Publications
In case we had missed your publication in the list below, please let us know through our publication registration form.
2022
Umu SU, Langseth H, Zuber V, Helland Å, Lyle R, Rounge TB. 2022. Serum RNAs can predict lung cancer up to 10 years prior to diagnosis. Elife 11.
doi: 10.7554/eLife.71035 PMID:35147498
Ferchaud AL, Mérot C, Normandeau E, Ragoussis J, Babin C, Djambazian H, Bérubé P, Audet C, Treble M, Walkusz W, Bernatchez L. 2022. Chromosome-level assembly reveals a putative Y-autosomal fusion in the sex determination system of the Greenland Halibut (Reinhardtius hippoglossoides). G3 (Bethesda) 12.
doi: 10.1093/g3journal/jkab376 PMID:34791178
Gabed N, Verret F, Peticca A, Kryvoruchko I, Gastineau R, Bosson O, Séveno J, Davidovich O, Davidovich N, Witkowski A, Kristoffersen JB, Benali A, Ioannou E, Koutsaviti A, Roussis V, Gâteau H, Phimmaha S, Leignel V, Badawi M, Khiar F, Francezon N, Fodil M, Pasetto P, Mouget JL. 2022. What Was Old Is New Again: The Pennate Diatom Haslea ostrearia (Gaillon) Simonsen in the Multi-Omic Age. Mar Drugs 20.
doi: 10.3390/md20040234 PMID:35447907
Maharajan AD, Hjerde E, Hansen H, Willassen NP. 2022. Quorum Sensing Controls the CRISPR and Type VI Secretion Systems in Aliivibrio wodanis 06/09/139. Front Vet Sci 9: 799414.
doi: 10.3389/fvets.2022.799414 PMID:35211539
Strømme JM, Johannessen B, Kidd SG, Bogaard M, Carm KT, Zhang X, Sveen A, Mathelier A, Lothe RA, Axcrona U, Axcrona K, Skotheim RI. 2022. Expressed prognostic biomarkers for primary prostate cancer independent of multifocality and transcriptome heterogeneity. Cancer Gene Ther.
doi: 10.1038/s41417-022-00444-7 PMID:35194199
Morales-Lange B, Djordjevic B, Gaudhaman A, Press CM, Olson J, Mydland LT, Mercado L, Imarai M, Castex M, Øverland M. 2022. Dietary Inclusion of Hydrolyzed Debaryomyces hansenii Yeasts Modulates Physiological Responses in Plasma and Immune Organs of Atlantic Salmon (Salmo salar) Parr Exposed to Acute Hypoxia Stress. Front Physiol 13: 836810.
doi: 10.3389/fphys.2022.836810 PMID:35418880
Knödlseder N, Nevot G, Fábrega MJ, Mir-Pedrol J, Sanvicente-García M, Campamà-Sanz N, Paetzold B, Lood R, Güell M. 2022. Engineering selectivity of Cutibacterium acnes phages by epigenetic imprinting. PLoS Pathog 18: e1010420.
doi: 10.1371/journal.ppat.1010420 PMID:35344565
Thibau A, Hipp K, Vaca DJ, Chowdhury S, Malmström J, Saragliadis A, Ballhorn W, Linke D, Kempf VAJ. 2022. Long-Read Sequencing Reveals Genetic Adaptation of Bartonella Adhesin A Among Different Bartonella henselae Isolates. Front Microbiol 13: 838267.
doi: 10.3389/fmicb.2022.838267 PMID:35197960
Ribarska T, Bjørnstad PM, Sundaram AYM, Gilfillan GD. 2022. Optimization of enzymatic fragmentation is crucial to maximize genome coverage: a comparison of library preparation methods for Illumina sequencing. BMC Genomics 23: 92.
doi: 10.1186/s12864-022-08316-y PMID:35105301
Lindeman I, Polak J, Qiao SW, Holmøy T, Høglund RA, Vartdal F, Berg-Hansen P, Sollid LM, Lossius A. 2022. Stereotyped B-cell responses are linked to IgG constant region polymorphisms in multiple sclerosis. Eur J Immunol 52: 550-565.
doi: 10.1002/eji.202149576 PMID:35094395
Shwe A, Krasnov A, Visnovska T, Ramberg S, Østbye TK, Andreassen R. 2022. Expression Analysis in Atlantic Salmon Liver Reveals miRNAs Associated with Smoltification and Seawater Adaptation. Biology 11: 688.
doi: 10.3390/biology11050688
Matschiner M, Barth JMI, Tørresen OK, Star B, Baalsrud HT, Brieuc MSO, Pampoulie C, Bradbury I, Jakobsen KS, Jentoft S. 2022. Supergene origin and maintenance in Atlantic cod. Nat Ecol Evol 6: 469-481.
doi: 10.1038/s41559-022-01661-x PMID:35177802
Knutsen H, Catarino D, Rogers L, Sodeland M, Mattingsdal M, Jahnke M, Hutchings JA, Mellerud I, Espeland SH, Johanneson K, Roth O, Hansen MM, Jentoft S, André C, Jorde PE. 2022. Combining population genomics with demographic analyses highlights habitat patchiness and larval dispersal as determinants of connectivity in coastal fish species. Mol Ecol 31: 2562-2577.
doi: 10.1111/mec.16415 PMID:35229385
Madsen-Østerbye J, Abdelhalim M, Baudement MO, Collas P. 2022. Local euchromatin enrichment in lamina-associated domains anticipates their repositioning in the adipogenic lineage. Genome Biol 23: 91.
doi: 10.1186/s13059-022-02662-6 PMID:35410387
Orr RJS, Di Martino E, Ramsfjell MH, Gordon DP, Berning B, Chowdhury I, Craig S, Cumming RL, Figuerola B, Florence W, Harmelin JG, Hirose M, Huang D, Jain SS, Jenkins HL, Kotenko ON, Kuklinski P, Lee HE, Madurell T, McCann L, Mello HL, Obst M, Ostrovsky AN, Paulay G, Porter JS, Shunatova NN, Smith AM, Souto-Derungs J, Vieira LM, Voje KL, Waeschenbach A, Zágoršek K, Warnock RCM, Liow LH. 2022. Paleozoic origins of cheilostome bryozoans and their parental care inferred by a new genome-skimmed phylogeny. Sci Adv 8: eabm7452.
doi: 10.1126/sciadv.abm7452 PMID:35353568
Hjorth M, Galigniana NM, Ween O, Ulven SM, Holven KB, Dalen KT, Sæther T. 2022. Postprandial Effects of Salmon Fishmeal and Whey on Metabolic Markers in Serum and Gene Expression in Liver Cells. Nutrients 14.
doi: 10.3390/nu14081593 PMID:35458155
Barrett JH, Khamaiko N, Ferrari G, Cuevas A, Kneale C, Hufthammer AK, Pálsdóttir AH, Star B. 2022. Walruses on the Dnieper: new evidence for the intercontinental trade of Greenlandic ivory in the Middle Ages. Proc Biol Sci 289: 20212773.
doi: 10.1098/rspb.2021.2773 PMID:35382600
Davik J, Røen D, Lysøe E, Buti M, Rossman S, Alsheikh M, Aiden EL, Dudchenko O, Sargent DJ. 2022. A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.). PLoS One 17: e0265096.
doi: 10.1371/journal.pone.0265096 PMID:35294470
Martínez-García L, Ferrari G, Hufthammer AK, Jakobsen KS, Jentoft S, Barrett JH, Star B. 2022. Ancient DNA reveals a southern presence of the Northeast Arctic cod during the Holocene. Biol Lett 18: 20220021.
doi: 10.1098/rsbl.2022.0021 PMID:35506242
Peris D, Lu DS, Kinneberg VB, Methlie IS, Dahl MS, James TY, Kauserud H, Skrede I. 2022. Large-scale fungal strain sequencing unravels the molecular diversity in mating loci maintained by long-term balancing selection. PLoS Genet 18: e1010097.
doi: 10.1371/journal.pgen.1010097 PMID:35358178
Gravningen K, Henriksen S, Hungnes O, Svendsen K, MacDonald E, Schirmer H, Stene-Johansen K, Simonsen GS, Kacelnik O, Elstrøm P, Bragstad K, Rinaldo CH. 2022. Risk factors, immune response and whole-genome sequencing of SARS-CoV-2 in a cruise ship outbreak in Norway. Int J Infect Dis.
doi: 10.1016/j.ijid.2022.02.025 PMID:35189341
Haverkamp THA, Kaspersen H, Øines Ø, Spilsberg B, Telke AA, Lagesen K, Slettemeås JS, Mo SS, Jørgensen HJ, Sekse C. 2022. Closed Genome Sequences of Providencia alcalifaciens Isolates from Dogs. Microbiol Resour Announc 11: e0095521.
doi: 10.1128/mra.00955-21 PMID:35175129
Vestad B, Ueland T, Lerum TV, Dahl TB, Holm K, Barratt-Due A, Kåsine T, Dyrhol-Riise AM, Stiksrud B, Tonby K, Hoel H, Olsen IC, Henriksen KN, Tveita A, Manotheepan R, Haugli M, Eiken R, Berg Å, Halvorsen B, Lekva T, Ranheim T, Michelsen AE, Kildal AB, Johannessen A, Thoresen L, Skudal H, Kittang BR, Olsen RB, Ystrøm CM, Skei NV, Hannula R, Aballi S, Kvåle R, Skjønsberg OH, Aukrust P, Hov JR, Trøseid M. 2022. Respiratory dysfunction three months after severe COVID-19 is associated with gut microbiota alterations. J Intern Med.
doi: 10.1111/joim.13458 PMID:35212063
Kravik IH, Kaspersen H, Sjurseth SK, Jonsson M, David B, Aspholm M, Sekse C. 2022. High sequence similarity between avian pathogenic E. coli isolates from individual birds and within broiler chicken flocks during colibacillosis outbreaks. Veterinary Microbiology.
doi: 10.1016/j.vetmic.2022.109378
Wos G, Macková L, Kubíková K, Kolář F. 2022. Ploidy and local environment drive intraspecific variation in endoreduplication in Arabidopsis arenosa. Am J Bot 109: 259-271.
doi: 10.1002/ajb2.1818 PMID:35137947
Sodeland M, Jentoft S, Jorde PE, Mattingsdal M, Albretsen J, Kleiven AR, Synnes AW, Espeland SH, Olsen EM, Andrè C, Stenseth NC, Knutsen H. 2022. Stabilizing selection on Atlantic cod supergenes through a millennium of extensive exploitation. Proc Natl Acad Sci U S A 119.
doi: 10.1073/pnas.2114904119 PMID:35165196
Sumathipala D, Strømme P, Fattahi Z, Lüders T, Sheng Y, Kahrizi K, Einarsen IH, Sloan JL, Najmabadi H, van den Heuvel L, Wevers RA, Guerrero-Castillo S, Mørkrid L, Valayannopoulos V, Backe PH, Venditti CP, van Karnebeek CD, Nilsen H, Frengen E, Misceo D. 2022. ZBTB11 dysfunction: spectrum of brain abnormalities, biochemical signature and cellular consequences. Brain.
doi: 10.1093/brain/awac034 PMID:35104841
Edvardsen RB, Wallerman O, Furmanek T, Kleppe L, Jern P, Wallberg A, Kjærner-Semb E, Mæhle S, Olausson SK, Sundström E, Harboe T, Mangor-Jensen R, Møgster M, Perrichon P, Norberg B, Rubin CJ. 2022. Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut. PLoS Genet 18: e1010011.
doi: 10.1371/journal.pgen.1010011 PMID:35134055
Sudworth A, Segers FM, Yilmaz B, Guslund NC, Macpherson AJ, Dissen E, Qiao SW, Inngjerdingen M. 2022. Innate lymphoid cell characterization in the rat and their correlation to gut commensal microbes. Eur J Immunol 52: 717-729.
doi: 10.1002/eji.202149639 PMID:35099074
Holmgren A, Hansson L, Bjerkaas-Kjeldal K, Impellizzeri AAR, Gilfillan GD, Djurovic S, Hughes T. 2022. Mapping the expression of an ANK3 isoform associated with bipolar disorder in the human brain. Transl Psychiatry 12: 45.
doi: 10.1038/s41398-022-01784-6 PMID:35091539
Gelpi M, Vestad B, Raju SC, Hansen SH, Høgh J, Midttun Ø, Ueland PM, Ueland T, Benfield T, Kofoed KF, Hov JR, Trøseid M, Nielsen SD. 2022. Association of the kynurenine pathway of tryptophan metabolism with HIV-related gut microbiota alterations and visceral adipose tissue accumulation. J Infect Dis.
doi: 10.1093/infdis/jiac018 PMID:35089326
Sønstebø JH, Trucchi E, Nordén J, Skrede I, Miettinen O, Haridas S, Pangilinan J, Grigoriev IV, Martin F, Kauserud H, Maurice S. 2022. Population genomics of a forest fungus reveals high gene flow and climate adaptation signatures. Mol Ecol 31: 1963-1979.
doi: 10.1111/mec.16369 PMID:35076968
Tansirichaiya S, Goodman RN, Guo X, Bulgasim I, Samuelsen Ø, Al-Haroni M, Roberts AP. 2022. Intracellular Transposition and Capture of Mobile Genetic Elements following Intercellular Conjugation of Multidrug Resistance Conjugative Plasmids from Clinical Enterobacteriaceae Isolates. Microbiol Spectr 10: e0214021.
doi: 10.1128/spectrum.02140-21 PMID:35044219
Dahal-Koirala S, Balaban G, Neumann RS, Scheffer L, Lundin KEA, Greiff V, Sollid LM, Qiao SW, Sandve GK. 2022. TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences. Brief Bioinform 23.
doi: 10.1093/bib/bbab566 PMID:35062022
Bellamy KKL, Skedsmo FS, Hultman J, Arnet EF, Guttersrud OA, Skogmo HK, Thoresen SI, Espenes A, Jäderlund KH, Lingaas F. 2022. A 1 bp deletion in HACE1 causes ataxia in Norwegian elkhound, black. PLoS One 17: e0261845.
doi: 10.1371/journal.pone.0261845 PMID:35061740
Søderstrøm S, Lie KK, Lundebye AK, Søfteland L. 2022. Beauvericin (BEA) and enniatin B (ENNB)-induced impairment of mitochondria and lysosomes - Potential sources of intracellular reactive iron triggering ferroptosis in Atlantic salmon primary hepatocytes. Food Chem Toxicol 161: 112819.
doi: 10.1016/j.fct.2022.112819 PMID:35038498
Spilsberg B, Nilsen HK, Tavornpanich S, Gulla S, Jansen MD, Lagesen K, Colquhoun DJ, Olsen AB. 2022. Tenacibaculosis in Norwegian Atlantic salmon (Salmo salar) cage-farmed in cold sea water is primarily associated with Tenacibaculum finnmarkense genomovar finnmarkense. J Fish Dis 45: 523-534.
doi: 10.1111/jfd.13577 PMID:35001372
Diaz-Lundahl S, Sundaram AY, Gillund P, Gilfillan GD, Olsaker I, Krogenæs A. 2022. Gene Expression in Embryos From Norwegian Red Bulls With High or Low Non Return Rate: An RNA-Seq Study of in vivo-Produced Single Embryos. Front Genet 12.
doi: 10.3389/fgene.2021.780113
Fedorov VB, Trucchi E, Goropashnaya AV, Chr Stenseth N. 2022. Conflicting nuclear and mitogenome phylogenies reveal ancient mitochondrial replacement between two North American species of collared lemmings (Dicrostonyx groenlandicus, D. hudsonius). Mol Phylogenet Evol.
doi: 10.1016/j.ympev.2022.107399 PMID:35026429
Vigeland MD, Flåm ST, Vigeland MD, Espeland A, Kristoffersen PM, Vetti N, Wigemyr M, Bråten LCH, Gjefsen E, Schistad EI, Haugen AJ, Froholdt A, Skouen JS, Zwart JA, Storheim K, Pedersen LM, Lie BA. 2022. Correlation between gene expression and MRI STIR signals in patients with chronic low back pain and Modic changes indicates immune involvement. Sci Rep 12: 215.
doi: 10.1038/s41598-021-04189-5 PMID:34997115
Rollins RE, Wülbern J, Röttgerding F, Nowak T, Hepner S, Fingerle V, Margos G, Lin YP, Kraiczy P, Becker NS. 2022. Utilizing two Borrelia bavariensis isolates naturally lacking the PFam54 gene array to elucidate the roles of PFam54-encoded proteins. Appl Environ Microbiol.
doi: 10.1128/AEM.01555-21 PMID:34986011
Dahle SW, Attramadal KJ, Vadstein O, Hestdahl HI, Bakke I. 2022. Microbial community dynamics in a commercial RAS for production of Atlantic salmon fry (Salmo salar). Aquaculture 546: 737382.
doi: 10.1016/j.aquaculture.2021.737382
Akkouh IA, Hribkova H, Grabiec M, Budinska E, Szabo A, Kasparek T, Andreassen OA, Sun YM, Djurovic S. 2022. Derivation and Molecular Characterization of a Morphological Subpopulation of Human iPSC Astrocytes Reveal a Potential Role in Schizophrenia and Clozapine Response. Schizophr Bull 48: 190-198.
doi: 10.1093/schbul/sbab092 PMID:34357384
Varunjikar MS, Moreno-Ibarguen C, Andrade-Martinez JS, Tung HS, Belghit I, Palmblad M, Olsvik PA, Reyes A, Rasinger JD, Lie KK. 2022. Comparing novel shotgun DNA sequencing and state-of-the-art proteomics approaches for authentication of fish species in mixed samples. Food Control 131: 108417.
doi: 10.1016/j.foodcont.2021.108417
2021
Dahms C, Kemppainen P, Zanella LN, Zanella D, Carosi A, Merilä J, Momigliano P. 2022. Cast away in the Adriatic: Low degree of parallel genetic differentiation in three-spined sticklebacks. Mol Ecol 31: 1234-1253.
doi: 10.1111/mec.16295 PMID:34843145
Sætra IM, Burgerhout E, Johnsen H, James P. 2022. Comparative morpho‐physiological aspects and transcriptomics of the gonads from wild caught and enhanced green sea urchin (. Aquaculture Fish & Fisheries 2: 28-43.
doi: 10.1002/aff2.27
Mundra S, Kjønaas OJ, Morgado LN, Krabberød AK, Ransedokken Y, Kauserud H. 2021. Soil depth matters: shift in composition and inter-kingdom co-occurrence patterns of microorganisms in forest soils. FEMS Microbiol Ecol 97.
doi: 10.1093/femsec/fiab022 PMID:33547899
Reinar WB, Lalun VO, Reitan T, Jakobsen KS, Butenko MA. 2021. Length variation in short tandem repeats affects gene expression in natural populations of Arabidopsis thaliana. Plant Cell 33: 2221-2234.
doi: 10.1093/plcell/koab107 PMID:33848350
Mérot C, Berdan EL, Cayuela H, Djambazian H, Ferchaud AL, Laporte M, Normandeau E, Ragoussis J, Wellenreuther M, Bernatchez L. 2021. Locally Adaptive Inversions Modulate Genetic Variation at Different Geographic Scales in a Seaweed Fly. Mol Biol Evol 38: 3953-3971.
doi: 10.1093/molbev/msab143 PMID:33963409
Magnussen T, Johnsen A, Kjærandsen J, Struck TH, Søli GE. 2022. Molecular phylogeny of. Systematic Entomology 47: 267-81.
doi: 10.1111/syen.12529
Cerca J, Rivera-Colón AG, Ferreira MS, Ravinet M, Nowak MD, Catchen JM, Struck TH. 2021. Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species. PeerJ 9: e10896.
doi: 10.7717/peerj.10896 PMID:33614296
Cerca J, Maurstad MF, Rochette NC, Rivera‐Colón AG, Rayamajhi N, Catchen JM, Struck TH, Freckleton R. 2021. Removing the bad apples: A simple bioinformatic method to improve loci‐recovery in de novo RADseq data for non‐model organisms. Methods Ecol Evol 12: 805-17.
doi: 10.1111/2041-210X.13562
Lunde TM, Hjerde E, Al-Haroni M. 2021. Prevalence, diversity and transferability of the Tn916-Tn1545 family ICE in oral streptococci. J Oral Microbiol 13: 1896874.
doi: 10.1080/20002297.2021.1896874 PMID:33796228
Hutin D, Long AS, Sugamori K, Shao P, Singh SK, Rasmussen M, Olafsen NE, Pettersen S, Grimaldi G, Grant DM, Matthews J. 2021. 2,3,7,8-Tetrachlorodibenzo-p-Dioxin (TCDD)-Inducible Poly-ADP-Ribose Polymerase (TIPARP/PARP7) Catalytic Mutant Mice (TiparpH532A) Exhibit Increased Sensitivity to TCDD-Induced Hepatotoxicity and Lethality. Toxicol Sci 183: 154-169.
doi: 10.1093/toxsci/kfab075 PMID:34129049
Winje BA, Ofitserova TS, Brynildsrud OB, Greve-Isdahl M, Bragstad K, Rykkvin R, Hungnes O, Lund HM, Nygård K, Meijerink H, Brandal LT. 2021. Comprehensive Contact Tracing, Testing and Sequencing Show Limited Transmission of SARS-CoV-2 between Children in Schools in Norway, August 2020 to May 2021. Microorganisms 9.
doi: 10.3390/microorganisms9122587 PMID:34946187
Konečná V, Bray S, Vlček J, Bohutínská M, Požárová D, Choudhury RR, Bollmann-Giolai A, Flis P, Salt DE, Parisod C, Yant L, Kolář F. 2021. Parallel adaptation in autopolyploid Arabidopsis arenosa is dominated by repeated recruitment of shared alleles. Nat Commun 12: 4979.
doi: 10.1038/s41467-021-25256-5 PMID:34404804
Bohutínská M, Vlček J, Yair S, Laenen B, Konečná V, Fracassetti M, Slotte T, Kolář F. 2021. Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives. Proc Natl Acad Sci U S A 118.
doi: 10.1073/pnas.2022713118 PMID:34001609
Guderud K, Sunde LH, Flåm ST, Mæhlen MT, Mjaavatten MD, Norli ES, Evenrød IM, Andreassen BK, Franzenburg S, Franke A, Rayner S, Gervin K, Lie BA. 2021. Methotrexate Treatment of Newly Diagnosed RA Patients Is Associated With DNA Methylation Differences at Genes Relevant for Disease Pathogenesis and Pharmacological Action. Front Immunol 12: 713611.
doi: 10.3389/fimmu.2021.713611 PMID:34867944
Ferrari G, Atmore LM, Jentoft S, Jakobsen KS, Makowiecki D, Barrett JH, Star B. 2021. An accurate assignment test for extremely low-coverage whole-genome sequence data. Mol Ecol Resour.
doi: 10.1111/1755-0998.13551 PMID:34779123
Franklin-Alming FV, Kaspersen H, Hetland MAK, Bakksjø RJ, Nesse LL, Leangapichart T, Löhr IH, Telke AA, Sunde M. 2021. Exploring Klebsiella pneumoniae in Healthy Poultry Reveals High Genetic Diversity, Good Biofilm-Forming Abilities and Higher Prevalence in Turkeys Than Broilers. Front Microbiol 12: 725414.
doi: 10.3389/fmicb.2021.725414 PMID:34557173
Heinicke F, Zhong X, Flåm ST, Breidenbach J, Leithaug M, Mæhlen MT, Lillegraven S, Aga AB, Norli ES, Mjaavatten MD, Haavardsholm EA, Zucknick M, Rayner S, Lie BA. 2021. MicroRNA Expression Differences in Blood-Derived CD19+ B Cells of Methotrexate Treated Rheumatoid Arthritis Patients. Front Immunol 12: 663736.
doi: 10.3389/fimmu.2021.663736 PMID:33897713
Kaitetzidou E, Gilfillan GD, Antonopoulou E, Sarropoulou E. 2021. Sex-biased dynamics of three-spined stickleback (Gasterosteus aculeatus) gene expression patterns. Genomics 114: 266-277.
doi: 10.1016/j.ygeno.2021.12.010 PMID:34933072
Lind A, Barlinn R, Landaas ET, Andresen LL, Jakobsen K, Fladeby C, Nilsen M, Bjørnstad PM, Sundaram AYM, Ribarska T, Müller F, Gilfillan GD, Holberg-Petersen M. 2021. Rapid SARS-CoV-2 variant monitoring using PCR confirmed by whole genome sequencing in a high-volume diagnostic laboratory. J Clin Virol 141: 104906.
