Publications 2011

 

Høvik H, Yu WH, Olsen I, Chen T. 2012. Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83. J Bacteriol 194: 100-14.
doi: 10.1128/JB.06385-11 PMID:22037400

Pester M, Rattei T, Flechl S, Gröngröft A, Richter A, Overmann J, Reinhold-Hurek B, Loy A, Wagner M. 2012. amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions. Environ Microbiol 14: 525-39.
doi: 10.1111/j.1462-2920.2011.02666.x PMID:22141924

Shalchian-Tabrizi K, Reier-Røberg K, Ree DK, Klaveness D, Bråte J. 2011. Marine-freshwater colonizations of haptophytes inferred from phylogeny of environmental 18S rDNA sequences. J Eukaryot Microbiol 58: 315-8.
doi: 10.1111/j.1550-7408.2011.00547.x PMID:21518078

Sodeland M, Grove H, Kent M, Taylor S, Svendsen M, Hayes BJ, Lien S. 2011. Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle. BMC Genet 12: 70.
doi: 10.1186/1471-2156-12-70 PMID:21835015

Klaveness D, Bråte J, Patil V, Shalchian-Tabrizi K, Kluge R, Gislerød HR, Jakobsen KS. 2011. The 18S and 28S rDNA identity and phylogeny of the common lotic chrysophyte. European Journal of Phycology 46: 282-91.
doi: 10.1080/09670262.2011.598950

Kauserud H, Kumar S, Brysting AK, Nordén J, Carlsen T. 2012. High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples. Mycorrhiza 22: 309-15.
doi: 10.1007/s00572-011-0403-1 PMID:21779811

Boessenkool S, Epp LS, Haile J, Bellemain E, Edwards M, Coissac E, Willerslev E, Brochmann C. 2012. Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA. Mol Ecol 21: 1806-15.
doi: 10.1111/j.1365-294X.2011.05306.x PMID:21988749

Lindqvist M, Isaksson B, Grub C, Jonassen TØ, Hällgren A. 2012. Detection and characterisation of SCCmec remnants in multiresistant methicillin-susceptible Staphylococcus aureus causing a clonal outbreak in a Swedish county. Eur J Clin Microbiol Infect Dis 31: 141-7.
doi: 10.1007/s10096-011-1286-y PMID:21590357

Selmer KK, Gilfillan GD, Strømme P, Lyle R, Hughes T, Hjorthaug HS, Brandal K, Nakken S, Misceo D, Egeland T, Munthe LA, Braekken SK, Undlien DE. 2012. A mild form of Mucopolysaccharidosis IIIB diagnosed with targeted next-generation sequencing of linked genomic regions. Eur J Hum Genet 20: 58-63.
doi: 10.1038/ejhg.2011.126 PMID:21712855

Danielsson M, Lundén K, Elfstrand M, Hu J, Zhao T, Arnerup J, Ihrmark K, Swedjemark G, Borg-Karlson AK, Stenlid J. 2011. Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection. BMC Plant Biol 11: 154.
doi: 10.1186/1471-2229-11-154 PMID:22067529

Gabrielsen TM, Minge MA, Espelund M, Tooming-Klunderud A, Patil V, Nederbragt AJ, Otis C, Turmel M, Shalchian-Tabrizi K, Lemieux C, Jakobsen KS. 2011. Genome evolution of a tertiary dinoflagellate plastid. PLoS One 6: e19132.
doi: 10.1371/journal.pone.0019132 PMID:21541332

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2011. A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments. BMC Microbiol 11: 221.
doi: 10.1186/1471-2180-11-221 PMID:21970369

Kumar S, Carlsen T, Mevik BH, Enger P, Blaalid R, Shalchian-Tabrizi K, Kauserud H. 2011. CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics 12: 182.
doi: 10.1186/1471-2105-12-182 PMID:21599929

Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS. 2011. Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons. BMC Microbiol 11: 244.
doi: 10.1186/1471-2180-11-244 PMID:22047020

Stüken A, Orr RJ, Kellmann R, Murray SA, Neilan BA, Jakobsen KS. 2011. Discovery of nuclear-encoded genes for the neurotoxin saxitoxin in dinoflagellates. PLoS One 6: e20096.
doi: 10.1371/journal.pone.0020096 PMID:21625593

Kotlar HK, Lewin A, Johansen J, Throne-Holst M, Haverkamp T, Markussen S, Winnberg A, Ringrose P, Aakvik T, Ryeng E, Jakobsen K, Drabløs F, Valla S. 2011. High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environ Microbiol Rep 3: 674-81.
doi: 10.1111/j.1758-2229.2011.00279.x PMID:23761356

Logue JB, Langenheder S, Andersson AF, Bertilsson S, Drakare S, Lanzén A, Lindström ES. 2012. Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships. ISME J 6: 1127-36.
doi: 10.1038/ismej.2011.184 PMID:22170419

Hildahl J, Sandvik GK, Edvardsen RB, Fagernes C, Norberg B, Haug TM, Weltzien FA. 2011. Identification and gene expression analysis of three GnRH genes in female Atlantic cod during puberty provides insight into GnRH variant gene loss in fish. Gen Comp Endocrinol 172: 458-67.
doi: 10.1016/j.ygcen.2011.04.010 PMID:21521645

Berry D, Ben Mahfoudh K, Wagner M, Loy A. 2011. Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Appl Environ Microbiol 77: 7846-9.
doi: 10.1128/AEM.05220-11 PMID:21890669

Roalkvam I, Jørgensen SL, Chen Y, Stokke R, Dahle H, Hocking WP, Lanzén A, Haflidason H, Steen IH. 2011. New insight into stratification of anaerobic methanotrophs in cold seep sediments. FEMS Microbiol Ecol 78: 233-43.
doi: 10.1111/j.1574-6941.2011.01153.x PMID:21676010

Lanzén A, Jørgensen SL, Bengtsson MM, Jonassen I, Øvreås L, Urich T. 2011. Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA. FEMS Microbiol Ecol 77: 577-89.
doi: 10.1111/j.1574-6941.2011.01138.x PMID:21627670

Hildahl J, Sandvik GK, Edvardsen RB, Norberg B, Haug TM, Weltzien FA. 2011. Four gonadotropin releasing hormone receptor genes in Atlantic cod are differentially expressed in the brain and pituitary during puberty. Gen Comp Endocrinol 173: 333-45.
doi: 10.1016/j.ygcen.2011.06.002 PMID:21704626

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS. 2011. The genome sequence of Atlantic cod reveals a unique immune system. Nature 477: 207-10.
doi: 10.1038/nature10342 PMID:21832995

Published June 21, 2022 10:11 AM - Last modified June 21, 2022 10:11 AM