Publications 2012


Logares R, Lindström ES, Langenheder S, Logue JB, Paterson H, Laybourn-Parry J, Rengefors K, Tranvik L, Bertilsson S. 2013. Biogeography of bacterial communities exposed to progressive long-term environmental change. ISME J 7: 937-48.
doi: 10.1038/ismej.2012.168 PMID:23254515

Sokol L, Cripe L, Kantarjian H, Sekeres MA, Parmar S, Greenberg P, Goldberg SL, Bhushan V, Shammo J, Hohl R, Verma A, Garcia-Manero G, Li YP, Lowe A, Zhu J, List AF. 2013. Randomized, dose-escalation study of the p38α MAPK inhibitor SCIO-469 in patients with myelodysplastic syndrome. Leukemia 27: 977-80.
doi: 10.1038/leu.2012.264 PMID:23032694

Voso MT, Fabiani E, Fianchi L, Falconi G, Criscuolo M, Santangelo R, Chiusolo P, Betti S, D'Alo' F, Hohaus S, De Stefano V, Leone G. 2013. Mutations of epigenetic regulators and of the spliceosome machinery in therapy-related myeloid neoplasms and in acute leukemias evolved from chronic myeloproliferative diseases. Leukemia 27: 982-5.
doi: 10.1038/leu.2012.267 PMID:22964944

Micci F, Thorsen J, Panagopoulos I, Nyquist KB, Zeller B, Tierens A, Heim S. 2013. High-throughput sequencing identifies an NFIA/CBFA2T3 fusion gene in acute erythroid leukemia with t(1;16)(p31;q24). Leukemia 27: 980-2.
doi: 10.1038/leu.2012.266 PMID:23032695

Moen B, Rudi K, Bore E, Langsrud S. 2012. Subminimal inhibitory concentrations of the disinfectant benzalkonium chloride select for a tolerant subpopulation of Escherichia coli with inheritable characteristics. Int J Mol Sci 13: 4101-23.
doi: 10.3390/ijms13044101 PMID:22605968

Rudi K, Moen B, Sekelja M, Frisli T, Lee MR. 2012. An eight-year investigation of bovine livestock fecal microbiota. Vet Microbiol 160: 369-77.
doi: 10.1016/j.vetmic.2012.06.003 PMID:22749759

Heggeset TM, Krog A, Balzer S, Wentzel A, Ellingsen TE, Brautaset T. 2012. Genome sequence of thermotolerant Bacillus methanolicus: features and regulation related to methylotrophy and production of L-lysine and L-glutamate from methanol. Appl Environ Microbiol 78: 5170-81.
doi: 10.1128/AEM.00703-12 PMID:22610424

Farup PG, Jacobsen M, Ligaarden SC, Rudi K. 2012. Probiotics, symptoms, and gut microbiota: what are the relations? A randomized controlled trial in subjects with irritable bowel syndrome. Gastroenterol Res Pract 2012: 214102.
doi: 10.1155/2012/214102 PMID:22899904

Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H. 2012. Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches. J Microbiol Methods 91: 106-13.
doi: 10.1016/j.mimet.2012.07.017 PMID:22849829

Blaalid R, Carlsen T, Kumar S, Halvorsen R, Ugland KI, Fontana G, Kauserud H. 2012. Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing. Mol Ecol 21: 1897-908.
doi: 10.1111/j.1365-294x.2011.05214.x PMID:22590726

Fortunato S, Adamski M, Bergum B, Guder C, Jordal S, Leininger S, Zwafink C, Rapp HT, Adamska M. 2012. Genome-wide analysis of the sox family in the calcareous sponge Sycon ciliatum: multiple genes with unique expression patterns. Evodevo 3: 14.
doi: 10.1186/2041-9139-3-14 PMID:22824100

Bellemain E, Davey ML, Kauserud H, Epp LS, Boessenkool S, Coissac E, Geml J, Edwards M, Willerslev E, Gussarova G, Taberlet P, Haile J, Brochmann C. 2013. Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environ Microbiol 15: 1176-89.
doi: 10.1111/1462-2920.12020 PMID:23171292

Bråte J, Krabberød AK, Dolven JK, Ose RF, Kristensen T, Bjørklund KR, Shalchian-Tabrizi K. 2012. Radiolaria associated with large diversity of marine alveolates. Protist 163: 767-77.
doi: 10.1016/j.protis.2012.04.004 PMID:22658831