doi: 10.1016/j.jcv.2021.104906 PMID:34273860
Delgado-Baquerizo M, Eldridge DJ, Liu YR, Sokoya B, Wang JT, Hu HW, He JZ, Bastida F, Moreno JL, Bamigboye AR, Blanco-Pastor JL, Cano-Díaz C, Illán JG, Makhalanyane TP, Siebe C, Trivedi P, Zaady E, Verma JP, Wang L, Wang J, Grebenc T, Peñaloza-Bojacá GF, Nahberger TU, Teixido AL, Zhou XQ, Berdugo M, Duran J, Rodríguez A, Zhou X, Alfaro F, Abades S, Plaza C, Rey A, Singh BK, Tedersoo L, Fierer N. 2021. Global homogenization of the structure and function in the soil microbiome of urban greenspaces. Sci Adv 7.
doi: 10.1126/sciadv.abg5809 PMID:34244148
Tedersoo L, Albertsen M, Anslan S, Callahan B. 2021. Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology. Appl Environ Microbiol 87: e0062621.
doi: 10.1128/AEM.00626-21 PMID:34132589
Parker J, Dubin A, Schneider R, Wagner KS, Jentoft S, Böhne A, Bayer T, Roth O. 2021. Immunological tolerance in the evolution of male pregnancy. Mol Ecol.
doi: 10.1111/mec.16333 PMID:34951070
Christensen M, Jablonski P, Altermark B, Irgum K, Hansen H. 2021. High natural PHA production from acetate in Cobetia sp. MC34 and Cobetia marina DSM 4741T and in silico analyses of the genus specific PhaC2 polymerase variant. Microb Cell Fact 20: 225.
doi: 10.1186/s12934-021-01713-0 PMID:34930259
Hansen CC, Baleka S, Guðjónsdóttir SM, Rasmussen JA, Ballesteros JA, Hallgrimsson GT, Stefansson RA, von Schmalensee M, Skarphédinsson KH, Labansen AL, Leivits M, Skelmose K, Sonne C, Dietz R, Boertmann D, Eulaers I, Martin MD, Pálsson S. 2021. Distinctive mitogenomic lineages within populations of White-tailed Eagles. 139.
doi: 10.1093/ornithology/ukab081
Bohr LL, Youngblom MA, Eldholm V, Pepperell CS. 2021. Genome reorganization during emergence of host-associated Mycobacterium abscessus. Microb Genom 7.
doi: 10.1099/mgen.0.000706 PMID:34874249
Tedersoo L, Mikryukov V, Anslan S, Bahram M, Khalid AN, Corrales A, Agan A, Vasco-Palacios AM, Saitta A, Antonelli A, Rinaldi AC, Verbeken A, Sulistyo BP, Tamgnoue B, Furneaux B, Ritter CD, Nyamukondiwa C, Sharp C, Marín C, Dai DQ, Gohar D, Sharmah D, Biersma EM, Cameron EK, De Crop E, Otsing E, Davydov EA, Albornoz FE, Brearley FQ, Buegger F, Gates G, Zahn G, Bonito G, Hiiesalu I, Hiiesalu I, Zettur I, Barrio IC, Pärn J, Heilmann-Clausen J, Ankuda J, Kupagme JY, Sarapuu J, Maciá-Vicente JG, Fovo JD, Geml J, Alatalo JM, Alvarez-Manjarrez J, Monkai J, Põldmaa K, Runnel K, Adamson K, Bråthen KA, Pritsch K, Tchan KI, Armolaitis K, Hyde KD, Newsham KK, Panksep K, Adebola LA, Lamit LJ, Saba M, da Silva Cáceres ME, Tuomi M, Gryzenhout M, Bauters M, Bálint M, Wijayawardene N, Hagh-Doust N, Yorou NS, Kurina O, Mortimer PE, Meidl P, Nilsson RH, Puusepp R, Casique-Valdés R, Drenkhan R, Garibay-Orijel R, Godoy R, Alfarraj S, Rahimlou S, Põlme S, Dudov SV, Mundra S, Ahmed T, Netherway T, Henkel TW, Roslin T, Fedosov VE, Onipchenko VG, Yasanthika WA, Lim YW, Piepenbring M, Klavina D, Kõljalg U, Abarenkov K. 2021. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. Fungal Diversity 111: 573-88.
doi: 10.1007/s13225-021-00493-7
Nustad HE, Steinsland I, Ollikainen M, Cazaly E, Kaprio J, Benjamini Y, Gervin K, Lyle R. 2021. Modeling dependency structures in 450k DNA methylation data. Bioinformatics.
doi: 10.1093/bioinformatics/btab774 PMID:34788815
Jørgensen HJ, Valheim M, Sekse C, Bergsjø BA, Wisløff H, Nørstebø SF, Skancke E, Lagesen K, Haaland AH, Rodriguez-Campos S, Sjurseth SK, Hofshagen M, Jarp J, Tronerud OH, Johannessen GS, Heggelund M, Rygg S, Christensen E, Boye M, Gjerset B, Sandvik M, Soltvedt EM, Wolff C. 2021. An Official Outbreak Investigation of Acute Haemorrhagic Diarrhoea in Dogs in Norway Points to Providencia alcalifaciens as a Likely Cause. Animals (Basel) 11.
doi: 10.3390/ani11113201 PMID:34827932
Guellil M, Rinaldo N, Zedda N, Kersten O, Gonzalez Muro X, Stenseth NC, Gualdi-Russo E, Bramanti B. 2021. Bioarchaeological insights into the last plague of Imola (1630-1632). Sci Rep 11: 22253.
doi: 10.1038/s41598-021-98214-2 PMID:34782694
Müller O, Seuthe L, Pree B, Bratbak G, Larsen A, Paulsen ML. 2021. How Microbial Food Web Interactions Shape the Arctic Ocean Bacterial Community Revealed by Size Fractionation Experiments. Microorganisms 9.
doi: 10.3390/microorganisms9112378 PMID:34835503
Julin CH, Robertson AH, Hungnes O, Tunheim G, Bekkevold T, Laake I, Aune IF, Killengreen MF, Strand TR, Rykkvin R, Dorenberg DH, Stene-Johansen K, Berg ES, Bodin JE, Oftung F, Steens A, Næss LM. 2021. Household Transmission of SARS-CoV-2: A Prospective Longitudinal Study Showing Higher Viral Load and Increased Transmissibility of the Alpha Variant Compared to Previous Strains. Microorganisms 9.
doi: 10.3390/microorganisms9112371 PMID:34835495
Sanabria AM, Janice J, Hjerde E, Simonsen GS, Hanssen AM. 2021. Shotgun-metagenomics based prediction of antibiotic resistance and virulence determinants in Staphylococcus aureus from periprosthetic tissue on blood culture bottles. Sci Rep 11: 20848.
doi: 10.1038/s41598-021-00383-7 PMID:34675288
Vestad B, Nyman TA, Hove-Skovsgaard M, Stensland M, Hoel H, Trøseid AS, Aspelin T, Aass HCD, Puhka M, Hov JR, Nielsen SD, Øvstebø R, Trøseid M. 2021. Plasma extracellular vesicles in people living with HIV and type 2 diabetes are related to microbial translocation and cardiovascular risk. Sci Rep 11: 21936.
doi: 10.1038/s41598-021-01334-y PMID:34754007
Piras R, Breno M, Valoti E, Alberti M, Iatropoulos P, Mele C, Bresin E, Donadelli R, Cuccarolo P, Smith RJH, Benigni A, Remuzzi G, Noris M. 2021. CFH and CFHR Copy Number Variations in C3 Glomerulopathy and Immune Complex-Mediated Membranoproliferative Glomerulonephritis. Front Genet 12: 670727.
doi: 10.3389/fgene.2021.670727 PMID:34211499
Greenfield MJ, Lach L, Congdon BC, Anslan S, Tedersoo L, Field M, Abell SE. 2021. Consistent patterns of fungal communities within ant-plants across a large geographic range strongly suggest a multipartite mutualism. Mycol Progress 20: 681-99.
doi: 10.1007/s11557-021-01690-z
Agan A, Solheim H, Adamson K, Hietala AM, Tedersoo L, Drenkhan R. 2021. Seasonal Dynamics of Fungi Associated with Healthy and Diseased Pinus sylvestris Needles in Northern Europe. Microorganisms 9.
doi: 10.3390/microorganisms9081757 PMID:34442836
Bender KM, Svenning MM, Hu Y, Richter A, Schückel J, Jørgensen B, Liebner S, Tveit AT. 2021. Microbial responses to herbivory-induced vegetation changes in a high-Arctic peatland. Polar Biol 44: 899-911.
doi: 10.1007/s00300-021-02846-z
Lindeman I, Zhou C, Eggesbø LM, Miao Z, Polak J, Lundin KEA, Jahnsen J, Qiao SW, Iversen R, Sollid LM. 2021. Longevity, clonal relationship, and transcriptional program of celiac disease-specific plasma cells. J Exp Med 218.
doi: 10.1084/jem.20200852 PMID:33095260
Davik J, Wilson RC, Njah RG, Grini PE, Randall SK, Alsheik MK, Sargent DJ. 2021. Genetic mapping and identification of a QTL determining tolerance to freezing stress in Fragaria vesca L. PLoS One 16: e0248089.
doi: 10.1371/journal.pone.0248089 PMID:34019543
Wos G, Bohutínská M, Nosková J, Mandáková T, Kolář F. 2021. Parallelism in gene expression between foothill and alpine ecotypes in Arabidopsis arenosa. Plant J 105: 1211-1224.
doi: 10.1111/tpj.15105 PMID:33258160
West AC, Mizoro Y, Wood SH, Ince LM, Iversen M, Jørgensen EH, Nome T, Sandve SR, Martin SAM, Loudon ASI, Hazlerigg DG. 2021. Immunologic Profiling of the Atlantic Salmon Gill by Single Nuclei Transcriptomics. Front Immunol 12: 669889.
doi: 10.3389/fimmu.2021.669889 PMID:34017342
Konstantinidis I, Anastasiadi D, Sætrom P, Nedoluzhko AV, Mjelle R, Podgorniak T, Piferrer F, Fernandes JMO. 2021. Epigenetic mapping of the somatotropic axis in Nile tilapia reveals differential DNA hydroxymethylation marks associated with growth. Genomics 113: 2953-2964.
doi: 10.1016/j.ygeno.2021.06.037 PMID:34214627
Callejas-Hernández F, Herreros-Cabello A, Del Moral-Salmoral J, Fresno M, Gironès N. 2021. The Complete Mitochondrial DNA of Trypanosoma cruzi: Maxicircles and Minicircles. Front Cell Infect Microbiol 11: 672448.
doi: 10.3389/fcimb.2021.672448 PMID:34268138
Risnes LF, Eggesbø LM, Zühlke S, Dahal-Koirala S, Neumann RS, Lundin KEA, Christophersen A, Sollid LM. 2021. Circulating CD103+ γδ and CD8+ T cells are clonally shared with tissue-resident intraepithelial lymphocytes in celiac disease. Mucosal Immunol 14: 842-851.
doi: 10.1038/s41385-021-00385-8 PMID:33654213
Akkouh IA, Hughes T, Steen VM, Glover JC, Andreassen OA, Djurovic S, Szabo A. 2021. Transcriptome analysis reveals disparate expression of inflammation-related miRNAs and their gene targets in iPSC-astrocytes from people with schizophrenia. Brain Behav Immun 94: 235-244.
doi: 10.1016/j.bbi.2021.01.037 PMID:33571628
Morales-Lange B, Agboola JO, Hansen JØ, Lagos L, Øyås O, Mercado L, Mydland LT, Øverland M. 2021. The Spleen as a Target to Characterize Immunomodulatory Effects of Down-Stream Processed Cyberlindnera jadinii Yeasts in Atlantic Salmon Exposed to a Dietary Soybean Meal Challenge. Front Immunol 12: 708747.
doi: 10.3389/fimmu.2021.708747 PMID:34489959
Guédon R, Maremonti E, Armant O, Galas S, Brede DA, Lecomte-Pradines C. 2021. A systems biology analysis of reproductive toxicity effects induced by multigenerational exposure to ionizing radiation in C. elegans. Ecotoxicol Environ Saf 225: 112793.
doi: 10.1016/j.ecoenv.2021.112793 PMID:34544019
Szabo A, Akkouh IA, Vandenberghe M, Osete JR, Hughes T, Heine V, Smeland OB, Glover JC, Andreassen OA, Djurovic S. 2021. A human iPSC-astroglia neurodevelopmental model reveals divergent transcriptomic patterns in schizophrenia. Transl Psychiatry 11: 554.
doi: 10.1038/s41398-021-01681-4 PMID:34716291
Orr RJS, Di Martino E, Gordon DP, Ramsfjell MH, Mello HL, Smith AM, Liow LH. 2021. A broadly resolved molecular phylogeny of New Zealand cheilostome bryozoans as a framework for hypotheses of morphological evolution. Mol Phylogenet Evol 161: 107172.
doi: 10.1016/j.ympev.2021.107172 PMID:33813020
Herencias C, Rodríguez-Beltrán J, León-Sampedro R, Alonso-Del Valle A, Palkovičová J, Cantón R, San Millán Á. 2021. Collateral sensitivity associated with antibiotic resistance plasmids. Elife 10.
doi: 10.7554/eLife.65130 PMID:33470194
Nilsen M, Lokmic A, Angell IL, Lødrup Carlsen KC, Carlsen KH, Haugen G, Hedlin G, Jonassen CM, Marsland BJ, Nordlund B, Rehbinder EM, Saunders CM, Skjerven HO, Snipen L, Staff AC, Söderhäll C, Vettukattil R, Rudi K. 2021. Fecal Microbiota Nutrient Utilization Potential Suggests Mucins as Drivers for Initial Gut Colonization of Mother-Child-Shared Bacteria. Appl Environ Microbiol 87.
doi: 10.1128/AEM.02201-20 PMID:33452029
Laroche O, Pochon X, Wood SA, Keeley N. 2021. Beyond taxonomy: Validating functional inference approaches in the context of fish-farm impact assessments. Mol Ecol Resour 21: 2264-2277.
doi: 10.1111/1755-0998.13426 PMID:33971078
Yang S, Liebner S, Svenning MM, Tveit AT. 2021. Decoupling of microbial community dynamics and functions in Arctic peat soil exposed to short term warming. Mol Ecol 30: 5094-5104.
doi: 10.1111/mec.16118 PMID:34387003
Gundersen MS, Morelan IA, Andersen T, Bakke I, Vadstein O. 2021. The effect of periodic disturbances and carrying capacity on the significance of selection and drift in complex bacterial communities. ISME COMMUN 1.
doi: 10.1038/s43705-021-00058-4
Ellul RM, Kalatzis PG, Frantzen C, Haugland GT, Gulla S, Colquhoun DJ, Middelboe M, Wergeland HI, Rønneseth A. 2021. Genomic Analysis of Pasteurella atlantica Provides Insight on Its Virulence Factors and Phylogeny and Highlights the Potential of Reverse Vaccinology in Aquaculture. Microorganisms 9.
doi: 10.3390/microorganisms9061215 PMID:34199775
Andresen IJ, Orr RJ, Shalchian-Tabrizi K, Bråte J. 2021. Compartmentalization of mRNAs in the giant, unicellular green alga Acetabularia acetabulum. Algal Research 59: 102440.
doi: 10.1016/j.algal.2021.102440
Egge E, Elferink S, Vaulot D, John U, Bratbak G, Larsen A, Edvardsen B. 2021. An 18S V4 rRNA metabarcoding dataset of protist diversity in the Atlantic inflow to the Arctic Ocean, through the year and down to 1000 m depth. Earth Syst Sci Data 13: 4913-28.
doi: 10.5194/essd-13-4913-2021
Kersten O, Star B, Leigh DM, Anker-Nilssen T, Strøm H, Danielsen J, Descamps S, Erikstad KE, Fitzsimmons MG, Fort J, Hansen ES, Harris MP, Irestedt M, Kleven O, Mallory ML, Jakobsen KS, Boessenkool S. 2021. Complex population structure of the Atlantic puffin revealed by whole genome analyses. Commun Biol 4: 922.
doi: 10.1038/s42003-021-02415-4 PMID:34326442
Martínez-García L, Ferrari G, Oosting T, Ballantyne R, van der Jagt I, Ystgaard I, Harland J, Nicholson R, Hamilton-Dyer S, Baalsrud HT, Brieuc MS, Atmore LM, Burns F, Schmölcke U, Jakobsen KS, Jentoft S, Orton D, Hufthammer AK, Barrett JH, Star B. 2021. Historical Demographic Processes Dominate Genetic Variation in Ancient Atlantic Cod Mitogenomes. Front Ecol Evol 9.
doi: 10.3389/fevo.2021.671281
Hu Q, Poulose N, Girmay S, Helevä A, Doultsinos D, Gondane A, Steele RE, Liu X, Loda M, Liu S, Tang D, Mills IG, Itkonen HM. 2021. Inhibition of CDK9 activity compromises global splicing in prostate cancer cells. RNA Biol.
doi: 10.1080/15476286.2021.1983287 PMID:34592899
Gulbrandsen ØS, Andresen IJ, Krabberød AK, Bråte J, Shalchian-Tabrizi K. 2021. Phylogenomic analysis restructures the ulvophyceae. J Phycol 57: 1223-1233.
doi: 10.1111/jpy.13168 PMID:33721355
Andersen Ø, Johnsen H, Wittmann AC, Harms L, Thesslund T, Berg RS, Siikavuopio S, Mykles DL. 2021. De novo transcriptome assemblies of red king crab (Paralithodes camtschaticus) and snow crab (Chionoecetes opilio) molting gland and eyestalk ganglia - Temperature effects on expression of molting and growth regulatory genes in adult red king crab. Comp Biochem Physiol B Biochem Mol Biol 257: 110678.
doi: 10.1016/j.cbpb.2021.110678 PMID:34655763
Bugten AV, Attramadal KJ, Fossmark RO, Rosten T, Vadstein O, Bakke I. 2021. Changes in rearing water microbiomes in RAS induced by membrane filtration alters the hindgut microbiomes of Atlantic salmon (Salmo salar) parr. Aquaculture.
doi: 10.1016/j.aquaculture.2021.737661
Yao Y, Wyrozżemski Ł, Lundin KEA, Sandve GK, Qiao SW. 2021. Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq. PLoS One 16: e0258029.
doi: 10.1371/journal.pone.0258029 PMID:34618841
Karlsen TR, Kong XY, Holm S, Quiles-Jiménez A, Dahl TB, Yang K, Sagen EL, Skarpengland T, S Øgaard JD, Holm K, Vestad B, Olsen MB, Aukrust P, Bjørås M, Hov JR, Halvorsen B, Gregersen I. 2021. NEIL3-deficiency increases gut permeability and contributes to a pro-atherogenic metabolic phenotype. Sci Rep 11: 19749.
doi: 10.1038/s41598-021-98820-0 PMID:34611194
Andresen AMS, Gjøen T. 2021. Chitosan nanoparticle formulation attenuates poly (I:C) induced innate immune responses against inactivated virus vaccine in Atlantic salmon (Salmo salar). Comp Biochem Physiol Part D Genomics Proteomics 40: 100915.
doi: 10.1016/j.cbd.2021.100915 PMID:34634571
Osnes MN, Alfsnes K, Bråte J, Garcia I, Riis RK, Instefjord KH, Elshaug H, Vollan HS, Moen LV, Pedersen BN, Caugant DA, Stene-Johansen K, Hungnes O, Bragstad K, Brynildsrud O, Eldholm V. 2021. The impact of global lineage dynamics, border restrictions, and emergence of the B.1.1.7 lineage on the SARS-CoV-2 epidemic in Norway. Virus Evol 7: veab086.
doi: 10.1093/ve/veab086 PMID:34659798
Grevskott DH, Ghavidel FZ, Svanevik CS, Marathe NP. 2021. Resistance profiles and diversity of β-lactamases in Escherichia coli strains isolated from city-scale sewage surveillance in Bergen, Norway mimic clinical prevalence. Ecotoxicol Environ Saf 226: 112788.
doi: 10.1016/j.ecoenv.2021.112788 PMID:34571418
Camacho E, González-de la Fuente S, Solana JC, Rastrojo A, Carrasco-Ramiro F, Requena JM, Aguado B. 2021. Gene Annotation and Transcriptome Delineation on a De Novo Genome Assembly for the Reference Leishmania major Friedlin Strain. Genes 12: 1359.
doi: 10.3390/genes12091359
Dichter AA, Schultze TG, Wenigmann A, Ballhorn W, Latz A, Schlüfter E, Ventosilla P, Guerra Allison H, Ugarte-Gil C, Tsukayama P, Kempf VA. 2021. Identification of immunodominant Bartonella bacilliformis proteins: a combined in-silico and serology approach. The Lancet Microbe 2: e685-94.
doi: 10.1016/S2666-5247(21)00184-1
Sætre CLC, Eroukhmanoff F, Rönkä K, Kluen E, Thorogood R, Torrance J, Tracey A, Chow W, Pelan S, Howe K, Jakobsen KS, Tørresen OK. 2021. A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus). Genome Biol Evol 13.
doi: 10.1093/gbe/evab212 PMID:34499122
ter Schure AT, Bajard M, Loftsgarden K, Høeg HI, Ballo E, Bakke J, Støren EW, Iversen F, Kool A, Brysting AK, Krüger K, Boessenkool S. 2021. Anthropogenic and environmental drivers of vegetation change in southeastern Norway during the Holocene. Quaternary Science Reviews 270: 107175.
doi: 10.1016/j.quascirev.2021.107175
Lofthus S, Bakke I, Greer CW, Brakstad OG. 2021. Biodegradation of weathered crude oil by microbial communities in solid and melted sea ice. Mar Pollut Bull 172: 112823.
doi: 10.1016/j.marpolbul.2021.112823 PMID:34454387
Neby M, Kamenova S, Devineau O, Ims RA, Soininen EM. 2021. Issues of under-representation in quantitative DNA metabarcoding weaken the inference about diet of the tundra vole Microtus oeconomus. PeerJ 9: e11936.
doi: 10.7717/peerj.11936 PMID:34527438
Storesund JE, Grevskott DH, Marathe NP, Lunestad BT, Svanevik CS. 2021. Draft Genome Sequence of Hafnia paralvei Strain VBC_1714, Isolated from Frozen Cod Fillet Imported from Russia to Norway. Microbiol Resour Announc 10: e0062421.
doi: 10.1128/MRA.00624-21 PMID:34410149
Hajdarevic R, Lande A, Rekeland I, Rydland A, Strand EB, Sosa DD, Creary LE, Mella O, Egeland T, Saugstad OD, Fluge Ø, Lie BA, Viken MK. 2021. Fine mapping of the major histocompatibility complex (MHC) in myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) suggests involvement of both HLA class I and class II loci. Brain Behav Immun 98: 101-109.
doi: 10.1016/j.bbi.2021.08.219 PMID:34403736
Marathe NP, Svanevik CS, Ghavidel FZ, Grevskott DH. 2021. First report of mobile tigecycline resistance gene tet(X4)-harbouring multidrug-resistant Escherichia coli from wastewater in Norway. J Glob Antimicrob Resist 27: 37-40.
doi: 10.1016/j.jgar.2021.07.019 PMID:34371242
Lanzén A, Dahlgren TG, Bagi A, Hestetun JT. 2021. Benthic eDNA metabarcoding provides accurate assessments of impact from oil extraction, and ecological insights. Ecological Indicators 130: 108064.
doi: 10.1016/j.ecolind.2021.108064
Ottoni C, Borić D, Cheronet O, Sparacello V, Dori I, Coppa A, Antonović D, Vujević D, Price TD, Pinhasi R, Cristiani E. 2021. Tracking the transition to agriculture in Southern Europe through ancient DNA analysis of dental calculus. Proc Natl Acad Sci U S A 118.
doi: 10.1073/pnas.2102116118 PMID:34312252
Awoyemi A, Mayerhofer C, Felix AS, Hov JR, Moscavitch SD, Lappegård KT, Hovland A, Halvorsen S, Halvorsen B, Gregersen I, Svardal A, Berge RK, Hansen SH, Götz A, Holm K, Aukrust P, Åkra S, Seljeflot I, Solheim S, Lorenzo A, Gullestad L, Trøseid M, Broch K. 2021. Rifaximin or Saccharomyces boulardii in heart failure with reduced ejection fraction: Results from the randomized GutHeart trial. EBioMedicine 70: 103511.
doi: 10.1016/j.ebiom.2021.103511 PMID:34329947
Viste R, Lie BA, Viken MK, Rootwelt T, Knudsen-Heier S, Kornum BR. 2021. Narcolepsy type 1 patients have lower levels of effector memory CD4+ T cells compared to their siblings when controlling for H1N1-(Pandemrix™)-vaccination and HLA DQB1∗06:02 status. Sleep Med 85: 271-279.
