive Gut Plasma Cells and Their Corresponding Memory Compartment in Peripheral Blood Using High-Throughput Sequencing. J Immunol 194: 5703-12.
doi: 10.4049/jimmunol.1402611 PMID:25972486

Eldholm V, Monteserin J, Rieux A, Lopez B, Sobkowiak B, Ritacco V, Balloux F. 2015. Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain. Nat Commun 6: 7119.
doi: 10.1038/ncomms8119 PMID:25960343

Epp LS, Gussarova G, Boessenkool S, Olsen J, Haile J, Schrøder-Nielsen A, Ludikova A, Hassel K, Stenøien HK, Funder S, Willerslev E, Kjær K, Brochmann C. 2015. Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes. Quaternary Science Reviews 117: 152-63.
doi: 10.1016/j.quascirev.2015.03.027

Tveit AT, Urich T, Frenzel P, Svenning MM. 2015. Metabolic and trophic interactions modulate methane production by Arctic peat microbiota in response to warming. Proc Natl Acad Sci U S A 112: E2507-16.
doi: 10.1073/pnas.1420797112 PMID:25918393

Bakke I, Coward E, Andersen T, Vadstein O. 2015. Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua). Environ Microbiol 17: 3914-24.
doi: 10.1111/1462-2920.12888 PMID:25923170

Egge ES, Johannessen TV, Andersen T, Eikrem W, Bittner L, Larsen A, Sandaa RA, Edvardsen B. 2015. Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing. Mol Ecol 24: 3026-42.
doi: 10.1111/mec.13160 PMID:25893259

Pihlstrøm L, Rengmark A, Bjørnarå KA, Dizdar N, Fardell C, Forsgren L, Holmberg B, Larsen JP, Linder J, Nissbrandt H, Tysnes OB, Dietrichs E, Toft M. 2015. Fine mapping and resequencing of the PARK16 locus in Parkinson's disease. J Hum Genet 60: 357-62.
doi: 10.1038/jhg.2015.34 PMID:25855069

La Rosa SL, Snipen LG, Murray BE, Willems RJ, Gilmore MS, Diep DB, Nes IF, Brede DA. 2015. A Genomic Virulence Reference Map of Enterococcus faecalis Reveals an Important Contribution of Phage03-Like Elements in Nosocomial Genetic Lineages to Pathogenicity in a Caenorhabditis elegans Infection Model. Infect Immun 83: 2156-67.
doi: 10.1128/IAI.02801-14 PMID:25776747

Olsen TK, Panagopoulos I, Meling TR, Micci F, Gorunova L, Thorsen J, Due-Tønnessen B, Scheie D, Lund-Iversen M, Krossnes B, Saxhaug C, Heim S, Brandal P. 2015. Fusion genes with ALK as recurrent partner in ependymoma-like gliomas: a new brain tumor entity?. Neuro Oncol 17: 1365-73.
doi: 10.1093/neuonc/nov039 PMID:25795305

Albrecht E, Norheim F, Thiede B, Holen T, Ohashi T, Schering L, Lee S, Brenmoehl J, Thomas S, Drevon CA, Erickson HP, Maak S. 2015. Irisin - a myth rather than an exercise-inducible myokine. Sci Rep 5: 8889.
doi: 10.1038/srep08889 PMID:25749243

Davey M, Blaalid R, Vik U, Carlsen T, Kauserud H, Eidesen PB. 2015. Primary succession of Bistorta vivipara (L.) Delabre (Polygonaceae) root-associated fungi mirrors plant succession in two glacial chronosequences. Environ Microbiol 17: 2777-90.
doi: 10.1111/1462-2920.12770 PMID:25580779

Nguyen TT, Landfald B. 2015. Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor. Front Microbiol 6: 17.
doi: 10.3389/fmicb.2015.00017 PMID:25667586