Publications 2013


Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S, Nowka B, Richter A, Spieck E, Lebedeva E, Loy A, Wagner M, Daims H. 2014. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environ Microbiol 16: 3055-71.
doi: 10.1111/1462-2920.12300 PMID:24118804

Zhao S, Shalchian-Tabrizi K, Klaveness D. 2013. Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Mol Phylogenet Evol 69: 462-8.
doi: 10.1016/j.ympev.2013.08.005 PMID:23973893

Petri A, Pfeil BE, Oxelman B. 2013. Introgressive hybridization between anciently diverged lineages of Silene (Caryophyllaceae). PLoS One 8: e67729.
doi: 10.1371/journal.pone.0067729 PMID:23861793

Berry D, Stecher B, Schintlmeister A, Reichert J, Brugiroux S, Wild B, Wanek W, Richter A, Rauch I, Decker T, Loy A, Wagner M. 2013. Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing. Proc Natl Acad Sci U S A 110: 4720-5.
doi: 10.1073/pnas.1219247110 PMID:23487774

Avershina E, Storrø O, Øien T, Johnsen R, Pope P, Rudi K. 2014. Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children. FEMS Microbiol Ecol 87: 280-90.
doi: 10.1111/1574-6941.12223 PMID:24112053

Boessenkool S, McGlynn G, Epp LS, Taylor D, Pimentel M, Gizaw A, Nemomissa S, Brochmann C, Popp M. 2014. Use of ancient sedimentary DNA as a novel conservation tool for high-altitude tropical biodiversity. Conserv Biol 28: 446-55.
doi: 10.1111/cobi.12195 PMID:24372820

Hjerde E, Pierechod MM, Williamson AK, Bjerga GE, Willassen NP, Smalås AO, Altermark B. 2013. Draft Genome Sequence of the Actinomycete Rhodococcus sp. Strain AW25M09, Isolated from the Hadsel Fjord, Northern Norway. Genome Announc 1: e0005513.
doi: 10.1128/genomeA.00055-13 PMID:23516194

Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ. 2013. The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. J Exp Zool B Mol Dev Evol 320: 84-93.
doi: 10.1002/jez.b.22485 PMID:23349041

de Muinck EJ, Stenseth NC, Sachse D, Vander Roost J, Rønningen KS, Rudi K, Trosvik P. 2013. Context-dependent competition in a model gut bacterial community. PLoS One 8: e67210.
doi: 10.1371/journal.pone.0067210 PMID:23922635

Panagopoulos I, Gorunova L, Zeller B, Tierens A, Heim S. 2013. Cryptic FUS-ERG fusion identified by RNA-sequencing in childhood acute myeloid leukemia. Oncol Rep 30: 2587-92.
doi: 10.3892/or.2013.2751 PMID:24068373

de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, Rudi K, Stenseth NC, Trosvik P. 2013. Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche. BMC Genomics 14: 81.
doi: 10.1186/1471-2164-14-81 PMID:23384204

Lekva T, Berg JP, Lyle R, Heck A, Ringstad G, Olstad OK, Michelsen AE, Casar-Borota O, Bollerslev J, Ueland T. 2013. Epithelial splicing regulator protein 1 and alternative splicing in somatotroph adenomas. Endocrinology 154: 3331-43.
doi: 10.1210/en.2013-1051 PMID:23825128

Avershina E, Frisli T, Rudi K. 2013. De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data. Microbes Environ 28: 211-6.
doi: 10.1264/jsme2.me12157 PMID:23603801

Egge E, Bittner L, Andersen T, Audic S, de Vargas C, Edvardsen B. 2013. 454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes. PLoS One 8: e74371.
doi: 10.1371/journal.pone.0074371 PMID:24069303

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2013. Metagenomics in CO2 Monitoring. Energy Procedia 37: 4215-33.
doi: 10.1016/j.egypro.2013.06.324

Lanzén A, Simachew A, Gessesse A, Chmolowska D, Jonassen I, Øvreås L. 2013. Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes. PLoS One 8: e72577.
doi: 10.1371/journal.pone.0072577 PMID:24023625

Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ. 2013. Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection. PLoS One 8: e57543.
doi: 10.1371/journal.pone.0057543 PMID:23472090

Malmstrøm M, Jentoft S, Gregers TF, Jakobsen KS. 2013. Unraveling the evolution of the Atlantic cod's (Gadus morhua L.) alternative immune strategy. PLoS One 8: e74004.
doi: 10.1371/journal.pone.0074004 PMID:24019946