doi: 10.1016/j.sleep.2021.07.024 PMID:34388506
Herstad KMV, Trosvik P, Haaland AH, Haverkamp THA, de Muinck EJ, Skancke E. 2021. Changes in the fecal microbiota in dogs with acute hemorrhagic diarrhea during an outbreak in Norway. J Vet Intern Med 35: 2177-2186.
doi: 10.1111/jvim.16201 PMID:34288148
Radisic V, Marathe NP. 2021. Genomic characterisation of multidrug-resistant Bacillus toyonensis strain 4HC1 isolated from marine plastic in Norway. J Glob Antimicrob Resist 26: 249-251.
doi: 10.1016/j.jgar.2021.07.002 PMID:34273593
Mellingen RM, Myrmel LS, Lie KK, Rasinger JD, Madsen L, Nøstbakken OJ. 2021. RNA sequencing and proteomic profiling reveal different alterations by dietary methylmercury in the hippocampal transcriptome and proteome in BALB/c mice. Metallomics 13.
doi: 10.1093/mtomcs/mfab022 PMID:33890672
Temesgen TT, Tysnes KR, Robertson LJ. 2021. Use of Oxidative Stress Responses to Determine the Efficacy of Inactivation Treatments on Cryptosporidium Oocysts. Microorganisms 9: 1463.
doi: 10.3390/microorganisms9071463
Robinson N, Karlsen C, Ytteborg E, Krasnov A, Gerwins J, Johnsen H, Kolarevic J. 2021. Skin and bone development in Atlantic salmon (Salmo salar) influenced by hatchery environment. Aquaculture 544: 737155.
doi: 10.1016/j.aquaculture.2021.737155
Fjær R, Marciniak K, Sundnes O, Hjorthaug H, Sheng Y, Hammarström C, Sitek JC, Vigeland MD, Backe PH, Øye AM, Fosse JH, Stav-Noraas TE, Uchiyama Y, Matsumoto N, Comi A, Pevsner J, Haraldsen G, Selmer KK. 2021. A novel somatic mutation in GNB2 provides new insights to the pathogenesis of Sturge-weber syndrome. Hum Mol Genet.
doi: 10.1093/hmg/ddab144 PMID:34124757
López-Muñoz AD, Rastrojo A, Kropp KA, Viejo-Borbolla A, Alcamí A. 2021. Combination of long- and short-read sequencing fully resolves complex repeats of herpes simplex virus 2 strain MS complete genome. Microb Genom 7.
doi: 10.1099/mgen.0.000586 PMID:34170814
Hestetun JT, Lanzén A, Skaar KS, Dahlgren TG. 2021. The impact of DNA extract homogenization and replication on marine sediment metabarcoding diversity and heterogeneity. Environmental DNA 3: 997-1006.
doi: 10.1002/edn3.223
Hestetun JT, Lanzén A, Dahlgren TG. 2021. Grab what you can-an evaluation of spatial replication to decrease heterogeneity in sediment eDNA metabarcoding. PeerJ 9: e11619.
doi: 10.7717/peerj.11619 PMID:34221724
Abiriga D, Jenkins A, Alfsnes K, Vestgarden LS, Klempe H. 2021. Spatiotemporal and seasonal dynamics in the microbial communities of a landfill-leachate contaminated aquifer. FEMS Microbiol Ecol 97.
doi: 10.1093/femsec/fiab086 PMID:34137824
Løvdal T, Brandal LT, Sundaram AY, Naseer U, Roth B, Lunestad BT. 2021. Small-Scale Comparative Genomic Analysis of Listeria monocytogenes Isolated from Environments of Salmon Processing Plants and Human Cases in Norway. Hygiene 1: 43-55.
doi: 10.3390/hygiene1010005
Andresen IJ, Orr RJS, Krabberød AK, Shalchian-Tabrizi K, Bråte J. 2021. Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA. Sci Rep 11: 12820.
doi: 10.1038/s41598-021-92092-4 PMID:34140556
Osete JR, Akkouh IA, de Assis DR, Szabo A, Frei E, Hughes T, Smeland OB, Steen NE, Andreassen OA, Djurovic S. 2021. Lithium increases mitochondrial respiration in iPSC-derived neural precursor cells from lithium responders. Mol Psychiatry 26: 6789-6805.
doi: 10.1038/s41380-021-01164-4 PMID:34075196
Christensen EE, Jørgensen MJ, Nore KG, Dahl TB, Yang K, Ranheim T, Huse C, Lind A, Nur S, Stiksrud B, Jenum S, Tonby K, Holter JC, Holten AR, Halvorsen B, Dyrhol-Riise AM. 2021. Critical COVID-19 is associated with distinct leukocyte phenotypes and transcriptome patterns. J Intern Med 290: 677-692.
doi: 10.1111/joim.13310 PMID:34080738
Jensen S, Frank JA, Arntzen MØ, Duperron S, Vaaje-Kolstad G, Hovland M. 2021. Endozoicomonadaceae symbiont in gills of Acesta clam encodes genes for essential nutrients and polysaccharide degradation. FEMS Microbiol Ecol.
doi: 10.1093/femsec/fiab070 PMID:33988698
Lemma RB, Ledsaak M, Fuglerud BM, Sandve GK, Eskeland R, Gabrielsen OS. 2021. Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB. Sci Rep 11: 9008.
doi: 10.1038/s41598-021-88516-w PMID:33903675
Peñaloza C, Manousaki T, Franch R, Tsakogiannis A, Sonesson A, Aslam ML, Allal F, Bargelloni L, Houston RD, Tsigenopoulos CS. 2021. Development and testing of a combined species SNP array for the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata). Genomics.
doi: 10.1016/j.ygeno.2021.04.038 PMID:33933591
Kallak TK, Bränn E, Fransson E, Johansson Å, Lager S, Comasco E, Lyle R, Skalkidou A. 2021. DNA methylation in cord blood in association with prenatal depressive symptoms. Clin Epigenetics 13: 78.
doi: 10.1186/s13148-021-01054-0 PMID:33845866
Gillard GB, Grønvold L, Røsæg LL, Holen MM, Monsen Ø, Koop BF, Rondeau EB, Gundappa MK, Mendoza J, Macqueen DJ, Rohlfs RV, Sandve SR, Hvidsten TR. 2021. Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication. Genome Biol 22: 103.
doi: 10.1186/s13059-021-02323-0 PMID:33849620
Pinsky ML, Eikeset AM, Helmerson C, Bradbury IR, Bentzen P, Morris C, Gondek-Wyrozemska AT, Baalsrud HT, Brieuc MSO, Kjesbu OS, Godiksen JA, Barth JMI, Matschiner M, Stenseth NC, Jakobsen KS, Jentoft S, Star B. 2021. Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic. Proc Natl Acad Sci U S A 118.
doi: 10.1073/pnas.2025453118 PMID:33827928
Mølmen KS, Hammarström D, Pedersen K, Lian Lie AC, Steile RB, Nygaard H, Khan Y, Hamarsland H, Koll L, Hanestadhaugen M, Eriksen AL, Grindaker E, Whist JE, Buck D, Ahmad R, Strand TA, Rønnestad BR, Ellefsen S. 2021. Vitamin D3 supplementation does not enhance the effects of resistance training in older adults. J Cachexia Sarcopenia Muscle 12: 599-628.
doi: 10.1002/jcsm.12688 PMID:33788419
León-Sampedro R, DelaFuente J, Díaz-Agero C, Crellen T, Musicha P, Rodríguez-Beltrán J, de la Vega C, Hernández-García M, López-Fresneña N, Ruiz-Garbajosa P, Cantón R, Cooper BS, San Millán Á. 2021. Pervasive transmission of a carbapenem resistance plasmid in the gut microbiota of hospitalized patients. Nat Microbiol 6: 606-616.
doi: 10.1038/s41564-021-00879-y PMID:33782584
Buberg ML, Mo SS, Sekse C, Sunde M, Wasteson Y, Witsø IL. 2021. Population structure and uropathogenic potential of extended-spectrum cephalosporin-resistant Escherichia coli from retail chicken meat. BMC Microbiol 21: 94.
doi: 10.1186/s12866-021-02160-y PMID:33781204
Avershina E, Sharma P, Taxt AM, Singh H, Frye SA, Paul K, Kapil A, Naseer U, Kaur P, Ahmad R. 2021. AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in Escherichia coli and Klebsiella pneumoniae. Comput Struct Biotechnol J 19: 1896-1906.
doi: 10.1016/j.csbj.2021.03.027 PMID:33897984
Kloos J, Gama JA, Hegstad J, Samuelsen Ø, Johnsen PJ. 2021. Piggybacking on Niche Adaptation Improves the Maintenance of Multidrug-Resistance Plasmids. Mol Biol Evol 38: 3188-3201.
doi: 10.1093/molbev/msab091 PMID:33760032
Stenmark B, Eriksson L, Thulin Hedberg S, Anton BP, Fomenkov A, Roberts RJ, Mölling P. 2021. Genome-wide methylome analysis of two strains belonging to the hypervirulent Neisseria meningitidis serogroup W ST-11 clonal complex. Sci Rep 11: 6239.
doi: 10.1038/s41598-021-85266-7 PMID:33737546
Mathew KA, Ardelan MV, Villa Gonzalez S, Vadstein O, Vezhapparambu VS, Leiknes Ø, Mankettikkara R, Olsen Y. 2021. Temporal dynamics of carbon sequestration in coastal North Atlantic fjord system as seen through dissolved organic matter characterisation. Sci Total Environ 782: 146402.
doi: 10.1016/j.scitotenv.2021.146402 PMID:33839660
Viste R, Viken MK, Lie BA, Juvodden HT, Nordstrand SEH, Thorsby PM, Rootwelt T, Kornum BR, Knudsen-Heier S. 2021. High nocturnal sleep fragmentation is associated with low T lymphocyte P2Y11 protein levels in narcolepsy type 1. Sleep 44.
doi: 10.1093/sleep/zsab062 PMID:33710305
Narud B, Khezri A, Zeremichael TT, Stenseth EB, Heringstad B, Johannisson A, Morrell JM, Collas P, Myromslien FD, Kommisrud E. 2021. Sperm chromatin integrity and DNA methylation in Norwegian Red bulls of contrasting fertility. Mol Reprod Dev 88: 187-200.
doi: 10.1002/mrd.23461 PMID:33634579
Wos G, Choudhury RR, Kolář F, Parisod C. 2021. Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa. Mob DNA 12: 7.
doi: 10.1186/s13100-021-00236-0 PMID:33639991
Gonzalez-Silva BM, Jonassen KR, Bakke I, Østgaard K, Vadstein O. 2021. Understanding structure/function relationships in nitrifying microbial communities after cross-transfer between freshwater and seawater. Sci Rep 11: 2979.
doi: 10.1038/s41598-021-82272-7 PMID:33536458
Le HTMD, Lie KK, Etayo A, Rønnestad I, Sæle Ø. 2021. Physical and nutrient stimuli differentially modulate gut motility patterns, gut transit rate, and transcriptome in an agastric fish, the ballan wrasse. PLoS One 16: e0247076.
doi: 10.1371/journal.pone.0247076 PMID:33571240
Trucchi E, Benazzo A, Lari M, Iob A, Vai S, Nanni L, Bellucci E, Bitocchi E, Raffini F, Xu C, Jackson SA, Lema V, Babot P, Oliszewski N, Gil A, Neme G, Michieli CT, De Lorenzi M, Calcagnile L, Caramelli D, Star B, de Boer H, Boessenkool S, Papa R, Bertorelle G. 2021. Ancient genomes reveal early Andean farmers selected common beans while preserving diversity. Nat Plants 7: 123-128.
doi: 10.1038/s41477-021-00848-7 PMID:33558754
Brägelmann J, Barahona Ponce C, Marcelain K, Roessler S, Goeppert B, Gallegos I, Colombo A, Sanhueza V, Morales E, Rivera MT, de Toro G, Ortega A, Müller B, Gabler F, Scherer D, Waldenberger M, Reischl E, Boekstegers F, Garate-Calderon V, Umu SU, Rounge TB, Popanda O, Lorenzo Bermejo J. 2021. Epigenome-Wide Analysis of Methylation Changes in the Sequence of Gallstone Disease, Dysplasia, and Gallbladder Cancer. Hepatology 73: 2293-2310.
doi: 10.1002/hep.31585 PMID:33020926
Ferrari G, Cuevas A, Gondek-Wyrozemska AT, Ballantyne R, Kersten O, Pálsdóttir AH, van der Jagt I, Hufthammer AK, Ystgaard I, Wickler S, Bigelow GF, Harland J, Nicholson R, Orton D, Clavel B, Boessenkool S, Barrett JH, Star B. 2021. The preservation of ancient DNA in archaeological fish bone. Journal of Archaeological Science 126: 105317.
doi: 10.1016/j.jas.2020.105317
Blanc-Mathieu R, Dahle H, Hofgaard A, Brandt D, Ban H, Kalinowski J, Ogata H, Sandaa RA. 2021. A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. J Virol.
doi: 10.1128/JVI.02446-20 PMID:33536167
Quilbé J, Lamy L, Brottier L, Leleux P, Fardoux J, Rivallan R, Benichou T, Guyonnet R, Becana M, Villar I, Garsmeur O, Hufnagel B, Delteil A, Gully D, Chaintreuil C, Pervent M, Cartieaux F, Bourge M, Valentin N, Martin G, Fontaine L, Droc G, Dereeper A, Farmer A, Libourel C, Nouwen N, Gressent F, Mournet P, D'Hont A, Giraud E, Klopp C, Arrighi JF. 2021. Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium-legume symbiosis. Nat Commun 12: 829.
doi: 10.1038/s41467-021-21094-7 PMID:33547303
Kaspersen H, Haverkamp THA, Ilag HK, Øines Ø, Sekse C, Slettemeås JS. 2021. Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies. Microbiol Resour Announc 10.
doi: 10.1128/MRA.01190-20 PMID:33509985
Radisic V, Lunestad BT, Sanden M, Bank MS, Marathe NP. 2021. Draft Genome Sequence of Multidrug-Resistant Pseudomonas protegens Strain 11HC2, Isolated from Marine Plastic Collected from the West Coast of Norway. Microbiol Resour Announc 10.
doi: 10.1128/MRA.01285-20 PMID:33446595
Rey S, Jin X, Damsgård B, Bégout ML, Mackenzie S. 2021. Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour. BMC Genomics 22: 33.
doi: 10.1186/s12864-020-07317-z PMID:33413108
2020
Berger TC, Vigeland MD, Hjorthaug HS, Nome CG, Taubøll E, Selmer KK, Heuser K. 2020. Differential Glial Activation in Early Epileptogenesis-Insights From Cell-Specific Analysis of DNA Methylation and Gene Expression in the Contralateral Hippocampus. Front Neurol 11: 573575.
doi: 10.3389/fneur.2020.573575 PMID:33312155
Knotek A, Konečná V, Wos G, Požárová D, Šrámková G, Bohutínská M, Zeisek V, Marhold K, Kolář F. 2020. Parallel Alpine Differentiation in Arabidopsis arenosa. Front Plant Sci 11: 561526.
doi: 10.3389/fpls.2020.561526 PMID:33363550
Yao Y, Zia A, Neumann RS, Pavlovic M, Balaban G, Lundin KEA, Sandve GK, Qiao SW. 2021. T cell receptor repertoire as a potential diagnostic marker for celiac disease. Clin Immunol 222: 108621.
doi: 10.1016/j.clim.2020.108621 PMID:33197618
Radisic V, Nimje PS, Bienfait AM, Marathe NP. 2020. Marine Plastics from Norwegian West Coast Carry Potentially Virulent Fish Pathogens and Opportunistic Human Pathogens Harboring New Variants of Antibiotic Resistance Genes. Microorganisms 8.
doi: 10.3390/microorganisms8081200 PMID:32784594
Jinnerot T, Tomaselli ATP, Johannessen GS, Söderlund R, Urdahl AM, Aspán A, Sekse C. 2020. The prevalence and genomic context of Shiga toxin 2a genes in E. coli found in cattle. PLoS One 15: e0232305.
doi: 10.1371/journal.pone.0232305 PMID:32785271
Caglayan S, Hashim A, Cieslar-Pobuda A, Jensen V, Behringer S, Talug B, Chu DT, Pecquet C, Rogne M, Brech A, Brorson SH, Nagelhus EA, Hannibal L, Boschi A, Taskén K, Staerk J. 2020. Optic Atrophy 1 Controls Human Neuronal Development by Preventing Aberrant Nuclear DNA Methylation. iScience 23: 101154.
doi: 10.1016/j.isci.2020.101154 PMID:32450518
Burton J, Umu SU, Langseth H, Grotmol T, Grimsrud TK, Haugen TB, Rounge TB. 2020. Serum RNA Profiling in the 10-Years Period Prior to Diagnosis of Testicular Germ Cell Tumor. Front Oncol 10: 574977.
doi: 10.3389/fonc.2020.574977 PMID:33251139
Scherer D, Dávila López MD, Goeppert B, Abrahamsson S, González Silos RG, Nova I, Marcelain K, Roa JC, Ibberson D, Umu SU, Rounge TB, Roessler S, Bermejo JL. 2020. RNA Sequencing of Hepatobiliary Cancer Cell Lines: Data and Applications to Mutational and Transcriptomic Profiling. Cancers (Basel) 12.
doi: 10.3390/cancers12092510 PMID:32899426
Matschiner M, Böhne A, Ronco F, Salzburger W. 2020. The genomic timeline of cichlid fish diversification across continents. Nat Commun 11: 5895.
doi: 10.1038/s41467-020-17827-9 PMID:33208747
Dvergedal H, Harvey TN, Jin Y, Ødegård J, Grønvold L, Sandve SR, Våge DI, Moen T, Klemetsdal G. 2020. Genomic regions and signaling pathways associated with indicator traits for feed efficiency in juvenile Atlantic salmon (Salmo salar). Genet Sel Evol 52: 66.
doi: 10.1186/s12711-020-00587-x PMID:33158415
Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Rayner S, Lie BA, Gilfillan GD. 2020. An extension to: Systematic assessment of commercially available low-input miRNA library preparation kits. RNA Biol 17: 1284-1292.
doi: 10.1080/15476286.2020.1761081 PMID:32436772
Helgeland H, Gabrielsen I, Akselsen H, Sundaram AYM, Flåm ST, Lie BA. 2020. Transcriptome profiling of human thymic CD4+ and CD8+ T cells compared to primary peripheral T cells. BMC Genomics 21: 350.
doi: 10.1186/s12864-020-6755-1 PMID:32393182
Vestrum RI, Attramadal KJK, Vadstein O, Gundersen MS, Bakke I. 2020. Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure. FEMS Microbiol Ecol 96.
doi: 10.1093/femsec/fiaa163 PMID:32816010
Brorson IS, Eriksson AM, Leikfoss IS, Vitelli V, Celius EG, Lüders T, Berge T, Harbo HF, Nilsen H, Bos SD. 2020. CD8+ T cell gene expression analysis identifies differentially expressed genes between multiple sclerosis patients and healthy controls. Mult Scler J Exp Transl Clin 6: 2055217320978511.
doi: 10.1177/2055217320978511 PMID:33343920
Saghaug CS, Klotz C, Kallio JP, Aebischer T, Langeland N, Hanevik K. 2020. Genetic Diversity of the Flavohemoprotein Gene of Giardia lamblia: Evidence for High Allelic Heterozygosity and Copy Number Variation. Infect Drug Resist 13: 4531-4545.
doi: 10.2147/IDR.S274543 PMID:33376360
Orr RJS, Sannum MM, Boessenkool S, Di Martino E, Gordon DP, Mello HL, Obst M, Ramsfjell MH, Smith AM, Liow LH. 2021. A molecular phylogeny of historical and contemporary specimens of an under-studied micro-invertebrate group. Ecol Evol 11: 309-320.
doi: 10.1002/ece3.7042 PMID:33437431
Jin X, Morro B, Tørresen OK, Moiche V, Solbakken MH, Jakobsen KS, Jentoft S, MacKenzie S. 2020. Innovation in Nucleotide-Binding Oligomerization-Like Receptor and Toll-Like Receptor Sensing Drives the Major Histocompatibility Complex-II Free Atlantic Cod Immune System. Front Immunol 11: 609456.
doi: 10.3389/fimmu.2020.609456 PMID:33362798
Martín-Durán JM, Vellutini BC, Marlétaz F, Cetrangolo V, Cvetesic N, Thiel D, Henriet S, Grau-Bové X, Carrillo-Baltodano AM, Gu W, Kerbl A, Marquez Y, Bekkouche N, Chourrout D, Gómez-Skarmeta JL, Irimia M, Lenhard B, Worsaae K, Hejnol A. 2021. Conservative route to genome compaction in a miniature annelid. Nat Ecol Evol 5: 231-242.
doi: 10.1038/s41559-020-01327-6 PMID:33199869
Sokolova M, Yang K, Hansen SH, Louwe MC, Kummen M, Hov JER, Sjaastad I, Berge RK, Halvorsen B, Aukrust P, Yndestad A, Ranheim T. 2020. NLRP3 inflammasome deficiency attenuates metabolic disturbances involving alterations in the gut microbial profile in mice exposed to high fat diet. Sci Rep 10: 21006.
doi: 10.1038/s41598-020-76497-1 PMID:33273482
Khan Y, Hammarström D, Rønnestad BR, Ellefsen S, Ahmad R. 2020. Increased biological relevance of transcriptome analyses in human skeletal muscle using a model-specific pipeline. BMC Bioinformatics 21: 548.
doi: 10.1186/s12859-020-03866-y PMID:33256614
Schure AT, Pillai AA, Thorbek L, Bhavani Shankar M, Puri R, Ravikanth G, Boer HJ, Boessenkool S. 2020. eDNA metabarcoding reveals dietary niche overlap among herbivores in an Indian wildlife sanctuary. Environmental DNA.
doi: 10.1002/edn3.168
Lillehammer M, Bangera R, Salazar M, Vela S, Erazo EC, Suarez A, Cock J, Rye M, Robinson NA. 2020. Genomic selection for white spot syndrome virus resistance in whiteleg shrimp boosts survival under an experimental challenge test. Sci Rep 10: 20571.
doi: 10.1038/s41598-020-77580-3 PMID:33239674
Ronco F, Matschiner M, Böhne A, Boila A, Büscher HH, El Taher A, Indermaur A, Malinsky M, Ricci V, Kahmen A, Jentoft S, Salzburger W. 2021. Drivers and dynamics of a massive adaptive radiation in cichlid fishes. Nature 589: 76-81.
doi: 10.1038/s41586-020-2930-4 PMID:33208944
Jin Y, Datsomor AK, Olsen RE, Vik JO, Torgersen JS, Edvardsen RB, Wargelius A, Winge P, Grammes F. 2020. Targeted mutagenesis of ∆5 and ∆6 fatty acyl desaturases induce dysregulation of lipid metabolism in Atlantic salmon (Salmo salar). BMC Genomics 21: 805.
doi: 10.1186/s12864-020-07218-1 PMID:33213387
Brown JJ, Rodríguez-Ruano SM, Poosakkannu A, Batani G, Schmidt JO, Roachell W, Zima J Jr, Hypša V, Nováková E. 2020. Ontogeny, species identity, and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae). Microbiome 8: 146.
doi: 10.1186/s40168-020-00921-x PMID:33040738
Smith NC, Christian SL, Woldemariam NT, Clow KA, Rise ML, Andreassen R. 2020. Characterization of miRNAs in Cultured Atlantic Salmon Head Kidney Monocyte-Like and Macrophage-Like Cells. Int J Mol Sci 21.
doi: 10.3390/ijms21113989 PMID:32498303
Becker NS, Rollins RE, Nosenko K, Paulus A, Martin S, Krebs S, Takano A, Sato K, Kovalev SY, Kawabata H, Fingerle V, Margos G. 2020. High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis. BMC Genomics 21: 702.
doi: 10.1186/s12864-020-07054-3 PMID:33032522
Woldemariam NT, Agafonov O, Sindre H, Høyheim B, Houston RD, Robledo D, Bron JE, Andreassen R. 2020. miRNAs Predicted to Regulate Host Anti-viral Gene Pathways in IPNV-Challenged Atlantic Salmon Fry Are Affected by Viral Load, and Associated With the Major IPN Resistance QTL Genotypes in Late Infection. Front Immunol 11: 2113.