Carlsen T, Aas AB, Lindner D, Vrålstad T, Schumacher T, Kauserud H. 2012. Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?. Fungal Ecology 5: 747-9.
doi: 10.1016/j.funeco.2012.06.003

Epp LS, Boessenkool S, Bellemain EP, Haile J, Esposito A, Riaz T, Erséus C, Gusarov VI, Edwards ME, Johnsen A, Stenøien HK, Hassel K, Kauserud H, Yoccoz NG, Bråthen KA, Willerslev E, Taberlet P, Coissac E, Brochmann C. 2012. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol Ecol 21: 1821-33.
doi: 10.1111/j.1365-294X.2012.05537.x PMID:22486821

Espelund M, Minge MA, Gabrielsen TM, Nederbragt AJ, Shalchian-Tabrizi K, Otis C, Turmel M, Lemieux C, Jakobsen KS. 2012. Genome fragmentation is not confined to the peridinin plastid in dinoflagellates. PLoS One 7: e38809.
doi: 10.1371/journal.pone.0038809 PMID:22719952

Frisli T, Haverkamp TH, Jakobsen KS, Stenseth NC, Rudi K. 2013. Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data. J Appl Microbiol 114: 141-51.
doi: 10.1111/jam.12035 PMID:23039191

Hamfjord J, Stangeland AM, Hughes T, Skrede ML, Tveit KM, Ikdahl T, Kure EH. 2012. Differential expression of miRNAs in colorectal cancer: comparison of paired tumor tissue and adjacent normal mucosa using high-throughput sequencing. PLoS One 7: e34150.
doi: 10.1371/journal.pone.0034150 PMID:22529906

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2012. Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea. BMC Microbiol 12: 203.
doi: 10.1186/1471-2180-12-203 PMID:22966776

Jaeschke A, Jørgensen SL, Bernasconi SM, Pedersen RB, Thorseth IH, Früh-Green GL. 2012. Microbial diversity of Loki's Castle black smokers at the Arctic Mid-Ocean Ridge. Geobiology 10: 548-61.
doi: 10.1111/gbi.12009 PMID:23006788

Ougland R, Lando D, Jonson I, Dahl JA, Moen MN, Nordstrand LM, Rognes T, Lee JT, Klungland A, Kouzarides T, Larsen E. 2012. ALKBH1 is a histone H2A dioxygenase involved in neural differentiation. Stem Cells 30: 2672-82.
doi: 10.1002/stem.1228 PMID:22961808

Radax R, Rattei T, Lanzen A, Bayer C, Rapp HT, Urich T, Schleper C. 2012. Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. Environ Microbiol 14: 1308-24.
doi: 10.1111/j.1462-2920.2012.02714.x PMID:22364353

Sorte H, Mørkrid L, Rødningen O, Kulseth MA, Stray-Pedersen A, Matthijs G, Race V, Houge G, Fiskerstrand T, Bjurulf B, Lyle R, Prescott T. 2012. Severe ALG8-CDG (CDG-Ih) associated with homozygosity for two novel missense mutations detected by exome sequencing of candidate genes. Eur J Med Genet 55: 196-202.
doi: 10.1016/j.ejmg.2012.01.003 PMID:22306853

Squadrito ML, Pucci F, Magri L, Moi D, Gilfillan GD, Ranghetti A, Casazza A, Mazzone M, Lyle R, Naldini L, De Palma M. 2012. miR-511-3p modulates genetic programs of tumor-associated macrophages. Cell Rep 1: 141-54.
doi: 10.1016/j.celrep.2011.12.005 PMID:22832163

Roalkvam I, Dahle H, Chen Y, Jørgensen SL, Haflidason H, Steen IH. 2012. Fine-Scale Community Structure Analysis of ANME in Nyegga Sediments with High and Low Methane Flux. Front Microbiol 3: 216.
doi: 10.3389/fmicb.2012.00216 PMID:22715336

Gabrielsen C, Brede DA, Hernández PE, Nes IF, Diep DB. 2012. Genome sequence of the bacteriocin-producing strain Lactococcus garvieae DCC43. J Bacteriol 194: 6976-7.
doi: 10.1128/JB.01864-12 PMID:23209230