Markussen T, Sindre H, Jonassen CM, Tengs T, Kristoffersen AB, Ramsell J, Numanovic S, Hjortaas MJ, Christiansen DH, Dale OB, Falk K. 2013. Ultra-deep pyrosequencing of partial surface protein genes from infectious Salmon Anaemia virus (ISAV) suggest novel mechanisms involved in transition to virulence. PLoS One 8: e81571.
doi: 10.1371/journal.pone.0081571 PMID:24303056

McLeod A, Brede DA, Rud I, Axelsson L. 2013. Genome Sequence of Lactobacillus sakei subsp. sakei LS25, a Commercial Starter Culture Strain for Fermented Sausage. Genome Announc 1.
doi: 10.1128/genomeA.00475-13 PMID:23846274

Olsvik PA, Hemre GI, Waagbø R. 2013. Exploring early micronutrient deficiencies in rainbow Trout (Oncorhynchus mykiss) by next-generation sequencing technology--from black box to functional genomics. PLoS One 8: e69461.
doi: 10.1371/journal.pone.0069461 PMID:23894486

Olsvik PA, Vikeså V, Lie KK, Hevrøy EM. 2013. Transcriptional responses to temperature and low oxygen stress in Atlantic salmon studied with next-generation sequencing technology. BMC Genomics 14: 817.
doi: 10.1186/1471-2164-14-817 PMID:24261939

Orr RJ, Stüken A, Murray SA, Jakobsen KS. 2013. Evolution and distribution of saxitoxin biosynthesis in dinoflagellates. Mar Drugs 11: 2814-28.
doi: 10.3390/md11082814 PMID:23966031

Panagopoulos I, Micci F, Thorsen J, Haugom L, Buechner J, Kerndrup G, Tierens A, Zeller B, Heim S. 2013. Fusion of ZMYND8 and RELA genes in acute erythroid leukemia. PLoS One 8: e63663.
doi: 10.1371/journal.pone.0063663 PMID:23667654

Star B, Haverkamp TH, Jentoft S, Jakobsen KS. 2013. Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location. BMC Microbiol 13: 248.
doi: 10.1186/1471-2180-13-248 PMID:24206635

Stokke R, Hocking WP, Steinsbu BO, Steen IH. 2013. Complete Genome Sequence of the Thermophilic and Facultatively Chemolithoautotrophic Sulfate Reducer Archaeoglobus sulfaticallidus Strain PM70-1T. Genome Announc 1.
doi: 10.1128/genomeA.00406-13 PMID:23833130

Vik U, Logares R, Blaalid R, Halvorsen R, Carlsen T, Bakke I, Kolstø AB, Økstad OA, Kauserud H. 2013. Different bacterial communities in ectomycorrhizae and surrounding soil. Sci Rep 3: 3471.
doi: 10.1038/srep03471 PMID:24326907

Orr RJ, Stüken A, Murray SA, Jakobsen KS. 2013. Evolutionary acquisition and loss of saxitoxin biosynthesis in dinoflagellates: the second "core" gene, sxtG. Appl Environ Microbiol 79: 2128-36.
doi: 10.1128/AEM.03279-12 PMID:23335767

Panagopoulos I, Thorsen J, Gorunova L, Micci F, Haugom L, Davidson B, Heim S. 2013. RNA sequencing identifies fusion of the EWSR1 and YY1 genes in mesothelioma with t(14;22)(q32;q12). Genes Chromosomes Cancer 52: 733-40.
doi: 10.1002/gcc.22068 PMID:23630070

Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L. 2013. Substantial loss of conserved and gain of novel MicroRNA families in flatworms. Mol Biol Evol 30: 2619-28.
doi: 10.1093/molbev/mst155 PMID:24025793

Uzelac G, Kojic M, Lozo J, Aleksandrzak-Piekarczyk T, Gabrielsen C, Kristensen T, Nes IF, Diep DB, Topisirovic L. 2013. A Zn-dependent metallopeptidase is responsible for sensitivity to LsbB, a class II leaderless bacteriocin of Lactococcus lactis subsp. lactis BGMN1-5. J Bacteriol 195: 5614-21.
doi: 10.1128/JB.00859-13 PMID:24123824

Müller AL, de Rezende JR, Hubert CR, Kjeldsen KU, Lagkouvardos I, Berry D, Jørgensen BB, Loy A. 2014. Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents. ISME J 8: 1153-65.
doi: 10.1038/ismej.2013.225 PMID:24351936

Brembu T, Winge P, Tooming-Klunderud A, Nederbragt AJ, Jakobsen KS, Bones AM. 2014. The chloroplast genome of the diatom Seminavis robusta: new features introduced through multiple mechanisms of horizontal gene transfer. Mar Genomics 16: 17-27.
doi: 10.1016/j.margen.2013.12.002 PMID:24365712