doi: 10.3389/fimmu.2020.02113 PMID:33013890
Heggland EI, Dondrup M, Nilsen F, Eichner C. 2020. Host gill attachment causes blood-feeding by the salmon louse (Lepeophtheirus salmonis) chalimus larvae and alters parasite development and transcriptome. Parasit Vectors 13: 225.
doi: 10.1186/s13071-020-04096-0 PMID:32375890
Hillestad B, Makvandi-Nejad S, Krasnov A, Moghadam HK. 2020. Identification of genetic loci associated with higher resistance to pancreas disease (PD) in Atlantic salmon (Salmo salar L.). BMC Genomics 21: 388.
doi: 10.1186/s12864-020-06788-4 PMID:32493246
Roth O, Solbakken MH, Tørresen OK, Bayer T, Matschiner M, Baalsrud HT, Hoff SNK, Brieuc MSO, Haase D, Hanel R, Reusch TBH, Jentoft S. 2020. Evolution of male pregnancy associated with remodeling of canonical vertebrate immunity in seahorses and pipefishes. Proc Natl Acad Sci U S A 117: 9431-9439.
doi: 10.1073/pnas.1916251117 PMID:32284407
Tournière O, Dolan D, Richards GS, Sunagar K, Columbus-Shenkar YY, Moran Y, Rentzsch F. 2020. NvPOU4/Brain3 Functions as a Terminal Selector Gene in the Nervous System of the Cnidarian Nematostella vectensis. Cell Rep 30: 4473-4489.e5.
doi: 10.1016/j.celrep.2020.03.031 PMID:32234481
Rekeland IG, Fosså A, Lande A, Ktoridou-Valen I, Sørland K, Holsen M, Tronstad KJ, Risa K, Alme K, Viken MK, Lie BA, Dahl O, Mella O, Fluge Ø. 2020. Intravenous Cyclophosphamide in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. An Open-Label Phase II Study. Front Med (Lausanne) 7: 162.
doi: 10.3389/fmed.2020.00162 PMID:32411717
Lee S, Gulseth HL, Langleite TM, Norheim F, Olsen T, Refsum H, Jensen J, Birkeland KI, Drevon CA. 2020. Plasma Concentration of Branched Chain Amino Acids are Not Related to Improvements in Insulin Sensitivity after 12 W of Intensive Exercise in Sedentary Dysglycemic and Normoglycemic Men. SSRN Journal.
doi: 10.2139/ssrn.3542581
Bahram M, Netherway T, Hildebrand F, Pritsch K, Drenkhan R, Loit K, Anslan S, Bork P, Tedersoo L. 2020. Plant nutrient-acquisition strategies drive topsoil microbiome structure and function. New Phytol 227: 1189-1199.
doi: 10.1111/nph.16598 PMID:32279325
Tedersoo L, Anslan S, Bahram M, Drenkhan R, Pritsch K, Buegger F, Padari A, Hagh-Doust N, Mikryukov V, Gohar D, Amiri R, Hiiesalu I, Lutter R, Rosenvald R, Rähn E, Adamson K, Drenkhan T, Tullus H, Jürimaa K, Sibul I, Otsing E, Põlme S, Metslaid M, Loit K, Agan A, Puusepp R, Varik I, Kõljalg U, Abarenkov K. 2020. Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe. Front Microbiol 11: 1953.
doi: 10.3389/fmicb.2020.01953 PMID:33013735
Agan A, Drenkhan R, Adamson K, Tedersoo L, Solheim H, Børja I, Matsiakh I, Timmermann V, Nagy NE, Hietala AM. 2020. The Relationship between Fungal Diversity and Invasibility of a Foliar Niche-The Case of Ash Dieback. J Fungi (Basel) 6.
doi: 10.3390/jof6030150 PMID:32858843
Ritter CD, Dunthorn M, Anslan S, de Lima VX, Tedersoo L, Nilsson RH, Antonelli A. 2020. Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. Ecol Evol 10: 7509-7524.
doi: 10.1002/ece3.6477 PMID:32760545
Tedersoo L, Anslan S, Bahram M, Kõljalg U, Abarenkov K. 2020. Identifying the ‘unidentified’ fungi: a global-scale long-read third-generation sequencing approach. Fungal Diversity 103: 273-93.
doi: 10.1007/s13225-020-00456-4
Bertolotti AC, Layer RM, Gundappa MK, Gallagher MD, Pehlivanoglu E, Nome T, Robledo D, Kent MP, Røsæg LL, Holen MM, Mulugeta TD, Ashton TJ, Hindar K, Sægrov H, Florø-Larsen B, Erkinaro J, Primmer CR, Bernatchez L, Martin SAM, Johnston IA, Sandve SR, Lien S, Macqueen DJ. 2020. The structural variation landscape in 492 Atlantic salmon genomes. Nat Commun 11: 5176.
doi: 10.1038/s41467-020-18972-x PMID:33056985
Kjærner-Semb E, Edvardsen RB, Ayllon F, Vogelsang P, Furmanek T, Rubin CJ, Veselov AE, Nilsen TO, McCormick SD, Primmer CR, Wargelius A. 2021. Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere. Evol Appl 14: 446-461.
doi: 10.1111/eva.13129 PMID:33664787
Jueterbock A, Boström C, Coyer JA, Olsen JL, Kopp M, Dhanasiri AKS, Smolina I, Arnaud-Haond S, Van de Peer Y, Hoarau G. 2020. The Seagrass Methylome Is Associated With Variation in Photosynthetic Performance Among Clonal Shoots. Front Plant Sci 11: 571646.
doi: 10.3389/fpls.2020.571646 PMID:33013993
Iversen M, Mulugeta T, Gellein Blikeng B, West AC, Jørgensen EH, Rød Sandven S, Hazlerigg D. 2020. RNA profiling identifies novel, photoperiod-history dependent markers associated with enhanced saltwater performance in juvenile Atlantic salmon. PLoS One 15: e0227496.
doi: 10.1371/journal.pone.0227496 PMID:32267864
Epting D, Senaratne LDS, Ott E, Holmgren A, Sumathipala D, Larsen SM, Wallmeier J, Bracht D, Frikstad KM, Crowley S, Sikiric A, Barøy T, Käsmann-Kellner B, Decker E, Decker C, Bachmann N, Patzke S, Phelps IG, Katsanis N, Giles R, Schmidts M, Zucknick M, Lienkamp SS, Omran H, Davis EE, Doherty D, Strømme P, Frengen E, Bergmann C, Misceo D. 2020. Loss of CBY1 results in a ciliopathy characterized by features of Joubert syndrome. Hum Mutat 41: 2179-2194.
doi: 10.1002/humu.24127 PMID:33131181
Gulla S, Tengs T, Mohammad SN, Gjessing M, Garseth ÅH, Sveinsson K, Moldal T, Petersen PE, Tørud B, Dale OB, Dahle MK. 2020. Genotyping of Salmon Gill Poxvirus Reveals One Main Predominant Lineage in Europe, Featuring Fjord- and Fish Farm-Specific Sub-Lineages. Front Microbiol 11: 1071.
doi: 10.3389/fmicb.2020.01071 PMID:32547516
Jansson E, Besnier F, Malde K, André C, Dahle G, Glover KA. 2020. Genome wide analysis reveals genetic divergence between Goldsinny wrasse populations. BMC Genet 21: 118.
doi: 10.1186/s12863-020-00921-8 PMID:33036553
West AC, Iversen M, Jørgensen EH, Sandve SR, Hazlerigg DG, Wood SH. 2020. Diversified regulation of circadian clock gene expression following whole genome duplication. PLoS Genet 16: e1009097.
doi: 10.1371/journal.pgen.1009097 PMID:33031398
Navada S, Sebastianpillai M, Kolarevic J, Fossmark RO, Tveten AK, Gaumet F, Mikkelsen Ø, Vadstein O. 2020. A salty start: Brackish water start-up as a microbial management strategy for nitrifying bioreactors with variable salinity. Sci Total Environ 739: 139934.
doi: 10.1016/j.scitotenv.2020.139934 PMID:32534315
Konstantinidis I, Sætrom P, Mjelle R, Nedoluzhko AV, Robledo D, Fernandes JMO. 2020. Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication. Epigenetics 15: 1052-1067.
doi: 10.1080/15592294.2020.1748914 PMID:32264748
Samuelsen Ø, Åstrand OAH, Fröhlich C, Heikal A, Skagseth S, Carlsen TJO, Leiros HS, Bayer A, Schnaars C, Kildahl-Andersen G, Lauksund S, Finke S, Huber S, Gjøen T, Andresen AMS, Økstad OA, Rongved P. 2020. ZN148 Is a Modular Synthetic Metallo-β-Lactamase Inhibitor That Reverses Carbapenem Resistance in Gram-Negative Pathogens In Vivo. Antimicrob Agents Chemother 64.
doi: 10.1128/AAC.02415-19 PMID:32179522
Riiser ES, Haverkamp THA, Varadharajan S, Borgan Ø, Jakobsen KS, Jentoft S, Star B. 2020. Metagenomic Shotgun Analyses Reveal Complex Patterns of Intra- and Interspecific Variation in the Intestinal Microbiomes of Codfishes. Appl Environ Microbiol 86.
doi: 10.1128/AEM.02788-19 PMID:31953333
Umu SU, Langseth H, Keller A, Meese E, Helland Å, Lyle R, Rounge TB. 2020. A 10-year prediagnostic follow-up study shows that serum RNA signals are highly dynamic in lung carcinogenesis. Mol Oncol 14: 235-247.
doi: 10.1002/1878-0261.12620 PMID:31851411
Bøifot KO, Gohli J, Moen LV, Dybwad M. 2020. Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research. Environmental Microbiome 15.
doi: 10.1186/s40793-019-0349-z
Jin Y, Olsen RE, Harvey TN, Østensen MA, Li K, Santi N, Vadstein O, Bones AM, Vik JO, Sandve SR, Olsen Y. 2020. Comparative transcriptomics reveals domestication-associated features of Atlantic salmon lipid metabolism. Mol Ecol 29: 1860-1872.
doi: 10.1111/mec.15446 PMID:32293070
Kaspersen H, Sekse C, Zeyl Fiskebeck E, Slettemeås JS, Simm R, Norström M, Urdahl AM, Lagesen K. 2020. Dissemination of Quinolone-Resistant Escherichia coli in the Norwegian Broiler and Pig Production Chains and Possible Persistence in the Broiler Production Environment. Appl Environ Microbiol 86.
doi: 10.1128/AEM.02769-19 PMID:31953334
Kaspersen H, Fiskebeck EZ, Sekse C, Slettemeås JS, Urdahl AM, Norström M, Lagesen K, Simm R. 2020. Comparative Genome Analyses of Wild Type- and Quinolone Resistant Escherichia coli Indicate Dissemination of QREC in the Norwegian Broiler Breeding Pyramid. Front Microbiol 11: 938.
doi: 10.3389/fmicb.2020.00938 PMID:32508776
Mageroy MH, Wilkinson SW, Tengs T, Cross H, Almvik M, Pétriacq P, Vivian-Smith A, Zhao T, Fossdal CG, Krokene P. 2020. Molecular underpinnings of methyl jasmonate-induced resistance in Norway spruce. Plant Cell Environ 43: 1827-1843.
doi: 10.1111/pce.13774 PMID:32323322
Lee S, Gulseth HL, Langleite TM, Norheim F, Olsen T, Refsum H, Jensen J, Birkeland KI, Drevon CA. 2021. Branched-chain amino acid metabolism, insulin sensitivity and liver fat response to exercise training in sedentary dysglycaemic and normoglycaemic men. Diabetologia 64: 410-423.
doi: 10.1007/s00125-020-05296-0 PMID:33123769
Guellil M, Kersten O, Namouchi A, Luciani S, Marota I, Arcini CA, Iregren E, Lindemann RA, Warfvinge G, Bakanidze L, Bitadze L, Rubini M, Zaio P, Zaio M, Neri D, Stenseth NC, Bramanti B. 2020. A genomic and historical synthesis of plague in 18th century Eurasia. Proc Natl Acad Sci U S A 117: 28328-28335.
doi: 10.1073/pnas.2009677117 PMID:33106412
Brunetti M, Zeller B, Tierens A, Heim S, Micci F, Panagopoulos I. 2020. TYRO3 Truncation Resulting From a t(10;15)(p11;q15) Chromosomal Translocation in Pediatric Acute Myeloid Leukemia. Anticancer Res 40: 6115-6121.
doi: 10.21873/anticanres.14632 PMID:33109549
Pain M, Wolden R, Jaén-Luchoro D, Salvà-Serra F, Iglesias BP, Karlsson R, Klingenberg C, Cavanagh JP. 2020. Staphylococcus borealis sp. nov., isolated from human skin and blood. Int J Syst Evol Microbiol 70: 6067-6078.
doi: 10.1099/ijsem.0.004499 PMID:33048039
Guslund NC, Solbakken MH, Brieuc MSO, Jentoft S, Jakobsen KS, Qiao SW. 2020. Single-Cell Transcriptome Profiling of Immune Cell Repertoire of the Atlantic Cod Which Naturally Lacks the Major Histocompatibility Class II System. Front Immunol 11: 559555.
doi: 10.3389/fimmu.2020.559555 PMID:33154745
Eieland AK, Normann KR, Sundaram AYM, Nyman TA, Øystese KAB, Lekva T, Berg JP, Bollerslev J, Olarescu NC. 2020. Distinct Pattern of Endoplasmic Reticulum Protein Processing and Extracellular Matrix Proteins in Functioning and Silent Corticotroph Pituitary Adenomas. Cancers (Basel) 12.
doi: 10.3390/cancers12102980 PMID:33066652
Nowak MD, Birkeland S, Mandáková T, Roy Choudhury R, Guo X, Gustafsson ALS, Gizaw A, Schrøder-Nielsen A, Fracassetti M, Brysting AK, Rieseberg L, Slotte T, Parisod C, Lysak MA, Brochmann C. 2021. The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic. Mol Ecol Resour 21: 661-676.
doi: 10.1111/1755-0998.13280 PMID:33058468
Hess J, Balasundaram SV, Bakkemo RI, Drula E, Henrissat B, Högberg N, Eastwood D, Skrede I. 2021. Niche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans. ISME J 15: 592-604.
doi: 10.1038/s41396-020-00799-5 PMID:33077886
Valestrand L, Berntsen NL, Zheng F, Schrumpf E, Hansen SH, Karlsen TH, Blumberg RS, Hov JR, Jiang X, Melum E. 2021. Lipid antigens in bile from patients with chronic liver diseases activate natural killer T cells. Clin Exp Immunol 203: 304-314.
doi: 10.1111/cei.13541 PMID:33089489
Nyerges A, Tomašič T, Durcik M, Revesz T, Szili P, Draskovits G, Bogar F, Skok Ž, Zidar N, Ilaš J, Zega A, Kikelj D, Daruka L, Kintses B, Vasarhelyi B, Foldesi I, Kata D, Welin M, Kimbung R, Focht D, Mašič LP, Pal C. 2020. Rational design of balanced dual-targeting antibiotics with limited resistance. PLoS Biol 18: e3000819.
doi: 10.1371/journal.pbio.3000819 PMID:33017402
Delogu F, Kunath BJ, Evans PN, Arntzen MØ, Hvidsten TR, Pope PB. 2020. Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes. Nat Commun 11: 4708.
doi: 10.1038/s41467-020-18543-0 PMID:32948758
Shwe A, Østbye TK, Krasnov A, Ramberg S, Andreassen R. 2020. Characterization of Differentially Expressed miRNAs and Their Predicted Target Transcripts during Smoltification and Adaptation to Seawater in Head Kidney of Atlantic Salmon. Genes (Basel) 11.
doi: 10.3390/genes11091059 PMID:32911670
Thibau A, Schultze TG, Ballhorn W, Kempf VAJ. 2020. Complete Genome Sequence of Bartonella alsatica Strain IBS 382 (CIP 105477). Microbiol Resour Announc 9.
doi: 10.1128/MRA.00769-20 PMID:32816983
Håkenåsen IM, Øverland M, Ånestad R, Åkesson CP, Sundaram AY, Press CM, Mydland LT. 2020. Gene expression and gastrointestinal function is altered in piglet small intestine by weaning and inclusion of Cyberlindnera jadinii yeast as a protein source. Journal of Functional Foods 73: 104118.
doi: 10.1016/j.jff.2020.104118
Sumathipala D, Strømme P, Gilissen C, Einarsen IH, Bjørndalen HJ, Server A, Corominas J, Hassel B, Fannemel M, Misceo D, Frengen E. 2020. Sudden death in epilepsy and ectopic neurohypophysis in Joubert syndrome 23 diagnosed using SNVs/indels and structural variants pipelines on WGS data: a case report. BMC Med Genet 21: 96.
doi: 10.1186/s12881-020-01024-y PMID:32381069
Sumathipala DS, Misceo D, Larsen SM, Barøy T, Gamage TH, Frengen E, Strømme P. 2020. A girl with a neurodevelopmental syndrome, adducted thumbs and frequent infections caused by novel homozygous variant in DEAF1. Clin Dysmorphol 29: 107-110.
doi: 10.1097/MCD.0000000000000314 PMID:31929336
Chen CA, Crutcher E, Gill H, Nelson TN, Robak LA, Jongmans MCJ, Pfundt R, Prasad C, Berard RA, Fannemel M, Frengen E, Misceo D, Ramsey K, Yang Y, Schaaf CP, Wang X. 2020. The expanding clinical phenotype of germline ABL1-associated congenital heart defects and skeletal malformations syndrome. Hum Mutat 41: 1738-1744.
doi: 10.1002/humu.24075 PMID:32643838
Bøifot KO, Gohli J, Skogan G, Dybwad M. 2020. Performance evaluation of high-volume electret filter air samplers in aerosol microbiome research. Environ Microbiome 15: 14.
doi: 10.1186/s40793-020-00362-x PMID:33902714
Storesund JE, Lanzèn A, Nordmann EL, Armo HR, Lage OM, Øvreås L. 2020. Planctomycetes as a Vital Constituent of the Microbial Communities Inhabiting Different Layers of the Meromictic Lake Sælenvannet (Norway). Microorganisms 8: 1150.
doi: 10.3390/microorganisms8081150
Yakovlev IA, Lysøe E, Heldal I, Steen H, Hagen SB, Clarke JL. 2020. Transcriptome profiling and in silico detection of the antimicrobial peptides of red king crab Paralithodes camtschaticus. Sci Rep 10: 12679.
doi: 10.1038/s41598-020-69126-4 PMID:32728087
Tsakogiannis A, Manousaki T, Anagnostopoulou V, Stavroulaki M, Apostolaki ET. 2020. The Importance of Genomics for Deciphering the Invasion Success of the Seagrass Halophila stipulacea in the Changing Mediterranean Sea. Diversity 12: 263.
doi: 10.3390/d12070263
Duru IC, Andreevskaya M, Laine P, Rode TM, Ylinen A, Løvdal T, Bar N, Crauwels P, Riedel CU, Bucur FI, Nicolau AI, Auvinen P. 2020. Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing. BMC Genomics 21: 455.
doi: 10.1186/s12864-020-06819-0 PMID:32615922
Agusti-Ridaura C, Bakke MJ, Helgesen KO, Sundaram AYM, Bakke SJ, Kaur K, Horsberg TE. 2020. Candidate genes for monitoring hydrogen peroxide resistance in the salmon louse, Lepeophtheirus salmonis. Parasit Vectors 13: 344.
doi: 10.1186/s13071-020-04211-1 PMID:32650825
Aslam ML, Robledo D, Krasnov A, Moghadam HK, Hillestad B, Houston RD, Baranski M, Boison S, Robinson NA. 2020. Quantitative trait loci and genes associated with salmonid alphavirus load in Atlantic salmon: implications for pancreas disease resistance and tolerance. Sci Rep 10: 10393.
doi: 10.1038/s41598-020-67405-8 PMID:32587341
Maršíková J, Pavlíčková M, Wilkinson D, Váchová L, Hlaváček O, Hatáková L, Palková Z. 2020. The Whi2p-Psr1p/Psr2p complex regulates interference competition and expansion of cells with competitive advantage in yeast colonies. Proc Natl Acad Sci U S A 117: 15123-15131.
doi: 10.1073/pnas.1922076117 PMID:32541056
Gama JA, Kloos J, Johnsen PJ, Samuelsen Ø. 2020. Host dependent maintenance of a blaNDM-1-encoding plasmid in clinical Escherichia coli isolates. Sci Rep 10: 9332.
doi: 10.1038/s41598-020-66239-8 PMID:32518312
Cayuela H, Rougemont Q, Laporte M, Mérot C, Normandeau E, Dorant Y, Tørresen OK, Hoff SNK, Jentoft S, Sirois P, Castonguay M, Jansen T, Praebel K, Clément M, Bernatchez L. 2020. Shared ancestral polymorphisms and chromosomal rearrangements as potential drivers of local adaptation in a marine fish. Mol Ecol 29: 2379-2398.
doi: 10.1111/mec.15499 PMID:32497342
van Son M, Tremoen NH, Gaustad AH, Våge DI, Zeremichael TT, Myromslien FD, Grindflek E. 2020. Transcriptome profiling of porcine testis tissue reveals genes related to sperm hyperactive motility. BMC Vet Res 16: 161.
doi: 10.1186/s12917-020-02373-9 PMID:32456687
Fretheim H, Chung BK, Didriksen H, Bækkevold ES, Midtvedt Ø, Brunborg C, Holm K, Valeur J, Tennøe AH, Garen T, Midtvedt T, Trøseid M, Zarè H, Lund MB, Hov JR, Lundin KEA, Molberg Ø, Hoffmann-Vold AM. 2020. Fecal microbiota transplantation in systemic sclerosis: A double-blind, placebo-controlled randomized pilot trial. PLoS One 15: e0232739.
doi: 10.1371/journal.pone.0232739 PMID:32437393
Fagerlund A, Langsrud S, Møretrø T. 2020. In-Depth Longitudinal Study of Listeria monocytogenes ST9 Isolates from the Meat Processing Industry: Resolving Diversity and Transmission Patterns Using Whole-Genome Sequencing. Appl Environ Microbiol 86.
doi: 10.1128/AEM.00579-20 PMID:32414794
Eggestøl HØ, Lunde HS, Knutsen TM, Haugland GT. 2020. Interleukin-1 Ligands and Receptors in Lumpfish (Cyclopterus lumpus L.): Molecular Characterization, Phylogeny, Gene Expression, and Transcriptome Analyses. Front Immunol 11: 502.
doi: 10.3389/fimmu.2020.00502 PMID:32300342
Taxt AM, Avershina E, Frye SA, Naseer U, Ahmad R. 2020. Rapid identification of pathogens, antibiotic resistance genes and plasmids in blood cultures by nanopore sequencing. Sci Rep 10: 7622.
doi: 10.1038/s41598-020-64616-x PMID:32376847
Fossmark RO, Vadstein O, Rosten TW, Bakke I, Košeto D, Bugten AV, Helberg GA, Nesje J, Jørgensen NO, Raspati G, Azrague K, Østerhus SW, Attramadal KJ. 2020. Effects of reduced organic matter loading through membrane filtration on the microbial community dynamics in recirculating aquaculture systems (RAS) with Atlantic salmon parr (Salmo salar). Aquaculture 524: 735268.
doi: 10.1016/j.aquaculture.2020.735268
Kummen M, Solberg OG, Storm-Larsen C, Holm K, Ragnarsson A, Trøseid M, Vestad B, Skårdal R, Yndestad A, Ueland T, Svardal A, Berge RK, Seljeflot I, Gullestad L, Karlsen TH, Aaberge L, Aukrust P, Hov JR. 2020. Rosuvastatin alters the genetic composition of the human gut microbiome. Sci Rep 10: 5397.
doi: 10.1038/s41598-020-62261-y PMID:32214138
Lande A, Fluge Ø, Strand EB, Flåm ST, Sosa DD, Mella O, Egeland T, Saugstad OD, Lie BA, Viken MK. 2020. Human Leukocyte Antigen alleles associated with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS). Sci Rep 10: 5267.
doi: 10.1038/s41598-020-62157-x PMID:32210306
Giess A, Torres Cleuren YN, Tjeldnes H, Krause M, Bizuayehu TT, Hiensch S, Okon A, Wagner CR, Valen E. 2020. Profiling of Small Ribosomal Subunits Reveals Modes and Regulation of Translation Initiation. Cell Rep 31: 107534.
doi: 10.1016/j.celrep.2020.107534 PMID:32320657
Navada S, Knutsen MF, Bakke I, Vadstein O. 2020. Nitrifying biofilms deprived of organic carbon show higher functional resilience to increases in carbon supply. Sci Rep 10: 7121.