Jørgensen MH, Lagesen K, Mable BK, Brysting AK. 2012. Using high-throughput sequencing to investigate the evolution of self-incompatibility genes in the Brassicaceae: strategies and challenges. Plant Ecology & Diversity 5: 473-84.
doi: 10.1080/17550874.2012.748098

Straub T, Zabel A, Gilfillan GD, Feller C, Becker PB. 2013. Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq. Genome Res 23: 473-85.
doi: 10.1101/gr.146407.112 PMID:23233545

Robertson AB, Dahl JA, Ougland R, Klungland A. 2012. Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads. Nat Protoc 7: 340-50.
doi: 10.1038/nprot.2011.443 PMID:22281869

Undlien DE. 2012. Individuell genomsekvensering. Tidsskr Nor Laegeforen 132: 264.
doi: 10.4045/tidsskr.11.1490 PMID:22314723

Zhao S, Burki F, Bråte J, Keeling PJ, Klaveness D, Shalchian-Tabrizi K. 2012. Collodictyon--an ancient lineage in the tree of eukaryotes. Mol Biol Evol 29: 1557-68.
doi: 10.1093/molbev/mss001 PMID:22319147

Bengtsson MM, Sjøtun K, Lanzén A, Ovreås L. 2012. Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea. ISME J 6: 2188-98.
doi: 10.1038/ismej.2012.67 PMID:22763650

Stokke R, Roalkvam I, Lanzen A, Haflidason H, Steen IH. 2012. Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments. Environ Microbiol 14: 1333-46.
doi: 10.1111/j.1462-2920.2012.02716.x PMID:22404914

Sogge H, Rohrlack T, Rounge TB, Sønstebø JH, Tooming-Klunderud A, Kristensen T, Jakobsen KS. 2013. Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix freshwater strains. Appl Environ Microbiol 79: 508-15.
doi: 10.1128/AEM.02417-12 PMID:23124237

Sridhar S, Sharma A, Kongshaug H, Nilsen F, Jonassen I. 2012. Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity. BMC Genomics 13: 598.
doi: 10.1186/1471-2164-13-598 PMID:23131096

Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C. 2013. Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Mol Ecol 22: 87-101.
doi: 10.1111/mec.12108 PMID:23163508

Gilfillan GD, Hughes T, Sheng Y, Hjorthaug HS, Straub T, Gervin K, Harris JR, Undlien DE, Lyle R. 2012. Limitations and possibilities of low cell number ChIP-seq. BMC Genomics 13: 645.
doi: 10.1186/1471-2164-13-645 PMID:23171294

Davey ML, Heegaard E, Halvorsen R, Kauserud H, Ohlson M. 2013. Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient. Mol Ecol 22: 368-83.
doi: 10.1111/mec.12122 PMID:23190367

Jorgensen SL, Hannisdal B, Lanzén A, Baumberger T, Flesland K, Fonseca R, Ovreås L, Steen IH, Thorseth IH, Pedersen RB, Schleper C. 2012. Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge. Proc Natl Acad Sci U S A 109: E2846-55.
doi: 10.1073/pnas.1207574109 PMID:23027979

Davey ML, Heegaard E, Halvorsen R, Ohlson M, Kauserud H. 2012. Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing. New Phytol 195: 844-56.
doi: 10.1111/j.1469-8137.2012.04215.x PMID:22758207

Leidenroth A, Sorte HS, Gilfillan G, Ehrlich M, Lyle R, Hewitt JE. 2012. Diagnosis by sequencing: correction of misdiagnosis from FSHD2 to LGMD2A by whole-exome analysis. Eur J Hum Genet 20: 999-1003.
doi: 10.1038/ejhg.2012.42 PMID:22378277

Tveit A, Schwacke R, Svenning MM, Urich T. 2013. Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms. ISME J 7: 299-311.
doi: 10.1038/ismej.2012.99 PMID:22955232

Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS. 2012. Alterations of microbiota in urine from women with interstitial cystitis. BMC Microbiol 12: 205.
doi: 10.1186/1471-2180-12-205 PMID:22974186

Nordstrand LM, Furu K, Paulsen J, Rognes T, Klungland A. 2012. Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nucleic Acids Res 40: 10950-63.
doi: 10.1093/nar/gks839 PMID:22965116

Published June 21, 2022 10:11 AM - Last modified June 21, 2022 10:11 AM