Liu B, Frostegård A, Shapleigh JP. 2013. Draft genome sequences of five strains in the genus thauera. Genome Announc 1.
doi: 10.1128/genomeA.00052-12 PMID:23405361

Panagopoulos I, Thorsen J, Gorunova L, Haugom L, Bjerkehagen B, Davidson B, Heim S, Micci F. 2013. Fusion of the ZC3H7B and BCOR genes in endometrial stromal sarcomas carrying an X;22-translocation. Genes Chromosomes Cancer 52: 610-8.
doi: 10.1002/gcc.22057 PMID:23580382

Yamamoto ML, Maier I, Dang AT, Berry D, Liu J, Ruegger PM, Yang JI, Soto PA, Presley LL, Reliene R, Westbrook AM, Wei B, Loy A, Chang C, Braun J, Borneman J, Schiestl RH. 2013. Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity. Cancer Res 73: 4222-32.
doi: 10.1158/0008-5472.CAN-13-0022 PMID:23860718

Eme L, Reigstad LJ, Spang A, Lanzén A, Weinmaier T, Rattei T, Schleper C, Brochier-Armanet C. 2013. Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota. Res Microbiol 164: 425-38.
doi: 10.1016/j.resmic.2013.02.006 PMID:23470515

Lindner DL, Carlsen T, Henrik Nilsson R, Davey M, Schumacher T, Kauserud H. 2013. Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi. Ecol Evol 3: 1751-64.
doi: 10.1002/ece3.586 PMID:23789083

Olsvik PA, Berg V, Lyche JL. 2013. Transcriptional profiling in burbot (Lota lota) from Lake Mjøsa--a Norwegian Lake contaminated by several organic pollutants. Ecotoxicol Environ Saf 92: 94-103.
doi: 10.1016/j.ecoenv.2013.02.019 PMID:23582132

Blaalid R, Kumar S, Nilsson RH, Abarenkov K, Kirk PM, Kauserud H. 2013. ITS1 versus ITS2 as DNA metabarcodes for fungi. Mol Ecol Resour 13: 218-24.
doi: 10.1111/1755-0998.12065 PMID:23350562

Peña-Diaz J, Hegre SA, Anderssen E, Aas PA, Mjelle R, Gilfillan GD, Lyle R, Drabløs F, Krokan HE, Sætrom P. 2013. Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Nucleic Acids Res 41: 2846-56.
doi: 10.1093/nar/gks1336 PMID:23325852

Hagen IJ, Billing AM, Rønning B, Pedersen SA, Pärn H, Slate J, Jensen H. 2013. The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus). Mol Ecol Resour 13: 429-39.
doi: 10.1111/1755-0998.12088 PMID:23480404

Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS. 2013. From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains. Appl Environ Microbiol 79: 6803-12.
doi: 10.1128/AEM.01455-13 PMID:23995927

Yao F, Vik U, Brysting AK, Carlsen T, Halvorsen R, Kauserud H. 2013. Substantial compositional turnover of fungal communities in an alpine ridge-to-snowbed gradient. Mol Ecol 22: 5040-52.
doi: 10.1111/mec.12437 PMID:23962113

Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ. 2013. Profiling microRNA expression in bovine alveolar macrophages using RNA-seq. Vet Immunol Immunopathol 155: 238-44.
doi: 10.1016/j.vetimm.2013.08.004 PMID:24021155

Liang Z, Demko V, Wilson RC, Johnson KA, Ahmad R, Perroud PF, Quatrano R, Zhao S, Shalchian-Tabrizi K, Otegui MS, Olsen OA, Johansen W. 2013. The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. Plant J 75: 742-54.
doi: 10.1111/tpj.12235 PMID:23663131

Urich T, Lanzén A, Stokke R, Pedersen RB, Bayer C, Thorseth IH, Schleper C, Steen IH, Ovreas L. 2014. Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics. Environ Microbiol 16: 2699-710.
doi: 10.1111/1462-2920.12283 PMID:24112684

Præsteng KE, Pope PB, Cann IK, Mackie RI, Mathiesen SD, Folkow LP, Eijsink VG, Sundset MA. 2013. Probiotic dosing of Ruminococcus flavefaciens affects rumen microbiome structure and function in reindeer. Microb Ecol 66: 840-9.
doi: 10.1007/s00248-013-0279-z PMID:23959114

Published June 21, 2022 10:12 AM - Last modified June 21, 2022 10:12 AM