doi: 10.1038/s41598-020-64027-y PMID:32346018
Andresen AMS, Boudinot P, Gjøen T. 2020. Kinetics of transcriptional response against poly (I:C) and infectious salmon anemia virus (ISAV) in Atlantic salmon kidney (ASK) cell line. Dev Comp Immunol.
doi: 10.1016/j.dci.2020.103716 PMID:32360383
Lofthus S, Bakke I, Tremblay J, Greer CW, Brakstad OG. 2020. Biodegradation of weathered crude oil in seawater with frazil ice. Mar Pollut Bull 154: 111090.
doi: 10.1016/j.marpolbul.2020.111090 PMID:32319919
Goswami C, Fox S, Holden MTG, Connor M, Leanord A, Evans TJ. 2020. Origin, maintenance and spread of antibiotic resistance genes within plasmids and chromosomes of bloodstream isolates of Escherichia coli. Microb Genom 6.
doi: 10.1099/mgen.0.000353 PMID:32160146
Mo SS, Telke AA, Osei KO, Sekse C, Slettemeås JS, Urdahl AM, Ilag HK, Leangapichart T, Sunde M. 2020. bla CTX-M- 1/IncI1-Iγ Plasmids Circulating in Escherichia coli From Norwegian Broiler Production Are Related, but Distinguishable. Front Microbiol 11: 333.
doi: 10.3389/fmicb.2020.00333 PMID:32194533
Stenmark B, Harrison OB, Eriksson L, Anton BP, Fomenkov A, Roberts RJ, Tooming-Klunderud A, Bratcher HB, Bray JE, Thulin-Hedberg S, Maiden MCJ, Mölling P. 2020. Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease. Sci Rep 10: 3644.
doi: 10.1038/s41598-020-59509-y PMID:32108139
Su H, Zhang X, He Y, Li L, Wang Y, Hong G, Xu P. 2020. Transcriptomic Analysis Reveals the Molecular Adaptation of Three Major Secondary Metabolic Pathways to Multiple Macronutrient Starvation in Tea (Camellia sinensis). Genes (Basel) 11.
doi: 10.3390/genes11030241 PMID:32106614
Løvmo SD, Madaro A, Whatmore P, Bardal T, Ostensen MA, Sandve SR, Olsen RE. 2020. Mid and hindgut transcriptome profiling analysis of Atlantic salmon (Salmon salar) under unpredictable chronic stress. R Soc Open Sci 7: 191480.
doi: 10.1098/rsos.191480 PMID:32257316
Akkouh IA, Ueland T, Hansson L, Inderhaug E, Hughes T, Steen NE, Aukrust P, Andreassen OA, Szabo A, Djurovic S. 2020. Decreased IL-1β-induced CCL20 response in human iPSC-astrocytes in schizophrenia: Potential attenuating effects on recruitment of regulatory T cells. Brain Behav Immun 87: 634-644.
doi: 10.1016/j.bbi.2020.02.008 PMID:32109548
Robinson NA, Krasnov A, Burgerhout E, Johnsen H, Moghadam HK, Hillestad B, Aslam ML, Baranski M, Boison SA. 2020. Response of the Salmon Heart Transcriptome to Pancreas Disease: Differences Between High- and Low-Ranking Families for Resistance. Sci Rep 10: 868.
doi: 10.1038/s41598-020-57786-1 PMID:31964968
Mayerhofer CCK, Kummen M, Holm K, Broch K, Awoyemi A, Vestad B, Storm-Larsen C, Seljeflot I, Ueland T, Bohov P, Berge RK, Svardal A, Gullestad L, Yndestad A, Aukrust P, Hov JR, Trøseid M. 2020. Low fibre intake is associated with gut microbiota alterations in chronic heart failure. ESC Heart Fail.
doi: 10.1002/ehf2.12596 PMID:31978943
Fedorov VB, Trucchi E, Goropashnaya AV, Waltari E, Whidden SE, Stenseth NC. 2020. Impact of past climate warming on genomic diversity and demographic history of collared lemmings across the Eurasian Arctic. Proc Natl Acad Sci U S A.
doi: 10.1073/pnas.1913596117 PMID:31988125
Nilsson P, Solbakken MH, Schmid BV, Orr RJS, Lv R, Cui Y, Song Y, Zhang Y, Baalsrud HT, Tørresen OK, Stenseth NC, Yang R, Jakobsen KS, Easterday WR, Jentoft S. 2020. The genome of the great gerbil reveals species-specific duplication of an MHCII gene. Genome Biol Evol.
doi: 10.1093/gbe/evaa008 PMID:31971556
Ting YT, Dahal-Koirala S, Kim HSK, Qiao SW, Neumann RS, Lundin KEA, Petersen J, Reid HH, Sollid LM, Rossjohn J. 2020. A molecular basis for the T cell response in HLA-DQ2.2 mediated celiac disease. Proc Natl Acad Sci U S A.
doi: 10.1073/pnas.1914308117 PMID:31974305
Stüken A, Haverkamp THA. 2020. Metagenomic Sequences of Three Drinking Water and Two Shower Hose Biofilm Samples Treated with or without Copper-Silver Ionization. Microbiol Resour Announc 9.
doi: 10.1128/MRA.01220-19 PMID:31948958
Nousias O, Tsakogiannis A, Duncan N, Villa J, Tzokas K, Estevez A, Chatziplis D, Tsigenopoulos CS. 2020. Parentage assignment, estimates of heritability and genetic correlation for growth-related traits in meagre Argyrosomus regius. Aquaculture 518: 734663.
doi: 10.1016/j.aquaculture.2019.734663
Koutsouveli V, Manousaki T, Riesgo A, Lagnel J, Kollias S, Tsigenopoulos CS, Arvanitidis C, Dounas C, Magoulas A, Dailianis T. 2020. Gearing Up for Warmer Times: Transcriptomic Response of Spongia officinalis to Elevated Temperatures Reveals Recruited Mechanisms and Potential for Resilience. Front Mar Sci 6.
doi: 10.3389/fmars.2019.00786
Kuleshov KV, Margos G, Fingerle V, Koetsveld J, Goptar IA, Markelov ML, Kolyasnikova NM, Sarksyan DS, Kirdyashkina NP, Shipulin GA, Hovius JW, Platonov AE. 2020. Whole genome sequencing of Borrelia miyamotoi isolate Izh-4: reference for a complex bacterial genome. BMC Genomics 21: 16.
doi: 10.1186/s12864-019-6388-4 PMID:31906865
Barrett JH, Boessenkool S, Kneale CJ, O’Connell TC, Star B. 2020. Ecological globalisation, serial depletion and the medieval trade of walrus rostra. Quaternary Science Reviews 229: 106122.
doi: 10.1016/j.quascirev.2019.106122
Dichter AA, Schultze TG, Becker SA, Tsukayama P, Kempf VAJ. 2020. Complete Genome Sequence of Bartonella bacilliformis Strain KC584 (ATCC 35686). Microbiol Resour Announc 9.
doi: 10.1128/MRA.01377-19 PMID:31896649
Gelpi M, Vestad B, Hansen SH, Holm K, Drivsholm N, Goetz A, Kirkby NS, Lindegaard B, Lebech AM, Hoel H, Michelsen AE, Ueland T, Gerstoft J, Lundgren J, Hov JR, Nielsen SD, Trøseid M. 2020. Impact of Hiv-Related Gut Microbiota Alterations on Metabolic Comorbidities. Clin Infect Dis.
doi: 10.1093/cid/ciz1235 PMID:31894240
du Pré MF, Blazevski J, Dewan AE, Stamnaes J, Kanduri C, Sandve GK, Johannesen MK, Lindstad CB, Hnida K, Fugger L, Melino G, Qiao SW, Sollid LM. 2020. B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2. J Exp Med 217.
doi: 10.1084/jem.20190860 PMID:31727780
Dilip Chand Raja S, Rajasekaran S. 2020. Letter to the Editor concerning "Bacteria: back pain, leg pain and Modic sign-a surgical multicentre comparative study" by Fritzell P, et al. (Eur Spine J [2019]; doi:10.1007/s00586-019-06164-1). Eur Spine J.
doi: 10.1007/s00586-020-06318-6 PMID:32008101
2019
Fredriksen L, Stokke R, Jensen MS, Westereng B, Jameson JK, Steen IH, Eijsink VGH. 2019. Discovery of a Thermostable GH10 Xylanase with Broad Substrate Specificity from the Arctic Mid-Ocean Ridge Vent System. Appl Environ Microbiol 85.
doi: 10.1128/AEM.02970-18 PMID:30635385
Coucheron DH, Wojewodzic MW, Bøhn T. 2019. MicroRNAs in Daphnia magna identified and characterized by deep sequencing, genome mapping and manual curation. Sci Rep 9: 15945.
doi: 10.1038/s41598-019-52387-z PMID:31685896
Khider M, Hansen H, Hjerde E, Johansen JA, Willassen NP. 2019. Exploring the transcriptome of luxI- and ΔainS mutants and the impact of N-3-oxo-hexanoyl-L- and N-3-hydroxy-decanoyl-L-homoserine lactones on biofilm formation in Aliivibrio salmonicida. PeerJ 7: e6845.
doi: 10.7717/peerj.6845 PMID:31106062
Maremonti E, Eide DM, Oughton DH, Salbu B, Grammes F, Kassaye YA, Guédon R, Lecomte-Pradines C, Brede DA. 2019. Gamma radiation induces life stage-dependent reprotoxicity in Caenorhabditis elegans via impairment of spermatogenesis. Sci Total Environ 695: 133835.
doi: 10.1016/j.scitotenv.2019.133835 PMID:31425988
Le HT, Shao X, Krogdahl Å, Kortner TM, Lein I, Kousoulaki K, Lie KK, Sæle Ø. 2019. Intestinal Function of the Stomachless Fish, Ballan Wrasse (Labrus bergylta). Front Mar Sci 6.
doi: 10.3389/fmars.2019.00140
Vimberg V, Zieglerova L, Závora J, Šemberová L, Prásilová J, Adámková V, Novotna GB. 2019. Draft genome sequences of three clinical isolates of teicoplanin-resistant Staphylococcus epidermidis from patients without prior exposure to glycopeptide antibiotics. J Glob Antimicrob Resist 16: 251-253.
doi: 10.1016/j.jgar.2019.02.005 PMID:30797086
Langlete P, Krabberød AK, Winther-Larsen HC. 2019. Vesicles From Vibrio cholerae Contain AT-Rich DNA and Shorter mRNAs That Do Not Correlate With Their Protein Products. Front Microbiol 10: 2708.
doi: 10.3389/fmicb.2019.02708 PMID:31824470
Cristofari R, Plaza P, Fernández CE, Trucchi E, Gouin N, Le Bohec C, Zavalaga C, Alfaro-Shigueto J, Luna-Jorquera G. 2019. Unexpected population fragmentation in an endangered seabird: the case of the Peruvian diving-petrel. Sci Rep 9: 2021.
doi: 10.1038/s41598-019-38682-9 PMID:30765805
Boison SA, Gjerde B, Hillestad B, Makvandi-Nejad S, Moghadam HK. 2019. Genomic and Transcriptomic Analysis of Amoebic Gill Disease Resistance in Atlantic Salmon (Salmo salar L.). Front Genet 10: 68.
doi: 10.3389/fgene.2019.00068 PMID:30873203
Horn SS, Sonesson AK, Krasnov A, Moghadam H, Hillestad B, Meuwissen THE, Ruyter B. 2019. Individual differences in EPA and DHA content of Atlantic salmon are associated with gene expression of key metabolic processes. Sci Rep 9: 3889.
doi: 10.1038/s41598-019-40391-2 PMID:30846825
Margaryan A, Panosyan H, Mamimin C, Trchounian A, Birkeland NK. 2019. Insights into the Bacterial Diversity of the Acidic Akhtala Mine Tailing in Armenia Using Molecular Approaches. Curr Microbiol 76: 462-469.
doi: 10.1007/s00284-019-01640-9 PMID:30778659
Lie KK, Meier S, Sørhus E, Edvardsen RB, Karlsen Ø, Olsvik PA. 2019. Offshore Crude Oil Disrupts Retinoid Signaling and Eye Development in Larval Atlantic Haddock. Front Mar Sci 6.
doi: 10.3389/fmars.2019.00368
Khider M, Hjerde E, Hansen H, Willassen NP. 2019. Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicida. BMC Genomics 20: 220.
doi: 10.1186/s12864-019-5594-4 PMID:30876404
Maremonti E, Eide DM, Rossbach LM, Lind OC, Salbu B, Brede DA. 2020. In vivo assessment of reactive oxygen species production and oxidative stress effects induced by chronic exposure to gamma radiation in Caenorhabditis elegans. Free Radic Biol Med 152: 583-596.
doi: 10.1016/j.freeradbiomed.2019.11.037 PMID:31805397
Jalili M, Jin Y, Bones AM, Olsen Y, Vadstein O, Østensen MA, Buonocore F, Gerdol M, Pallavicini A, Scapigliati G. 2019. Dietary fatty acid source has little effect on the development of the immune system in the pyloric caeca of Atlantic salmon fry. Sci Rep 9: 27.
doi: 10.1038/s41598-018-37266-3 PMID:30631091
Pain M, Hjerde E, Klingenberg C, Cavanagh JP. 2019. Comparative Genomic Analysis of Staphylococcus haemolyticus Reveals Key to Hospital Adaptation and Pathogenicity. Front Microbiol 10: 2096.
doi: 10.3389/fmicb.2019.02096 PMID:31552006
Ikram S, Heikal A, Finke S, Hofgaard A, Rehman Y, Sabri AN, Økstad OA. 2019. Bacillus cereus biofilm formation on central venous catheters of hospitalised cardiac patients. Biofouling 35: 204-216.
doi: 10.1080/08927014.2019.1586889 PMID:30950292
Lewandowska-Sabat AM, Kirsanova E, Klopp C, Solberg TR, Heringstad B, Østerås O, Boysen P, Olsaker I. 2019. Transcription Profiling of Monocyte-Derived Macrophages Infected In Vitro With Two Strains of Streptococcus agalactiae Reveals Candidate Pathways Affecting Subclinical Mastitis in Cattle. Front Genet 10: 689.
doi: 10.3389/fgene.2019.00689 PMID:31417606
Christophersen A, Lund EG, Snir O, Solà E, Kanduri C, Dahal-Koirala S, Zühlke S, Molberg Ø, Utz PJ, Rohani-Pichavant M, Simard JF, Dekker CL, Lundin KEA, Sollid LM, Davis MM. 2019. Distinct phenotype of CD4+ T cells driving celiac disease identified in multiple autoimmune conditions. Nat Med 25: 734-737.
doi: 10.1038/s41591-019-0403-9 PMID:30911136
Cernilogar FM, Hasenöder S, Wang Z, Scheibner K, Burtscher I, Sterr M, Smialowski P, Groh S, Evenroed IM, Gilfillan GD, Lickert H, Schotta G. 2019. Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2. Nucleic Acids Res 47: 9069-9086.
doi: 10.1093/nar/gkz627 PMID:31350899
Hueso-Gil A, Nyerges Á, Pál C, Calles B, de Lorenzo V. 2020. Multiple-Site Diversification of Regulatory Sequences Enables Interspecies Operability of Genetic Devices. ACS Synth Biol 9: 104-114.
doi: 10.1021/acssynbio.9b00375 PMID:31794196
Loit K, Adamson K, Bahram M, Puusepp R, Anslan S, Kiiker R, Drenkhan R, Tedersoo L. 2019. Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens. Appl Environ Microbiol 85.
doi: 10.1128/AEM.01368-19 PMID:31444199
De Schepper S, Ray JL, Skaar KS, Sadatzki H, Ijaz UZ, Stein R, Larsen A. 2019. The potential of sedimentary ancient DNA for reconstructing past sea ice evolution. ISME J 13: 2566-2577.
doi: 10.1038/s41396-019-0457-1 PMID:31235841
Le Moine Bauer S, Sjøberg AG, L'Haridon S, Stokke R, Roalkvam I, Steen IH, Dahle H. 2019. Profundibacter amoris gen. nov., sp. nov., a new member of the Roseobacter clade isolated from Loki's Castle Vent Field on the Arctic Mid-Ocean Ridge. Int J Syst Evol Microbiol 69: 975-981.
doi: 10.1099/ijsem.0.003234 PMID:30758283
Sturød K, Dhariwal A, Dahle UR, Vestrheim DF, Petersen FC. 2019. Impact of narrow-spectrum penicillin V on the oral and faecal resistome in a young child treated for otitis media. J Glob Antimicrob Resist 20: 290-297.
doi: 10.1016/j.jgar.2019.08.004 PMID:31415828
Tedersoo L, Anslan S. 2019. Towards PacBio-based pan-eukaryote metabarcoding using full-length ITS sequences. Environ Microbiol Rep 11: 659-668.
doi: 10.1111/1758-2229.12776 PMID:31219680
Zhong X, Heinicke F, Lie BA, Rayner S. 2019. Accurate Adapter Information Is Crucial for Reproducibility and Reusability in Small RNA Seq Studies. Noncoding RNA 5.
doi: 10.3390/ncrna5040049 PMID:31661777
Musilova Z, Cortesi F, Matschiner M, Davies WIL, Patel JS, Stieb SM, de Busserolles F, Malmstrøm M, Tørresen OK, Brown CJ, Mountford JK, Hanel R, Stenkamp DL, Jakobsen KS, Carleton KL, Jentoft S, Marshall J, Salzburger W. 2019. Vision using multiple distinct rod opsins in deep-sea fishes. Science 364: 588-592.
doi: 10.1126/science.aav4632 PMID:31073066
Bjerkan KN, Hornslien KS, Johannessen IM, Krabberød AK, van Ekelenburg YS, Kalantarian M, Shirzadi R, Comai L, Brysting AK, Bramsiepe J, Grini PE. 2020. Genetic variation and temperature affects hybrid barriers during interspecific hybridization. Plant J 101: 122-140.
doi: 10.1111/tpj.14523 PMID:31487093
Iqbal Z, Koht J, Pihlstrøm L, Henriksen SP, Cappelletti C, Russel MB, Norberto de Souza O, Skogseid IM, Toft M. 2019. Missense mutations in DYT-TOR1A dystonia. Neurol Genet 5: e343.
doi: 10.1212/NXG.0000000000000343 PMID:31321303
Tsakogiannis A, Manousaki T, Lagnel J, Papanikolaou N, Papandroulakis N, Mylonas CC, Tsigenopoulos CS. 2018. The Gene Toolkit Implicated in Functional Sex in Sparidae Hermaphrodites: Inferences From Comparative Transcriptomics. Front Genet 9: 749.
doi: 10.3389/fgene.2018.00749 PMID:30713551
Kyriakis D, Kanterakis A, Manousaki T, Tsakogiannis A, Tsagris M, Tsamardinos I, Papaharisis L, Chatziplis D, Potamias G, Tsigenopoulos CS. 2019. Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD Sequencing. Front Genet 10: 675.
doi: 10.3389/fgene.2019.00675 PMID:31447879
Natsidis P, Tsakogiannis A, Pavlidis P, Tsigenopoulos CS, Manousaki T. 2019. Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling. Commun Biol 2: 400.
doi: 10.1038/s42003-019-0654-5 PMID:31925294
Berger TC, Vigeland MD, Hjorthaug HS, Etholm L, Nome CG, Taubøll E, Heuser K, Selmer KK. 2019. Neuronal and glial DNA methylation and gene expression changes in early epileptogenesis. PLoS One 14: e0226575.
doi: 10.1371/journal.pone.0226575 PMID:31887157
Rydning SL, Koht J, Sheng Y, Sowa P, Hjorthaug HS, Wedding IM, Erichsen AK, Hovden IA, Backe PH, Tallaksen CME, Vigeland MD, Selmer KK. 2019. Biallelic POLR3A variants confirmed as a frequent cause of hereditary ataxia and spastic paraparesis. Brain 142: e12.
doi: 10.1093/brain/awz041 PMID:30847471
Riiser ES, Haverkamp THA, Varadharajan S, Borgan Ø, Jakobsen KS, Jentoft S, Star B. 2019. Switching on the light: using metagenomic shotgun sequencing to characterize the intestinal microbiome of Atlantic cod. Environ Microbiol 21: 2576-2594.
doi: 10.1111/1462-2920.14652 PMID:31091345
Klemetsen T, Willassen NP, Karlsen CR. 2019. Full-length 16S rRNA gene classification of Atlantic salmon bacteria and effects of using different 16S variable regions on community structure analysis. Microbiologyopen 8: e898.
doi: 10.1002/mbo3.898 PMID:31271529
Harvey TN, Sandve SR, Jin Y, Vik JO, Torgersen JS. 2019. Liver slice culture as a model for lipid metabolism in fish. PeerJ 7: e7732.
doi: 10.7717/peerj.7732 PMID:31576253
Sumathipala D, Strømme P, Gilissen C, Corominas J, Frengen E, Misceo D. 2019. TBCK Encephaloneuropathy With Abnormal Lysosomal Storage: Use of a Structural Variant Bioinformatics Pipeline on Whole-Genome Sequencing Data Unravels a 20-Year-Old Clinical Mystery. Pediatr Neurol 96: 74-75.
doi: 10.1016/j.pediatrneurol.2019.02.001 PMID:30898414
Skrede I, Solbakken MH, Hess J, Fossdal CG, Hegnar O, Alfredsen G. 2019. Wood Modification by Furfuryl Alcohol Resulted in a Delayed Decomposition Response in Rhodonia (Postia) placenta. Appl Environ Microbiol 85.
doi: 10.1128/AEM.00338-19 PMID:31076422
Lagström S, van der Weele P, Rounge TB, Christiansen IK, King AJ, Ambur OH. 2019. HPV16 whole genome minority variants in persistent infections from young Dutch women. J Clin Virol 119: 24-30.
doi: 10.1016/j.jcv.2019.08.003 PMID:31446251
Dudin O, Ondracka A, Grau-Bové X, Haraldsen AA, Toyoda A, Suga H, Bråte J, Ruiz-Trillo I. 2019. A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization. Elife 8.
doi: 10.7554/eLife.49801 PMID:31647412
Mittermayer FH, Stiasny MH, Clemmesen C, Bayer T, Puvanendran V, Chierici M, Jentoft S, Reusch TBH. 2019. Transcriptome profiling reveals exposure to predicted end-of-century ocean acidification as a stealth stressor for Atlantic cod larvae. Sci Rep 9: 16908.
doi: 10.1038/s41598-019-52628-1 PMID:31729401
Bizuayehu TT, Mommens M, Sundaram AYM, Dhanasiri AKS, Babiak I. 2019. Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos. BMC Genomics 20: 315.
doi: 10.1186/s12864-019-5667-4 PMID:31014241
Gabrielsen ISM, Helgeland H, Akselsen H, D Aass HC, Sundaram AYM, Snowhite IV, Pugliese A, Flåm ST, Lie BA. 2019. Transcriptomes of antigen presenting cells in human thymus. PLoS One 14: e0218858.
doi: 10.1371/journal.pone.0218858 PMID:31261375
Sæbø Pettersen K, Sundaram AYM, Skjerdal T, Wasteson Y, Kijewski A, Lindbäck T, Aspholm M. 2019. Exposure to Broad-Spectrum Visible Light Causes Major Transcriptomic Changes in Listeria monocytogenes EGDe. Appl Environ Microbiol 85.
doi: 10.1128/AEM.01462-19 PMID:31492665
Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Farmer A, Henderson JM, Hussong MA, Moll P, Nguyen L, McNulty A, Shaffer JM, Shore S, Yip HK, Vitkovska J, Rayner S, Lie BA, Gilfillan GD. 2020. Systematic assessment of commercially available low-input miRNA library preparation kits. RNA Biol 17: 75-86.
doi: 10.1080/15476286.2019.1667741 PMID:31559901
Huszthy PC, Gopalakrishnan RP, Jacobsen JT, Haabeth OAW, Løset GÅ, Braathen R, Schenck K, Tveita AA, Munthe LA, Bogen B. 2019. B cell receptor ligation induces display of V-region peptides on MHC class II molecules to T cells. Proc Natl Acad Sci U S A 116: 25850-25859.
doi: 10.1073/pnas.1902836116 PMID:31796587
Brorson IS, Eriksson A, Leikfoss IS, Celius EG, Berg-Hansen P, Barcellos LF, Berge T, Harbo HF, Bos SD. 2019. No differential gene expression for CD4+ T cells of MS patients and healthy controls. Mult Scler J Exp Transl Clin 5: 2055217319856903.
doi: 10.1177/2055217319856903 PMID:31223483
Manousaki T, Koutsouveli V, Lagnel J, Kollias S, Tsigenopoulos CS, Arvanitidis C, Magoulas A, Dounas C, Dailianis T. 2019. A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts. BMC Res Notes 12: 813.
doi: 10.1186/s13104-019-4843-6 PMID:31852508
Paruch L, Paruch AM, Eiken HG, Sørheim R. 2019. Faecal pollution affects abundance and diversity of aquatic microbial community in anthropo-zoogenically influenced lotic ecosystems. Sci Rep 9: 19469.
doi: 10.1038/s41598-019-56058-x PMID:31857659
Ottoni C, Guellil M, Ozga AT, Stone AC, Kersten O, Bramanti B, Porcier S, Van Neer W. 2019. Metagenomic analysis of dental calculus in ancient Egyptian baboons. Sci Rep 9: 19637.
doi: 10.1038/s41598-019-56074-x PMID:31873124
Orr RJS, Haugen MN, Berning B, Bock P, Cumming RL, Florence WK, Hirose M, Di Martino E, Ramsfjell MH, Sannum MM, Smith AM, Vieira LM, Waeschenbach A, Liow LH. 2019. A genome-skimmed phylogeny of a widespread bryozoan family, Adeonidae. BMC Evol Biol 19: 235.
doi: 10.1186/s12862-019-1563-4 PMID:31881939
Rekdal SL, Anmarkrud JA, Lifjeld JT, Johnsen A. 2019. Extra-pair mating in a passerine bird with highly duplicated major histocompatibility complex class II: Preference for the golden mean. Mol Ecol 28: 5133-5144.
doi: 10.1111/mec.15273 PMID:31614034
Wikenius E, Moe V, Smith L, Heiervang ER, Berglund A. 2019. DNA methylation changes in infants between 6 and 52 weeks. Sci Rep 9: 17587.
doi: 10.1038/s41598-019-54355-z PMID:31772264
Khezri A, Narud B, Stenseth EB, Johannisson A, Myromslien FD, Gaustad AH, Wilson RC, Lyle R, Morrell JM, Kommisrud E, Ahmad R. 2019. DNA methylation patterns vary in boar sperm cells with different levels of DNA fragmentation. BMC Genomics 20: 897.
doi: 10.1186/s12864-019-6307-8 PMID:31775629
Mattingsdal M, Jorde PE, Knutsen H, Jentoft S, Stenseth NC, Sodeland M, Robalo JI, Hansen MM, André C, Blanco Gonzalez E. 2020. Demographic history has shaped the strongly differentiated corkwing wrasse populations in Northern Europe. Mol Ecol 29: 160-171.
doi: 10.1111/mec.15310 PMID:31733084
Söderberg JJ, Grgic M, Hjerde E, Haugen P. 2019. Aliivibrio wodanis as a production host: development of genetic tools for expression of cold-active enzymes. Microb Cell Fact 18: 197.
doi: 10.1186/s12934-019-1247-1 PMID:31711487
Gran-Stadniczeñko S, Krabberød AK, Sandaa RA, Yau S, Egge E, Edvardsen B. 2019. Seasonal Dynamics of Algae-Infecting Viruses and Their Inferred Interactions with Protists. Viruses 11.
doi: 10.3390/v11111043 PMID:31717498
Sundaram AYM, Garseth ÅH, Maccari G, Grimholt U. 2020. An Illumina approach to MHC typing of Atlantic salmon. Immunogenetics 72: 89-100.
doi: 10.1007/s00251-019-01143-8 PMID:31713647
Varadharajan S, Rastas P, Löytynoja A, Matschiner M, Calboli FCF, Guo B, Nederbragt AJ, Jakobsen KS, Merilä J. 2019. A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome. Genome Biol Evol 11: 3291-3308.
doi: 10.1093/gbe/evz240 PMID:31687752
Akkouh IA, Skrede S, Holmgren A, Ersland KM, Hansson L, Bahrami S, Andreassen OA, Steen VM, Djurovic S, Hughes T. 2019. Exploring lithium's transcriptional mechanisms of action in bipolar disorder: a multi-step study. Neuropsychopharmacology.
doi: 10.1038/s41386-019-0556-8 PMID:31652432
Dahal-Koirala S, Neumann RS, Jahnsen J, Lundin KEA, Sollid LM. 2019. On the immune response to barley in celiac disease: Biased and public T-cell receptor usage to a barley unique and immunodominant gluten epitope. Eur J Immunol.
doi: 10.1002/eji.201948253 PMID:31628754
Juvodden HT, Viken MK, Nordstrand SEH, Viste R, Westlye LT, Thorsby PM, Lie BA, Knudsen-Heier S. 2019. HLA and sleep parameter associations in post-H1N1 narcolepsy type 1 patients and first-degree relatives. Sleep.
doi: 10.1093/sleep/zsz239 PMID:31606740
Sävilammi T, Primmer CR, Varadharajan S, Guyomard R, Guiguen Y, Sandve SR, Vøllestad LA, Papakostas S, Lien S. 2019. The Chromosome-Level Genome Assembly of European Grayling Reveals Aspects of a Unique Genome Evolution Process Within Salmonids. G3 (Bethesda) 9: 1283-1294.
doi: 10.1534/g3.118.200919 PMID:30833292
McLeod A, Fagerlund A, Rud I, Axelsson L. 2019. Large Plasmid Complement Resolved: Complete Genome Sequencing of Lactobacillus plantarum MF1298, a Candidate Probiotic Strain Associated with Unfavorable Effect. Microorganisms 7.
doi: 10.3390/microorganisms7080262 PMID:31416278
Adam AC, Lie KK, Whatmore P, Jakt LM, Moren M, Skjærven KH. 2019. Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid. PLoS One 14: e0220934.
doi: 10.1371/journal.pone.0220934 PMID:31398226
Skugor A, Kjos NP, Sundaram AYM, Mydland LT, Ånestad R, Tauson AH, Øverland M. 2019. Effects of long-term feeding of rapeseed meal on skeletal muscle transcriptome, production efficiency and meat quality traits in Norwegian Landrace growing-finishing pigs. PLoS One 14: e0220441.
doi: 10.1371/journal.pone.0220441 PMID:31390356
Andresen AMS, Lutfi E, Ruyter B, Berge G, Gjøen T. 2019. Interaction between dietary fatty acids and genotype on immune response in Atlantic salmon (Salmo salar) after vaccination: A transcriptome study. PLoS One 14: e0219625.
doi: 10.1371/journal.pone.0219625 PMID:31365530
Furi L, Crawford LA, Rangel-Pineros G, Manso AS, De Ste Croix M, Haigh RD, Kwun MJ, Engelsen Fjelland K, Gilfillan GD, Bentley SD, Croucher NJ, Clokie MR, Oggioni MR. 2019. Methylation Warfare: Interaction of Pneumococcal Bacteriophages with Their Host. J Bacteriol 201.
doi: 10.1128/JB.00370-19 PMID:31285240
Iversen R, Roy B, Stamnaes J, Høydahl LS, Hnida K, Neumann RS, Korponay-Szabó IR, Lundin KEA, Sollid LM. 2019. Efficient T cell-B cell collaboration guides autoantibody epitope bias and onset of celiac disease. Proc Natl Acad Sci U S A 116: 15134-15139.
doi: 10.1073/pnas.1901561116 PMID:31285344
Bartolomé-Casado R, Landsverk OJB, Chauhan SK, Richter L, Phung D, Greiff V, Risnes LF, Yao Y, Neumann RS, Yaqub S, Øyen O, Horneland R, Aandahl EM, Paulsen V, Sollid LM, Qiao SW, Baekkevold ES, Jahnsen FL. 2019. Resident memory CD8 T cells persist for years in human small intestine. J Exp Med 216: 2412-2426.
doi: 10.1084/jem.20190414 PMID:31337737
Maurice S, Montes MS, Nielsen BJ, Bødker L, Martin MD, Jønck CG, Kjøller R, Rosendahl S. 2019. Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity. Mol Plant Pathol 20: 1134-1146.
doi: 10.1111/mpp.12819 PMID:31145530
Solbakken MH, Jentoft S, Reitan T, Mikkelsen H, Jakobsen KS, Seppola M. 2019. Whole transcriptome analysis of the Atlantic cod vaccine response reveals subtle changes in adaptive immunity. Comp Biochem Physiol Part D Genomics Proteomics 31: 100597.
doi: 10.1016/j.cbd.2019.100597 PMID:31176987
Datsomor AK, Zic N, Li K, Olsen RE, Jin Y, Vik JO, Edvardsen RB, Grammes F, Wargelius A, Winge P. 2019. CRISPR/Cas9-mediated ablation of elovl2 in Atlantic salmon (Salmo salar L.) inhibits elongation of polyunsaturated fatty acids and induces Srebp-1 and target genes. Sci Rep 9: 7533.
doi: 10.1038/s41598-019-43862-8 PMID:31101849
Karlsen TA, Sundaram AYM, Brinchmann JE. 2019. Single-Cell RNA Sequencing of In Vitro Expanded Chondrocytes: MSC-Like Cells With No Evidence of Distinct Subsets. Cartilage.
doi: 10.1177/1947603519847746 PMID:31072202
Soonvald L, Loit K, Runno-Paurson E, Astover A, Tedersoo L. 2019. The role of long-term mineral and organic fertilisation treatment in changing pathogen and symbiont community composition in soil. Applied Soil Ecology 141: 45-53.
doi: 10.1016/j.apsoil.2019.05.003
Li S, Hu X, Tian R, Guo Y, Chen J, Li Z, Zhao X, Kuang L, Ran D, Zhao H, Zhang X, Wang J, Xia L, Yue J, Yao G, Fu Q, Shi H. 2019. RNA-Seq-based transcriptomic profiling of primary interstitial cells of Cajal in response to bovine viral diarrhea virus infection. Vet Res Commun 43: 143-153.
doi: 10.1007/s11259-019-09754-y PMID:31102142
Lee S, Norheim F, Langleite TM, Gulseth HL, Birkeland KI, Drevon CA. 2019. Effects of long-term exercise on plasma adipokine levels and inflammation-related gene expression in subcutaneous adipose tissue in sedentary dysglycaemic, overweight men and sedentary normoglycaemic men of healthy weight. Diabetologia 62: 1048-1064.
doi: 10.1007/s00125-019-4866-5 PMID:31011777
Solbakken MH, Jentoft S, Reitan T, Mikkelsen H, Gregers TF, Bakke O, Jakobsen KS, Seppola M. 2019. Disentangling the immune response and host-pathogen interactions in Francisella noatunensis infected Atlantic cod. Comp Biochem Physiol Part D Genomics Proteomics 30: 333-346.
doi: 10.1016/j.cbd.2019.04.004 PMID:31054474
Tveit AT, Hestnes AG, Robinson SL, Schintlmeister A, Dedysh SN, Jehmlich N, von Bergen M, Herbold C, Wagner M, Richter A, Svenning MM. 2019. Widespread soil bacterium that oxidizes atmospheric methane. Proc Natl Acad Sci U S A 116: 8515-8524.
doi: 10.1073/pnas.1817812116 PMID:30962365
Bråte J, Fuss J, Jakobsen KS, Klaveness D. 2019. Draft genome assembly and transcriptome sequencing of the golden algae Hydrurus foetidus (Chrysophyceae). F1000Res 8: 401.
doi: 10.12688/f1000research.16734.1
Camacho E, González-de la Fuente S, Rastrojo A, Peiró-Pastor R, Solana JC, Tabera L, Gamarro F, Carrasco-Ramiro F, Requena JM, Aguado B. 2019. Complete assembly of the Leishmania donovani (HU3 strain) genome and transcriptome annotation. Sci Rep 9: 6127.
doi: 10.1038/s41598-019-42511-4 PMID:30992521
Lee S, Kolset SO, Birkeland KI, Drevon CA, Reine TM. 2019. Acute exercise increases syndecan-1 and -4 serum concentrations. Glycoconj J 36: 113-125.
doi: 10.1007/s10719-019-09869-z PMID:30949875
Fröhlich C, Sørum V, Thomassen AM, Johnsen PJ, Leiros HS, Samuelsen Ø. 2019. OXA-48-Mediated Ceftazidime-Avibactam Resistance Is Associated with Evolutionary Trade-Offs. mSphere 4.
doi: 10.1128/mSphere.00024-19 PMID:30918055
Naville M, Henriet S, Warren I, Sumic S, Reeve M, Volff JN, Chourrout D. 2019. Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements. Curr Biol 29: 1161-1168.e6.
doi: 10.1016/j.cub.2019.01.080 PMID:30880010
Slettemeås JS, Sunde M, Ulstad CR, Norström M, Wester AL, Urdahl AM. 2019. Occurrence and characterization of quinolone resistant Escherichia coli from Norwegian turkey meat and complete sequence of an IncX1 plasmid encoding qnrS1. PLoS One 14: e0212936.
doi: 10.1371/journal.pone.0212936 PMID:30856202
Salgado-Flores A, Tveit AT, Wright AD, Pope PB, Sundset MA. 2019. Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway. PLoS One 14: e0213503.
doi: 10.1371/journal.pone.0213503 PMID:30856229
Kaitetzidou E, Katsiadaki I, Lagnel J, Antonopoulou E, Sarropoulou E. 2019. Unravelling paralogous gene expression dynamics during three-spined stickleback embryogenesis. Sci Rep 9: 3752.
doi: 10.1038/s41598-019-40127-2 PMID:30842559
Choquet M, Smolina I, Dhanasiri AKS, Blanco-Bercial L, Kopp M, Jueterbock A, Sundaram AYM, Hoarau G. 2019. Towards population genomics in non-model species with large genomes: a case study of the marine zooplankton Calanus finmarchicus. R Soc Open Sci 6: 180608.
doi: 10.1098/rsos.180608 PMID:30891252
Lunde A, Okaty BW, Dymecki SM, Glover JC. 2019. Molecular Profiling Defines Evolutionarily Conserved Transcription Factor Signatures of Major Vestibulospinal Neuron Groups. eNeuro 6.
doi: 10.1523/ENEURO.0475-18.2019 PMID:30899776
Sánchez M, Blesa A, Sacristán-Horcajada E, Berenguer J. 2019. Complete Genome Sequence of Mycolicibacterium hassiacum DSM 44199. Microbiol Resour Announc 8.
doi: 10.1128/MRA.01522-18 PMID:30701245
Sheng X, Nenseth HZ, Qu S, Kuzu OF, Frahnow T, Simon L, Greene S, Zeng Q, Fazli L, Rennie PS, Mills IG, Danielsen H, Theis F, Patterson JB, Jin Y, Saatcioglu F. 2019. IRE1α-XBP1s pathway promotes prostate cancer by activating c-MYC signaling. Nat Commun 10: 323.
doi: 10.1038/s41467-018-08152-3 PMID:30679434
Blesa A, Sánchez M, Sacristán-Horcajada E, Fuente SG, Peiró R, Berenguer J. 2019. Into the Thermus Mobilome: Presence, Diversity and Recent Activities of Insertion Sequences Across Thermus spp. Microorganisms 7.
doi: 10.3390/microorganisms7010025 PMID:30669685
Barth JMI, Villegas-Ríos D, Freitas C, Moland E, Star B, André C, Knutsen H, Bradbury I, Dierking J, Petereit C, Righton D, Metcalfe J, Jakobsen KS, Olsen EM, Jentoft S. 2019. Disentangling structural genomic and behavioural barriers in a sea of connectivity. Mol Ecol 28: 1394-1411.
doi: 10.1111/mec.15010 PMID:30633410
Junges R, Sturød K, Salvadori G, Åmdal HA, Chen T, Petersen FC. 2019. Characterization of a Signaling System in Streptococcus mitis That Mediates Interspecies Communication with Streptococcus pneumoniae. Appl Environ Microbiol 85.
doi: 10.1128/AEM.02297-18 PMID:30389765
Jin Y, Olsen RE, Østensen MA, Gillard GB, Li K, Harvey TN, Santi N, Vadstein O, Vik JO, Sandve SR, Olsen Y. 2019. Transcriptional regulation of lipid metabolism when salmon fry switches from endogenous to exogenous feeding. Aquaculture 503: 422-9.
doi: 10.1016/j.aquaculture.2018.12.089
Nistelberger HM, Pálsdóttir AH, Star B, Leifsson R, Gondek AT, Orlando L, Barrett JH, Hallsson JH, Boessenkool S. 2019. Sexing Viking Age horses from burial and non-burial sites in Iceland using ancient DNA. Journal of Archaeological Science 101: 115-22.
doi: 10.1016/j.jas.2018.11.007
Ketto IA, Abdelghani A, Johansen AG, Øyaas J, Skeie SB. 2019. Effect of milk protein genetic polymorphisms on rennet and acid coagulation properties after standardisation of protein content. International Dairy Journal 88: 18-24.
doi: 10.1016/j.idairyj.2018.08.008
2018
Rydning SL, Dudesek A, Rimmele F, Funke C, Krüger S, Biskup S, Vigeland MD, Hjorthaug HS, Sejersted Y, Tallaksen C, Selmer KK, Kamm C. 2018. A novel heterozygous variant in ERLIN2 causes autosomal dominant pure hereditary spastic paraplegia. Eur J Neurol 25: 943-e71.
doi: 10.1111/ene.13625 PMID:29528531
Wang S, Singh SK, Katika MR, Lopez-Aviles S, Hurtado A. 2018. High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines. Int J Mol Sci 19.
doi: 10.3390/ijms19124123 PMID:30572598
Palma M, Krstic A, Peña Perez L, Berglöf A, Meinke S, Wang Q, Blomberg KEM, Kamali-Moghaddam M, Shen Q, Jaremko G, Lundin J, De Paepe A, Höglund P, Kimby E, Österborg A, Månsson R, Smith CIE. 2018. Ibrutinib induces rapid down-regulation of inflammatory markers and altered transcription of chronic lymphocytic leukaemia-related genes in blood and lymph nodes. Br J Haematol 183: 212-224.
doi: 10.1111/bjh.15516 PMID:30125946
Riiser ES, Haverkamp THA, Borgan Ø, Jakobsen KS, Jentoft S, Star B. 2018. A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal Microbiome in Two Geographically Separated Atlantic cod Populations. Front Microbiol 9: 1561.
doi: 10.3389/fmicb.2018.01561 PMID:30057577
Gulla S, Barnes AC, Welch TJ, Romalde JL, Ryder D, Ormsby MJ, Carson J, Lagesen K, Verner-Jeffreys DW, Davies RL, Colquhoun DJ. 2018. Multilocus Variable-Number Tandem-Repeat Analysis of Yersinia ruckeri Confirms the Existence of Host Specificity, Geographic Endemism, and Anthropogenic Dissemination of Virulent Clones. Appl Environ Microbiol 84.
doi: 10.1128/AEM.00730-18 PMID:29884756
Poulsen LC, Edelmann RJ, Krüger S, Diéguez-Hurtado R, Shah A, Stav-Noraas TE, Renzi A, Szymanska M, Wang J, Ehling M, Benedito R, Kasprzycka M, Bækkevold E, Sundnes O, Midwood KS, Scott H, Collas P, Siebel CW, Adams RH, Haraldsen G, Sundlisæter E, Hol J. 2018. Inhibition of Endothelial NOTCH1 Signaling Attenuates Inflammation by Reducing Cytokine-Mediated Histone Acetylation at Inflammatory Enhancers. Arterioscler Thromb Vasc Biol 38: 854-869.
doi: 10.1161/ATVBAHA.117.310388 PMID:29449332
Richter L, Landsverk OJB, Atlasy N, Bujko A, Yaqub S, Horneland R, Øyen O, Aandahl EM, Lundin KEA, Stunnenberg HG, Bækkevold ES, Jahnsen FL. 2018. Transcriptional profiling reveals monocyte-related macrophages phenotypically resembling DC in human intestine. Mucosal Immunol 11: 1512-1523.
doi: 10.1038/s41385-018-0060-1 PMID:30038215
Horn SS, Ruyter B, Meuwissen THE, Hillestad B, Sonesson AK. 2018. Genetic effects of fatty acid composition in muscle of Atlantic salmon. Genet Sel Evol 50: 23.
doi: 10.1186/s12711-018-0394-x PMID:29720078
Eguíluz-Gracia I, Malmstrom K, Dheyauldeen SA, Lohi J, Sajantila A, Aaløkken R, Sundaram AYM, Gilfillan GD, Makela M, Baekkevold ES, Jahnsen FL. 2018. Monocytes accumulate in the airways of children with fatal asthma. Clin Exp Allergy 48: 1631-1639.
doi: 10.1111/cea.13265 PMID:30184280
Anslan S, Nilsson RH, Wurzbacher C, Baldrian P, Leho Tedersoo, Bahram M. 2018. Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. MycoKeys.
doi: 10.3897/mycokeys.39.28109 PMID:30271256
Storesund JE, Lanzèn A, García-Moyano A, Reysenbach AL, Øvreås L. 2018. Diversity patterns and isolation of Planctomycetes associated with metalliferous deposits from hydrothermal vent fields along the Valu Fa Ridge (SW Pacific). Antonie Van Leeuwenhoek 111: 841-858.
doi: 10.1007/s10482-018-1026-8 PMID:29423768
Vander Roost J, Daae FL, Steen IH, Thorseth IH, Dahle H. 2018. Distribution Patterns of Iron-Oxidizing Zeta- and Beta-Proteobacteria From Different Environmental Settings at the Jan Mayen Vent Fields. Front Microbiol 9: 3008.
doi: 10.3389/fmicb.2018.03008 PMID:30574135
Dahle H, Le Moine Bauer S, Baumberger T, Stokke R, Pedersen RB, Thorseth IH, Steen IH. 2018. Energy Landscapes in Hydrothermal Chimneys Shape Distributions of Primary Producers. Front Microbiol 9: 1570.
doi: 10.3389/fmicb.2018.01570 PMID:30061874
Le Moine Bauer S, Stensland A, Daae FL, Sandaa RA, Thorseth IH, Steen IH, Dahle H. 2018. Water Masses and Depth Structure Prokaryotic and T4-Like Viral Communities Around Hydrothermal Systems of the Nordic Seas. Front Microbiol 9: 1002.
doi: 10.3389/fmicb.2018.01002 PMID:29904373
Kjærner-Semb E, Ayllon F, Kleppe L, Sørhus E, Skaftnesmo K, Furmanek T, Segafredo FT, Thorsen A, Fjelldal PG, Hansen T, Taranger GL, Andersson E, Schulz RW, Wargelius A, Edvardsen RB. 2018. Vgll3 and the Hippo pathway are regulated in Sertoli cells upon entry and during puberty in Atlantic salmon testis. Sci Rep 8: 1912.
doi: 10.1038/s41598-018-20308-1 PMID:29382956
Sommer C, Lee S, Gulseth HL, Jensen J, Drevon CA, Birkeland KI. 2018. Soluble Leptin Receptor Predicts Insulin Sensitivity and Correlates With Upregulation of Metabolic Pathways in Men. J Clin Endocrinol Metab 103: 1024-1032.
doi: 10.1210/jc.2017-02126 PMID:29300960
Santoro F, Pettini E, Kazmin D, Ciabattini A, Fiorino F, Gilfillan GD, Evenroed IM, Andersen P, Pozzi G, Medaglini D. 2018. Transcriptomics of the Vaccine Immune Response: Priming With Adjuvant Modulates Recall Innate Responses After Boosting. Front Immunol 9: 1248.
doi: 10.3389/fimmu.2018.01248 PMID:29922291
Rounge TB, Umu SU, Keller A, Meese E, Ursin G, Tretli S, Lyle R, Langseth H. 2018. Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity. Sci Rep 8: 17650.
doi: 10.1038/s41598-018-35974-4 PMID:30518766
Kunath BJ, Delogu F, Naas AE, Arntzen MØ, Eijsink VGH, Henrissat B, Hvidsten TR, Pope PB. 2019. From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. ISME J 13: 603-617.
doi: 10.1038/s41396-018-0290-y PMID:30315317
Müller O, Seuthe L, Bratbak G, Paulsen ML. 2018. Bacterial Response to Permafrost Derived Organic Matter Input in an Arctic Fjord. Front Mar Sci 5.
doi: 10.3389/fmars.2018.00263
Schouw A, Vulcano F, Roalkvam I, Hocking WP, Reeves E, Stokke R, Bødtker G, Steen IH. 2018. Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System. Microorganisms 6.
doi: 10.3390/microorganisms6030063 PMID:29973550
Kintses B, Méhi O, Ari E, Számel M, Györkei Á, Jangir PK, Nagy I, Pál F, Fekete G, Tengölics R, Nyerges Á, Likó I, Bálint A, Molnár T, Bálint B, Vásárhelyi BM, Bustamante M, Papp B, Pál C. 2019. Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota. Nat Microbiol 4: 447-458.
doi: 10.1038/s41564-018-0313-5 PMID:30559406
Vestrum RI, Attramadal KJK, Winge P, Li K, Olsen Y, Bones AM, Vadstein O, Bakke I. 2018. Rearing Water Treatment Induces Microbial Selection Influencing the Microbiota and Pathogen Associated Transcripts of Cod (Gadus morhua) Larvae. Front Microbiol 9: 851.
doi: 10.3389/fmicb.2018.00851 PMID:29765364
Margos G, Gofton A, Wibberg D, Dangel A, Marosevic D, Loh SM, Oskam C, Fingerle V. 2018. The genus Borrelia reloaded. PLoS One 13: e0208432.
doi: 10.1371/journal.pone.0208432 PMID:30586413
Sandaa RA, E Storesund J, Olesin E, Lund Paulsen M, Larsen A, Bratbak G, Ray JL. 2018. Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host⁻Viral Relationships in an Arctic Marine Ecosystem. Viruses 10.
doi: 10.3390/v10120715 PMID:30558156
Hoel H, Hove-Skovsgaard M, Hov JR, Gaardbo JC, Holm K, Kummen M, Rudi K, Nwosu F, Valeur J, Gelpi M, Seljeflot I, Ueland PM, Gerstoft J, Ullum H, Aukrust P, Nielsen SD, Trøseid M. 2018. Impact of HIV and Type 2 diabetes on Gut Microbiota Diversity, Tryptophan Catabolism and Endothelial Dysfunction. Sci Rep 8: 6725.
doi: 10.1038/s41598-018-25168-3 PMID:29712976
Arnbjerg CJ, Vestad B, Hov JR, Pedersen KK, Jespersen S, Johannesen HH, Holm K, Halvorsen B, Fallentin E, Hansen AE, Lange T, Kjær A, Trøseid M, Fischer BM, Nielsen SD. 2018. Effect of Lactobacillus rhamnosus GG Supplementation on Intestinal Inflammation Assessed by PET/MRI Scans and Gut Microbiota Composition in HIV-Infected Individuals. J Acquir Immune Defic Syndr 78: 450-457.
doi: 10.1097/QAI.0000000000001693 PMID:29874201
Mattingsdal M, Jentoft S, Tørresen OK, Knutsen H, Hansen MM, Robalo JI, Zagrodzka Z, André C, Gonzalez EB. 2018. A continuous genome assembly of the corkwing wrasse (Symphodus melops). Genomics 110: 399-403.
doi: 10.1016/j.ygeno.2018.04.009 PMID:29665418
Jin Y, Olsen RE, Østensen MA, Gillard GB, Korsvoll SA, Santi N, Gjuvsland AB, Vik JO, Torgersen JS, Sandve SR, Olsen Y. 2018. Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry. BMC Genomics 19: 253.
doi: 10.1186/s12864-018-4651-8 PMID:29661132
Avershina E, Angell IL, Simpson M, Storrø O, Øien T, Johnsen R, Rudi K. 2018. Low Maternal Microbiota Sharing across Gut, Breast Milk and Vagina, as Revealed by 16S rRNA Gene and Reduced Metagenomic Sequencing. Genes (Basel) 9.
doi: 10.3390/genes9050231 PMID:29724017
Yao Y, Zia A, Wyrożemski Ł, Lindeman I, Sandve GK, Qiao SW. 2018. Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. PLoS One 13: e0208484.
doi: 10.1371/journal.pone.0208484 PMID:30517183
Varadharajan S, Sandve SR, Gillard GB, Tørresen OK, Mulugeta TD, Hvidsten TR, Lien S, Asbjørn Vøllestad L, Jentoft S, Nederbragt AJ, Jakobsen KS. 2018. The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication. Genome Biol Evol 10: 2785-2800.
doi: 10.1093/gbe/evy201 PMID:30239729
Trosvik P, de Muinck EJ, Rueness EK, Fashing PJ, Beierschmitt EC, Callingham KR, Kraus JB, Trew TH, Moges A, Mekonnen A, Venkataraman VV, Nguyen N. 2018. Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate. Microbiome 6: 84.
doi: 10.1186/s40168-018-0468-6 PMID:29729671
Star B, Barrett JH, Gondek AT, Boessenkool S. 2018. Ancient DNA reveals the chronology of walrus ivory trade from Norse Greenland. Proc Biol Sci 285.
doi: 10.1098/rspb.2018.0978 PMID:30089624
Wrobel A, Ottoni C, Leo JC, Linke D. 2018. pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System. Front Cell Infect Microbiol 8: 373.
doi: 10.3389/fcimb.2018.00373 PMID:30460204
Malmstrøm M, Britz R, Matschiner M, Tørresen OK, Hadiaty RK, Yaakob N, Tan HH, Jakobsen KS, Salzburger W, Rüber L. 2018. The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes. Genome Biol Evol 10: 1088-1103.
doi: 10.1093/gbe/evy058 PMID:29684203
Langangen Ø, Färber L, Stige LC, Diekert FK, Barth JMI, Matschiner M, Berg PR, Star B, Stenseth NC, Jentoft S, Durant JM. 2019. Ticket to spawn: Combining economic and genetic data to evaluate the effect of climate and demographic structure on spawning distribution in Atlantic cod. Glob Chang Biol 25: 134-143.
doi: 10.1111/gcb.14474 PMID:30300937
Liu X, Luo Y, Li Z, Wei G. 2018. Functional Analysis of a Putative Type III Secretion System in Stress Adaption by Mesorhizobium alhagi CCNWXJ12-2T. Front Microbiol 9: 263.
doi: 10.3389/fmicb.2018.00263 PMID:29515545
Müller O, Wilson B, Paulsen ML, Rumińska A, Armo HR, Bratbak G, Øvreås L. 2018. Spatiotemporal Dynamics of Ammonia-Oxidizing Thaumarchaeota in Distinct Arctic Water Masses. Front Microbiol 9: 24.
doi: 10.3389/fmicb.2018.00024 PMID:29410658
Mable BK, Brysting AK, Jørgensen MH, Carbonell AK, Kiefer C, Ruiz-Duarte P, Lagesen K, Koch MA. 2018. Adding Complexity to Complexity: Gene Family Evolution in Polyploids. Front Ecol Evol 6.
doi: 10.3389/fevo.2018.00114
Engesmo A, Strand D, Gran-Stadniczeñko S, Edvardsen B, Medlin LK, Eikrem W. 2018. Development of a qPCR assay to detect and quantify ichthyotoxic flagellates along the Norwegian coast, and the first Norwegian record of Fibrocapsa japonica (Raphidophyceae). Harmful Algae 75: 105-117.
doi: 10.1016/j.hal.2018.04.007 PMID:29778220
Sæther T, Paulsen SM, Tungen JE, Vik A, Aursnes M, Holen T, Hansen TV, Nebb HI. 2018. Synthesis and biological evaluations of marine oxohexadecenoic acids: PPARα/γ dual agonism and anti-diabetic target gene effects. Eur J Med Chem 155: 736-753.
doi: 10.1016/j.ejmech.2018.06.034 PMID:29940464
Risnes LF, Christophersen A, Dahal-Koirala S, Neumann RS, Sandve GK, Sarna VK, Lundin KE, Qiao SW, Sollid LM. 2018. Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. J Clin Invest 128: 2642-2650.
doi: 10.1172/JCI98819 PMID:29757191
Lee S, Olsen T, Vinknes KJ, Refsum H, Gulseth HL, Birkeland KI, Drevon CA. 2018. Plasma Sulphur-Containing Amino Acids, Physical Exercise and Insulin Sensitivity in Overweight Dysglycemic and Normal Weight Normoglycemic Men. Nutrients 11.
doi: 10.3390/nu11010010 PMID:30577516
Lund Paulsen M, Müller O, Larsen A, Møller EF, Middelboe M, Sejr MK, Stedmon C. 2019. Biological transformation of Arctic dissolved organic matter in a NE Greenland fjord. Limnol Oceanogr 64: 1014-33.
doi: 10.1002/lno.11091
Moore TM, Zhou Z, Cohn W, Norheim F, Lin AJ, Kalajian N, Strumwasser AR, Cory K, Whitney K, Ho T, Ho T, Lee JL, Rucker DH, Shirihai O, van der Bliek AM, Whitelegge JP, Seldin MM, Lusis AJ, Lee S, Drevon CA, Mahata SK, Turcotte LP, Hevener AL. 2019. The impact of exercise on mitochondrial dynamics and the role of Drp1 in exercise performance and training adaptations in skeletal muscle. Mol Metab 21: 51-67.
doi: 10.1016/j.molmet.2018.11.012 PMID:30591411
Fuente SG, Camacho E, Peiró-Pastor R, Rastrojo A, Carrasco-Ramiro F, Aguado B, Requena/ JM. 2018. Complete and de novo assembly of the Leishmania braziliensis (M2904) genome. Mem Inst Oswaldo Cruz 114: e180438.
doi: 10.1590/0074-02760180438 PMID:30540030
Rouard M, Droc G, Martin G, Sardos J, Hueber Y, Guignon V, Cenci A, Geigle B, Hibbins MS, Yahiaoui N, Baurens FC, Berry V, Hahn MW, D'Hont A, Roux N. 2018. Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana). Genome Biol Evol 10: 3129-3140.
doi: 10.1093/gbe/evy227 PMID:30321324
Dahal-Koirala S, Ciacchi L, Petersen J, Risnes LF, Neumann RS, Christophersen A, Lundin KEA, Reid HH, Qiao SW, Rossjohn J, Sollid LM. 2019. Discriminative T-cell receptor recognition of highly homologous HLA-DQ2-bound gluten epitopes. J Biol Chem 294: 941-952.
doi: 10.1074/jbc.RA118.005736 PMID:30455354
Namouchi A, Guellil M, Kersten O, Hänsch S, Ottoni C, Schmid BV, Pacciani E, Quaglia L, Vermunt M, Bauer EL, Derrick M, Jensen AØ, Kacki S, Cohn SK Jr, Stenseth NC, Bramanti B. 2018. Integrative approach using Yersinia pestis genomes to revisit the historical landscape of plague during the Medieval Period. Proc Natl Acad Sci U S A 115: E11790-E11797.
doi: 10.1073/pnas.1812865115 PMID:30478041
Sivertsen A, Janice J, Pedersen T, Wagner TM, Hegstad J, Hegstad K. 2018. The Enterococcus Cassette Chromosome, a Genomic Variation Enabler in Enterococci. mSphere 3.
doi: 10.1128/mSphere.00402-18 PMID:30404935
Gran-Stadniczeñko S, Egge E, Hostyeva V, Logares R, Eikrem W, Edvardsen B. 2019. Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy. J Eukaryot Microbiol 66: 494-513.
doi: 10.1111/jeu.12700 PMID:30414334
Stüken A, Haverkamp THA, Dirven HAAM, Gilfillan GD, Leithaug M, Lund V. 2018. Microbial Community Composition of Tap Water and Biofilms Treated with or without Copper-Silver Ionization. Environ Sci Technol 52: 3354-3364.
doi: 10.1021/acs.est.7b05963 PMID:29461810
Nordgård ASR, Bergland WH, Bakke R, Østgaard K, Bakke I. 2018. Mapping anaerobic sludge bed community adaptations to manure supernatant in biogas reactors. Sci Rep 8: 15870.
doi: 10.1038/s41598-018-34088-1 PMID:30367088
Brynildsrud OB, Pepperell CS, Suffys P, Grandjean L, Monteserin J, Debech N, Bohlin J, Alfsnes K, Pettersson JO, Kirkeleite I, Fandinho F, da Silva MA, Perdigao J, Portugal I, Viveiros M, Clark T, Caws M, Dunstan S, Thai PVK, Lopez B, Ritacco V, Kitchen A, Brown TS, van Soolingen D, O'Neill MB, Holt KE, Feil EJ, Mathema B, Balloux F, Eldholm V. 2018. Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation. Sci Adv 4: eaat5869.
doi: 10.1126/sciadv.aat5869 PMID:30345355
Hoff SNK, Baalsrud HT, Tooming-Klunderud A, Skage M, Richmond T, Obernosterer G, Shirzadi R, Tørresen OK, Jakobsen KS, Jentoft S. 2019. Long-read sequence capture of the haemoglobin gene clusters across codfish species. Mol Ecol Resour 19: 245-259.
doi: 10.1111/1755-0998.12955 PMID:30329222
Lekang K, Hadziavdic K, Sandnes Skaar K, Jonassen I, Thompson EM, Troedsson C. 2018. Development and testing of an 18S rRNA phylogenetic microarray for marine sediments. J Microbiol Methods 154: 95-106.
doi: 10.1016/j.mimet.2018.10.007 PMID:30336165
Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K. 2018. Unicellular Origin of the Animal MicroRNA Machinery. Curr Biol 28: 3288-3295.e5.
doi: 10.1016/j.cub.2018.08.018 PMID:30318349
Strømme P, Groeneweg S, Lima de Souza EC, Zevenbergen C, Torgersbråten A, Holmgren A, Gurcan E, Meima ME, Peeters RP, Visser WE, Høneren Johansson L, Babovic A, Zetterberg H, Heuer H, Frengen E, Misceo D, Visser TJ. 2018. Mutated Thyroid Hormone Transporter OATP1C1 Associates with Severe Brain Hypometabolism and Juvenile Neurodegeneration. Thyroid 28: 1406-1415.
doi: 10.1089/thy.2018.0595 PMID:30296914
Hughes T, Sønderby IE, Polushina T, Hansson L, Holmgren A, Athanasiu L, Melbø-Jørgensen C, Hassani S, Hoeffding LK, Herms S, Bergen SE, Karlsson R, Song J, Rietschel M, Nöthen MM, Forstner AJ, Hoffmann P, Hultman CM, Landén M, Cichon S, Werge T, Andreassen OA, Le Hellard S, Djurovic S. 2018. Elevated expression of a minor isoform of ANK3 is a risk factor for bipolar disorder. Transl Psychiatry 8: 210.
doi: 10.1038/s41398-018-0175-x PMID:30297702
Callejas-Hernández F, Rastrojo A, Poveda C, Gironès N, Fresno M. 2018. Genomic assemblies of newly sequenced Trypanosoma cruzi strains reveal new genomic expansion and greater complexity. Sci Rep 8: 14631.
doi: 10.1038/s41598-018-32877-2 PMID:30279473
Senthakumaran T, Brandal LT, Lindstedt BA, Jørgensen SB, Charnock C, Tunsjø HS. 2018. Implications of stx loss for clinical diagnostics of Shiga toxin-producing Escherichia coli. Eur J Clin Microbiol Infect Dis 37: 2361-2370.
doi: 10.1007/s10096-018-3384-6 PMID:30267169
Guellil M, Kersten O, Namouchi A, Bauer EL, Derrick M, Jensen AØ, Stenseth NC, Bramanti B. 2018. Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia. Proc Natl Acad Sci U S A 115: 10422-10427.
doi: 10.1073/pnas.1807266115 PMID:30249639
Gofton AW, Margos G, Fingerle V, Hepner S, Loh SM, Ryan U, Irwin P, Oskam CL. 2018. Genome-wide analysis of Borrelia turcica and 'Candidatus Borrelia tachyglossi' shows relapsing fever-like genomes with unique genomic links to Lyme disease Borrelia. Infect Genet Evol 66: 72-81.
doi: 10.1016/j.meegid.2018.09.013 PMID:30240834
López-Muñoz AD, Rastrojo A, Alcamí A. 2018. Complete Genome Sequence of Herpes Simplex Virus 2 Strain 333. Microbiol Resour Announc 7.
doi: 10.1128/MRA.00870-18 PMID:30533931
Haverkamp THA, Geslin C, Lossouarn J, Podosokorskaya OA, Kublanov I, Nesbø CL. 2018. Thermosipho spp. Immune System Differences Affect Variation in Genome Size and Geographical Distributions. Genome Biol Evol 10: 2853-2866.
doi: 10.1093/gbe/evy202 PMID:30239713
Orr RJS, Zhao S, Klaveness D, Yabuki A, Ikeda K, Watanabe MM, Shalchian-Tabrizi K. 2018. Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evol Biol 18: 115.
doi: 10.1186/s12862-018-1224-z PMID:30021531
Ayabina D, Ronning JO, Alfsnes K, Debech N, Brynildsrud OB, Arnesen T, Norheim G, Mengshoel AT, Rykkvin R, Dahle UR, Colijn C, Eldholm V. 2018. Genome-based transmission modelling separates imported tuberculosis from recent transmission within an immigrant population. Microb Genom 4.
doi: 10.1099/mgen.0.000219 PMID:30216147
Orr RJ, Waeschenbach A, Enevoldsen EL, Boeve JP, Haugen MN, Voje KL, Porter J, Zágoršek K, Smith AM, Gordon DP, Liow LH. 2018. Bryozoan genera Fenestrulina and Microporella no longer confamilial; multi-gene phylogeny supports separation. 186: 190-9.
doi: 10.1093/zoolinnean/zly055
Christensen KA, Rondeau EB, Minkley DR, Leong JS, Nugent CM, Danzmann RG, Ferguson MM, Stadnik A, Devlin RH, Muzzerall R, Edwards M, Davidson WS, Koop BF. 2018. The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly. PLoS One 13: e0204076.
doi: 10.1371/journal.pone.0204076 PMID:30212580
Taiaroa G, Samuelsen Ø, Kristensen T, Økstad OAL, Heikal A. 2018. Complete Genome Sequence of Pseudomonas aeruginosa K34-7, a Carbapenem-Resistant Isolate of the High-Risk Sequence Type 233. Microbiol Resour Announc 7.
doi: 10.1128/MRA.00886-18 PMID:30533874
Tsagaraki TM, Pree B, Leiknes Ø, Larsen A, Bratbak G, Øvreås L, Egge JK, Spanek R, Paulsen ML, Olsen Y, Vadstein O, Thingstad TF. 2018. Bacterial community composition responds to changes in copepod abundance and alters ecosystem function in an Arctic mesocosm study. ISME J 12: 2694-2705.
doi: 10.1038/s41396-018-0217-7 PMID:29991763
Eide M, Rydbeck H, Tørresen OK, Lille-Langøy R, Puntervoll P, Goldstone JV, Jakobsen KS, Stegeman J, Goksøyr A, Karlsen OA. 2018. Independent losses of a xenobiotic receptor across teleost evolution. Sci Rep 8: 10404.
doi: 10.1038/s41598-018-28498-4 PMID:29991818
Rodríguez-Castañeda F, Lemma RB, Cuervo I, Bengtsen M, Moen LM, Ledsaak M, Eskeland R, Gabrielsen OS. 2018. The SUMO protease SENP1 and the chromatin remodeler CHD3 interact and jointly affect chromatin accessibility and gene expression. J Biol Chem 293: 15439-15454.
doi: 10.1074/jbc.RA118.002844 PMID:30082317
Mayerhofer CCK, Awoyemi AO, Moscavitch SD, Lappegård KT, Hov JR, Aukrust P, Hovland A, Lorenzo A, Halvorsen S, Seljeflot I, Gullestad L, Trøseid M, Broch K. 2018. Design of the GutHeart-targeting gut microbiota to treat heart failure-trial: a Phase II, randomized clinical trial. ESC Heart Fail 5: 977-984.
doi: 10.1002/ehf2.12332 PMID:30088346
Adam AC, Skjærven KH, Whatmore P, Moren M, Lie KK. 2018. Parental high dietary arachidonic acid levels modulated the hepatic transcriptome of adult zebrafish (Danio rerio) progeny. PLoS One 13: e0201278.
doi: 10.1371/journal.pone.0201278 PMID:30070994
Jin Y, Olsen RE, Gillard GB, Østensen MA, Korsvoll SA, Santi N, Vik JO, Sandve SR, Olsen Y. 2018. A systemic study of lipid metabolism regulation in salmon fingerlings and early juveniles fed plant oil. Br J Nutr 120: 653-664.
doi: 10.1017/S0007114518001885 PMID:30064538
Bahram M, Anslan S, Hildebrand F, Bork P, Tedersoo L. 2019. Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment. Environ Microbiol Rep 11: 487-494.
doi: 10.1111/1758-2229.12684 PMID:30058291
Müller O, Bang-Andreasen T, White RA 3rd, Elberling B, Taş N, Kneafsey T, Jansson JK, Øvreås L. 2018. Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates. Environ Microbiol 20: 4328-4342.
doi: 10.1111/1462-2920.14348 PMID:29971895
Jørgensen TE, Karlsen BO, Emblem Å, Breines R, Andreassen M, Rounge TB, Nederbragt AJ, Jakobsen KS, Nymark M, Ursvik A, Coucheron DH, Jakt LM, Nordeide JT, Moum T, Johansen SD. 2018. Mitochondrial genome variation of Atlantic cod. BMC Res Notes 11: 397.
doi: 10.1186/s13104-018-3506-3 PMID:29921324
Salvadori G, Junges R, Åmdal HA, Chen T, Morrison DA, Petersen FC. 2018. High-resolution profiles of the Streptococcus mitis CSP signaling pathway reveal core and strain-specific regulated genes. BMC Genomics 19: 453.
doi: 10.1186/s12864-018-4802-y PMID:29898666
de Muinck EJ, Trosvik P. 2018. Individuality and convergence of the infant gut microbiota during the first year of life. Nat Commun 9: 2233.
doi: 10.1038/s41467-018-04641-7 PMID:29884786
Nyerges Á, Csörgő B, Draskovits G, Kintses B, Szili P, Ferenc G, Révész T, Ari E, Nagy I, Bálint B, Vásárhelyi BM, Bihari P, Számel M, Balogh D, Papp H, Kalapis D, Papp B, Pál C. 2018. Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance. Proc Natl Acad Sci U S A 115: E5726-E5735.
doi: 10.1073/pnas.1801646115 PMID:29871954
Bakke MJ, Agusti C, Bruusgaard JC, Sundaram AYM, Horsberg TE. 2018. Deltamethrin resistance in the salmon louse, Lepeophtheirus salmonis (Krøyer): Maternal inheritance and reduced apoptosis. Sci Rep 8: 8450.
doi: 10.1038/s41598-018-26420-6 PMID:29855496
Ajayi C, Åberg E, Askarian F, Sollid JUE, Johannessen M, Hanssen AM. 2018. Genetic variability in the sdrD gene in Staphylococcus aureus from healthy nasal carriers. BMC Microbiol 18: 34.
doi: 10.1186/s12866-018-1179-7 PMID:29661152
Wang Y, Lysøe E, Armarego-Marriott T, Erban A, Paruch L, van Eerde A, Bock R, Liu-Clarke J. 2018. Transcriptome and metabolome analyses provide insights into root and root-released organic anion responses to phosphorus deficiency in oat. J Exp Bot 69: 3759-3771.
doi: 10.1093/jxb/ery176 PMID:29757407
Lee S, Norheim F, Gulseth HL, Langleite TM, Aker A, Gundersen TE, Holen T, Birkeland KI, Drevon CA. 2018. Skeletal muscle phosphatidylcholine and phosphatidylethanolamine respond to exercise and influence insulin sensitivity in men. Sci Rep 8: 6531.
doi: 10.1038/s41598-018-24976-x PMID:29695812
Holm KO, Bækkedal C, Söderberg JJ, Haugen P. 2018. Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing. Genome Biol Evol 10: 1127-1131.
doi: 10.1093/gbe/evy074 PMID:29635365
Lewandowska-Sabat AM, Hansen SF, Solberg TR, Østerås O, Heringstad B, Boysen P, Olsaker I. 2018. MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae. BMC Genomics 19: 241.
doi: 10.1186/s12864-018-4591-3 PMID:29636015
Tørresen OK, Brieuc MSO, Solbakken MH, Sørhus E, Nederbragt AJ, Jakobsen KS, Meier S, Edvardsen RB, Jentoft S. 2018. Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats. BMC Genomics 19: 240.
doi: 10.1186/s12864-018-4616-y PMID:29636006
Bagi A, Riiser ES, Molland HS, Star B, Haverkamp THA, Sydnes MO, Pampanin DM. 2018. Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil. BMC Microbiol 18: 25.
doi: 10.1186/s12866-018-1171-2 PMID:29609542
Segorbe D, Wilkinson D, Mizeranschi A, Hughes T, Aaløkken R, Váchová L, Palková Z, Gilfillan GD. 2018. An optimized FAIRE procedure for low cell numbers in yeast. Yeast 35: 507-512.
doi: 10.1002/yea.3316 PMID:29577419
Eggestøl HØ, Lunde HS, Rønneseth A, Fredman D, Petersen K, Mishra CK, Furmanek T, Colquhoun DJ, Wergeland HI, Haugland GT. 2018. Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure. Sci Rep 8: 5261.
doi: 10.1038/s41598-018-23667-x PMID:29588496
Pedersen T, Sekyere JO, Govinden U, Moodley K, Sivertsen A, Samuelsen Ø, Essack SY, Sundsfjord A. 2018. Spread of Plasmid-Encoded NDM-1 and GES-5 Carbapenemases among Extensively Drug-Resistant and Pandrug-Resistant Clinical Enterobacteriaceae in Durban, South Africa. Antimicrob Agents Chemother 62.
doi: 10.1128/AAC.02178-17 PMID:29507063
Lie KK, Tørresen OK, Solbakken MH, Rønnestad I, Tooming-Klunderud A, Nederbragt AJ, Jentoft S, Sæle Ø. 2018. Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics 19: 186.
doi: 10.1186/s12864-018-4570-8 PMID:29510660
Kotlarz D, Marquardt B, Barøy T, Lee WS, Konnikova L, Hollizeck S, Magg T, Lehle AS, Walz C, Borggraefe I, Hauck F, Bufler P, Conca R, Wall SM, Schumacher EM, Misceo D, Frengen E, Bentsen BS, Uhlig HH, Hopfner KP, Muise AM, Snapper SB, Strømme P, Klein C. 2018. Human TGF-β1 deficiency causes severe inflammatory bowel disease and encephalopathy. Nat Genet 50: 344-348.
doi: 10.1038/s41588-018-0063-6 PMID:29483653
Lingaas F, Guttersrud OA, Arnet E, Espenes A. 2018. Neuronal ceroid lipofuscinosis in Salukis is caused by a single base pair insertion in CLN8. Anim Genet 49: 52-58.
doi: 10.1111/age.12629 PMID:29446145
Fagerlund A, Langsrud S, Moen B, Heir E, Møretrø T. 2018. Complete Genome Sequences of Six Listeria monocytogenes Sequence Type 9 Isolates from Meat Processing Plants in Norway. Genome Announc 6.
doi: 10.1128/genomeA.00016-18 PMID:29449378
Knutsen TM, Olsen HG, Tafintseva V, Svendsen M, Kohler A, Kent MP, Lien S. 2018. Unravelling genetic variation underlying de novo-synthesis of bovine milk fatty acids. Sci Rep 8: 2179.
doi: 10.1038/s41598-018-20476-0 PMID:29391528
Manousaki T, Tsakogiannis A, Lagnel J, Kyriakis D, Duncan N, Estevez A, Tsigenopoulos CS. 2018. Muscle and liver transcriptome characterization and genetic marker discovery in the farmed meagre, Argyrosomus regius. Mar Genomics 39: 39-44.
doi: 10.1016/j.margen.2018.01.002 PMID:29395623
Eichner C, Dondrup M, Nilsen F. 2018. RNA sequencing reveals distinct gene expression patterns during the development of parasitic larval stages of the salmon louse (Lepeophtheirus salmonis). J Fish Dis 41: 1005-1029.
doi: 10.1111/jfd.12770 PMID:29368347
Olsen-Bergem H, Kristoffersen AK, Bjørnland T, Aas JA. 2018. Is it possible to contaminate the temporomandibular joint by arthrocentesis?. Oral Surg 11: 183-8.
doi: 10.1111/ors.12331
Vader A, Laughinghouse HD 4th, Griffiths C, Jakobsen KS, Gabrielsen TM. 2018. Proton-pumping rhodopsins are abundantly expressed by microbial eukaryotes in a high-Arctic fjord. Environ Microbiol 20: 890-902.
doi: 10.1111/1462-2920.14035 PMID:29266690
Trosvik P, Rueness EK, de Muinck EJ, Moges A, Mekonnen A. 2018. Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys. Sci Rep 8: 20.
doi: 10.1038/s41598-017-18435-2 PMID:29311667
Rekdal SL, Anmarkrud JA, Johnsen A, Lifjeld JT. 2018. Genotyping strategy matters when analyzing hypervariable major histocompatibility complex-Experience from a passerine bird. Ecol Evol 8: 1680-1692.
doi: 10.1002/ece3.3757 PMID:29435243
Fehlmann T, Backes C, Alles J, Fischer U, Hart M, Kern F, Langseth H, Rounge T, Umu SU, Kahraman M, Laufer T, Haas J, Staehler C, Ludwig N, Hübenthal M, Meder B, Franke A, Lenhof HP, Meese E, Keller A. 2018. A high-resolution map of the human small non-coding transcriptome. Bioinformatics 34: 1621-1628.
doi: 10.1093/bioinformatics/btx814 PMID:29281000
Baalsrud HT, Tørresen OK, Solbakken MH, Salzburger W, Hanel R, Jakobsen KS, Jentoft S. 2018. De Novo Gene Evolution of Antifreeze Glycoproteins in Codfishes Revealed by Whole Genome Sequence Data. Mol Biol Evol 35: 593-606.
doi: 10.1093/molbev/msx311 PMID:29216381
Ketto IA, Øyaas J, Ådnøy T, Johansen AG, Schüller RB, Narvhus J, Skeie SB. 2018. The influence of milk protein genetic polymorphism on the physical properties of cultured milk. International Dairy Journal 78: 130-7.
doi: 10.1016/j.idairyj.2017.11.009
2017
Bujko A, Atlasy N, Landsverk OJB, Richter L, Yaqub S, Horneland R, Øyen O, Aandahl EM, Aabakken L, Stunnenberg HG, Bækkevold ES, Jahnsen FL. 2018. Transcriptional and functional profiling defines human small intestinal macrophage subsets. J Exp Med 215: 441-458.
doi: 10.1084/jem.20170057 PMID:29273642
Paulsen ML, Nielsen SE, Müller O, Møller EF, Stedmon CA, Juul-Pedersen T, Markager S, Sejr MK, Delgado Huertas A, Larsen A, Middelboe M. 2017. Carbon Bioavailability in a High Arctic Fjord Influenced by Glacial Meltwater, NE Greenland. Front Mar Sci 4.
doi: 10.3389/fmars.2017.00176
Khan R, Junges R, Åmdal HA, Chen T, Morrison DA, Petersen FC. 2017. A positive feedback loop mediated by Sigma X enhances expression of the streptococcal regulator ComR. Sci Rep 7: 5984.
doi: 10.1038/s41598-017-04768-5 PMID:28729683
Lesaulnier CC, Herbold CW, Pelikan C, Berry D, Gérard C, Le Coz X, Gagnot S, Niggemann J, Dittmar T, Singer GA, Loy A. 2017. Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters. Microbiome 5: 126.
doi: 10.1186/s40168-017-0344-9 PMID:28938908
Barth JMI, Damerau M, Matschiner M, Jentoft S, Hanel R. 2017. Genomic Differentiation and Demographic Histories of Atlantic and Indo-Pacific Yellowfin Tuna (Thunnus albacares) Populations. Genome Biol Evol 9: 1084-1098.
doi: 10.1093/gbe/evx067 PMID:28419285
Iversen R, Snir O, Stensland M, Kroll JE, Steinsbø Ø, Korponay-Szabó IR, Lundin KEA, de Souza GA, Sollid LM. 2017. Strong Clonal Relatedness between Serum and Gut IgA despite Different Plasma Cell Origins. Cell Rep 20: 2357-2367.
doi: 10.1016/j.celrep.2017.08.036 PMID:28877470
Panagopoulos I, Gorunova L, Brunetti M, Agostini A, Andersen HK, Lobmaier I, Bjerkehagen B, Heim S. 2017. Genetic heterogeneity in leiomyomas of deep soft tissue. Oncotarget 8: 48769-48781.
doi: 10.18632/oncotarget.17953 PMID:28591699
Baalsrud HT, Voje KL, Tørresen OK, Solbakken MH, Matschiner M, Malmstrøm M, Hanel R, Salzburger W, Jakobsen KS, Jentoft S. 2017. Evolution of Hemoglobin Genes in Codfishes Influenced by Ocean Depth. Sci Rep 7: 7956.
doi: 10.1038/s41598-017-08286-2 PMID:28801564
Orr RJS, Rombauts S, Van de Peer Y, Shalchian-Tabrizi K. 2017. Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples. Genome Announc 5.
doi: 10.1128/genomeA.00894-17 PMID:28839038
Tronstad RR, Kummen M, Holm K, von Volkmann HL, Anmarkrud JA, Høivik ML, Moum B, Gilja OH, Hausken T, Baines J, Karlsen TH, Fiskerstrand T, Hov JR. 2017. Guanylate Cyclase C Activation Shapes the Intestinal Microbiota in Patients with Familial Diarrhea and Increased Susceptibility for Crohn's Disease. Inflamm Bowel Dis 23: 1752-1761.
doi: 10.1097/MIB.0000000000001264 PMID:28902124
Rydning SL, Backe PH, Sousa MML, Iqbal Z, Øye AM, Sheng Y, Yang M, Lin X, Slupphaug G, Nordenmark TH, Vigeland MD, Bjørås M, Tallaksen CM, Selmer KK. 2017. Novel UCHL1 mutations reveal new insights into ubiquitin processing. Hum Mol Genet 26: 1031-1040.
doi: 10.1093/hmg/ddw391 PMID:28007905
Bjørgo K, Fjær R, Mørk HH, Ferdinandusse S, Falkenberg KD, Waterham HR, Øye AM, Sikiric A, Amundsen SS, Kulseth MA, Selmer K. 2017. Biochemical and genetic characterization of an unusual mild PEX3-related Zellweger spectrum disorder. Mol Genet Metab 121: 325-328.
doi: 10.1016/j.ymgme.2017.06.004 PMID:28673549
Low KJ, Ansari M, Abou Jamra R, Clarke A, El Chehadeh S, FitzPatrick DR, Greenslade M, Henderson A, Hurst J, Keller K, Kuentz P, Prescott T, Roessler F, Selmer KK, Schneider MC, Stewart F, Tatton-Brown K, Thevenon J, Vigeland MD, Vogt J, Willems M, Zonana J, Study DD, Smithson SF. 2017. PUF60 variants cause a syndrome of ID, short stature, microcephaly, coloboma, craniofacial, cardiac, renal and spinal features. Eur J Hum Genet 25: 552-559.
doi: 10.1038/ejhg.2017.27 PMID:28327570
Mero IL, Mørk HH, Sheng Y, Blomhoff A, Opheim GL, Erichsen A, Vigeland MD, Selmer KK. 2017. Homozygous KIDINS220 loss-of-function variants in fetuses with cerebral ventriculomegaly and limb contractures. Hum Mol Genet 26: 3792-3796.
doi: 10.1093/hmg/ddx263 PMID:28934391
Lanzén A, Lekang K, Jonassen I, Thompson EM, Troedsson C. 2017. DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments. PLoS One 12: e0179443.
doi: 10.1371/journal.pone.0179443 PMID:28622351
Boumans L, Hogner S, Brittain J, Johnsen A. 2017. Ecological speciation by temporal isolation in a population of the stonefly Leuctra hippopus (Plecoptera, Leuctridae). Ecol Evol 7: 1635-1649.
doi: 10.1002/ece3.2638 PMID:28261472
Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp THA. 2017. Temporal dynamics in microbial soil communities at anthrax carcass sites. BMC Microbiol 17: 206.
doi: 10.1186/s12866-017-1111-6 PMID:28950879
Vander Roost J, Thorseth IH, Dahle H. 2017. Microbial analysis of Zetaproteobacteria and co-colonizers of iron mats in the Troll Wall Vent Field, Arctic Mid-Ocean Ridge. PLoS One 12: e0185008.
doi: 10.1371/journal.pone.0185008 PMID:28931087
Lekva T, Roland MCP, Michelsen AE, Friis CM, Aukrust P, Bollerslev J, Henriksen T, Ueland T. 2017. Large Reduction in Adiponectin During Pregnancy Is Associated With Large-for-Gestational-Age Newborns. J Clin Endocrinol Metab 102: 2552-2559.
doi: 10.1210/jc.2017-00289 PMID:28460045
Dunne KA, Chaudhuri RR, Rossiter AE, Beriotto I, Browning DF, Squire D, Cunningham AF, Cole JA, Loman N, Henderson IR. 2017. Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain. Microb Genom 3: mgen000106.
doi: 10.1099/mgen.0.000106 PMID:28663823
Ansar M, Riazuddin S, Sarwar MT, Makrythanasis P, Paracha SA, Iqbal Z, Khan J, Assir MZ, Hussain M, Razzaq A, Polla DL, Taj AS, Holmgren A, Batool N, Misceo D, Iwaszkiewicz J, de Brouwer APM, Guipponi M, Hanquinet S, Zoete V, Santoni FA, Frengen E, Ahmed J, Riazuddin S, van Bokhoven H, Antonarakis SE. 2018. Biallelic variants in LINGO1 are associated with autosomal recessive intellectual disability, microcephaly, speech and motor delay. Genet Med 20: 778-784.
doi: 10.1038/gim.2017.113 PMID:28837161
Roy B, Neumann RS, Snir O, Iversen R, Sandve GK, Lundin KEA, Sollid LM. 2017. High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease. J Immunol 199: 782-791.
doi: 10.4049/jimmunol.1700169 PMID:28600290
Berg PR, Star B, Pampoulie C, Bradbury IR, Bentzen P, Hutchings JA, Jentoft S, Jakobsen KS. 2017. Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions. Heredity (Edinb) 119: 418-428.
doi: 10.1038/hdy.2017.54 PMID:28930288
Pettersson JH, Shi M, Bohlin J, Eldholm V, Brynildsrud OB, Paulsen KM, Andreassen Å, Holmes EC. 2017. Characterizing the virome of Ixodes ricinus ticks from northern Europe. Sci Rep 7: 10870.
doi: 10.1038/s41598-017-11439-y PMID:28883464
Sørhus E, Incardona JP, Furmanek T, Goetz GW, Scholz NL, Meier S, Edvardsen RB, Jentoft S. 2017. Novel adverse outcome pathways revealed by chemical genetics in a developing marine fish. Elife 6.
doi: 10.7554/eLife.20707 PMID:28117666
Berge-Seidl V, Pihlstrøm L, Maple-Grødem J, Forsgren L, Linder J, Larsen JP, Tysnes OB, Toft M. 2017. The GBA variant E326K is associated with Parkinson's disease and explains a genome-wide association signal. Neurosci Lett 658: 48-52.
doi: 10.1016/j.neulet.2017.08.040 PMID:28830825
Brandrud MK, Paun O, Lorenzo MT, Nordal I, Brysting AK. 2017. RADseq provides evidence for parallel ecotypic divergence in the autotetraploid Cochlearia officinalis in Northern Norway. Sci Rep 7: 5573.
doi: 10.1038/s41598-017-05794-z PMID:28717144
Acuña SM, Aoki JI, Laranjeira-Silva MF, Zampieri RA, Fernandes JCR, Muxel SM, Floeter-Winter LM. 2017. Arginase expression modulates nitric oxide production in Leishmania (Leishmania) amazonensis. PLoS One 12: e0187186.
doi: 10.1371/journal.pone.0187186 PMID:29135983
Aoki JI, Muxel SM, Zampieri RA, Laranjeira-Silva MF, Müller KE, Nerland AH, Floeter-Winter LM. 2017. RNA-seq transcriptional profiling of Leishmania amazonensis reveals an arginase-dependent gene expression regulation. PLoS Negl Trop Dis 11: e0006026.
doi: 10.1371/journal.pntd.0006026 PMID:29077741
Umu SU, Langseth H, Bucher-Johannessen C, Fromm B, Keller A, Meese E, Lauritzen M, Leithaug M, Lyle R, Rounge TB. 2018. A comprehensive profile of circulating RNAs in human serum. RNA Biol 15: 242-250.
doi: 10.1080/15476286.2017.1403003 PMID:29219730
de Muinck EJ, Lundin KEA, Trosvik P. 2017. Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota. mSystems 2.
doi: 10.1128/mSystems.00086-17 PMID:28904999
Margos G, Hepner S, Mang C, Marosevic D, Reynolds SE, Krebs S, Sing A, Derdakova M, Reiter MA, Fingerle V. 2017. Lost in plasmids: next generation sequencing and the complex genome of the tick-borne pathogen Borrelia burgdorferi. BMC Genomics 18: 422.
doi: 10.1186/s12864-017-3804-5 PMID:28558786
Ekblad B, Nissen-Meyer J, Kristensen T. 2017. Whole-genome sequencing of mutants with increased resistance against the two-peptide bacteriocin plantaricin JK reveals a putative receptor and potential docking site. PLoS One 12: e0185279.
doi: 10.1371/journal.pone.0185279 PMID:28931059
Reynolds HT, Slot JC, Divon HH, Lysøe E, Proctor RH, Brown DW. 2017. Differential Retention of Gene Functions in a Secondary Metabolite Cluster. Mol Biol Evol 34: 2002-2015.
doi: 10.1093/molbev/msx145 PMID:28460114
Lysøe E, Dees MW, Brurberg MB. 2017. A Three-Way Transcriptomic Interaction Study of a Biocontrol Agent (Clonostachys rosea), a Fungal Pathogen (Helminthosporium solani), and a Potato Host (Solanum tuberosum). Mol Plant Microbe Interact 30: 646-655.
doi: 10.1094/MPMI-03-17-0062-R PMID:28585451
Dees MW, Lysøe E, Rossmann S, Perminow J, Brurberg MB. 2017. Pectobacterium polaris sp. nov., isolated from potato (Solanum tuberosum). Int J Syst Evol Microbiol 67: 5222-5229.
doi: 10.1099/ijsem.0.002448 PMID:29068285
Maršíková J, Wilkinson D, Hlaváček O, Gilfillan GD, Mizeranschi A, Hughes T, Begany M, Rešetárová S, Váchová L, Palková Z. 2017. Metabolic differentiation of surface and invasive cells of yeast colony biofilms revealed by gene expression profiling. BMC Genomics 18: 814.
doi: 10.1186/s12864-017-4214-4 PMID:29061122
González-de la Fuente S, Peiró-Pastor R, Rastrojo A, Moreno J, Carrasco-Ramiro F, Requena JM, Aguado B. 2017. Resequencing of the Leishmania infantum (strain JPCM5) genome and de novo assembly into 36 contigs. Sci Rep 7: 18050.
doi: 10.1038/s41598-017-18374-y PMID:29273719
Falch CM, Sundaram AYM, Øystese KA, Normann KR, Lekva T, Silamikelis I, Eieland AK, Andersen M, Bollerslev J, Olarescu NC. 2018. Gene expression profiling of fast- and slow-growing non-functioning gonadotroph pituitary adenomas. Eur J Endocrinol 178: 295-307.
doi: 10.1530/EJE-17-0702 PMID:29259037
van Son M, Tremoen NH, Gaustad AH, Myromslien FD, Våge DI, Stenseth EB, Zeremichael TT, Grindflek E. 2017. RNA sequencing reveals candidate genes and polymorphisms related to sperm DNA integrity in testis tissue from boars. BMC Vet Res 13: 362.
doi: 10.1186/s12917-017-1279-x PMID:29183316
Pettersen VK, Steinsland H, Wiker HG. 2018. Comparative Proteomics of Enterotoxigenic Escherichia coli Reveals Differences in Surface Protein Production and Similarities in Metabolism. J Proteome Res 17: 325-336.
doi: 10.1021/acs.jproteome.7b00593 PMID:29185342
Sarropoulou E, Sundaram AYM, Kaitetzidou E, Kotoulas G, Gilfillan GD, Papandroulakis N, Mylonas CC, Magoulas A. 2017. Full genome survey and dynamics of gene expression in the greater amberjack Seriola dumerili. Gigascience 6: 1-13.
doi: 10.1093/gigascience/gix108 PMID:29126158
de Muinck EJ, Trosvik P, Gilfillan GD, Hov JR, Sundaram AYM. 2017. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform. Microbiome 5: 68.
doi: 10.1186/s40168-017-0279-1 PMID:28683838
Nordgård ASR, Bergland WH, Vadstein O, Mironov V, Bakke R, Østgaard K, Bakke I. 2017. Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaea. Sci Rep 7: 15077.
doi: 10.1038/s41598-017-14527-1 PMID:29118356
McLeod A, Mosleth EF, Rud I, Branco Dos Santos F, Snipen L, Liland KH, Axelsson L. 2017. Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome. PLoS One 12: e0187542.
doi: 10.1371/journal.pone.0187542 PMID:29099858
Panagopoulos I, Gorunova L, Torkildsen S, Tjønnfjord GE, Micci F, Heim S. 2017. DEK-NUP214-Fusion Identified by RNA-Sequencing of an Acute Myeloid Leukemia with t(9;12)(q34;q15). Cancer Genomics Proteomics 14: 437-443.
doi: 10.21873/cgp.20053 PMID:29109093
Lefevre S, Stecyk JAW, Torp MK, Løvold LY, Sørensen C, Johansen IB, Stensløkken KO, Couturier CS, Sloman KA, Nilsson GE. 2017. Re-oxygenation after anoxia induces brain cell death and memory loss in the anoxia-tolerant crucian carp. J Exp Biol 220: 3883-3895.
doi: 10.1242/jeb.165118 PMID:29093186
Aoki JI, Muxel SM, Zampieri RA, Acuña SM, Fernandes JCR, Vanderlinde RH, Sales MCOP, Floeter-Winter LM. 2017. L-arginine availability and arginase activity: Characterization of amino acid permease 3 in Leishmania amazonensis. PLoS Negl Trop Dis 11: e0006025.
doi: 10.1371/journal.pntd.0006025 PMID:29073150
Popperud TH, Viken MK, Kerty E, Lie BA. 2017. Juvenile myasthenia gravis in Norway: HLA-DRB1*04:04 is positively associated with prepubertal onset. PLoS One 12: e0186383.
doi: 10.1371/journal.pone.0186383 PMID:29036181
Skaftnesmo KO, Edvardsen RB, Furmanek T, Crespo D, Andersson E, Kleppe L, Taranger GL, Bogerd J, Schulz RW, Wargelius A. 2017. Integrative testis transcriptome analysis reveals differentially expressed miRNAs and their mRNA targets during early puberty in Atlantic salmon. BMC Genomics 18: 801.
doi: 10.1186/s12864-017-4205-5 PMID:29047327
Tedersoo L, Tooming-Klunderud A, Anslan S. 2018. PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives. New Phytol 217: 1370-1385.
doi: 10.1111/nph.14776 PMID:28906012
de Welzen L, Eldholm V, Maharaj K, Manson AL, Earl AM, Pym AS. 2017. Whole-Transcriptome and -Genome Analysis of Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolates Identifies Downregulation of ethA as a Mechanism of Ethionamide Resistance. Antimicrob Agents Chemother 61.
doi: 10.1128/AAC.01461-17 PMID:28993337
Samuelsen Ø, Hansen F, Aasnæs B, Hasman H, Lund BA, Leiros HS, Lilje B, Janice J, Jakobsen L, Littauer P, Søes LM, Holzknecht BJ, Andersen LP, Stegger M, Andersen PS, Hammerum AM. 2018. Dissemination and Characteristics of a Novel Plasmid-Encoded Carbapenem-Hydrolyzing Class D β-Lactamase, OXA-436, Found in Isolates from Four Patients at Six Different Hospitals in Denmark. Antimicrob Agents Chemother 62.
doi: 10.1128/AAC.01260-17 PMID:29061750
Snir O, Chen X, Gidoni M, du Pré MF, Zhao Y, Steinsbø Ø, Lundin KE, Yaari G, Sollid LM. 2017. Stereotyped antibody responses target posttranslationally modified gluten in celiac disease. JCI Insight 2.
doi: 10.1172/jci.insight.93961 PMID:28878138
Wrobel A, Ottoni C, Leo JC, Gulla S, Linke D. 2018. The repeat structure of two paralogous genes, Yersinia ruckeri invasin (yrInv) and a "Y. ruckeri invasin-like molecule", (yrIlm) sheds light on the evolution of adhesive capacities of a fish pathogen. J Struct Biol 201: 171-183.
doi: 10.1016/j.jsb.2017.08.008 PMID:28888816
Junges R, Salvadori G, Shekhar S, Åmdal HA, Periselneris JN, Chen T, Brown JS, Petersen FC. 2017. A Quorum-Sensing System That Regulates Streptococcus pneumoniae Biofilm Formation and Surface Polysaccharide Production. mSphere 2: e00324-17.
doi: 10.1128/mSphere.00324-17 PMID:28932816
Orr RJS, Rombauts S, Van de Peer Y, Shalchian-Tabrizi K. 2017. Draft Genome Sequences of Two Unclassified Chitinophagaceae Bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples. Genome Announc 5.
doi: 10.1128/genomeA.00787-17 PMID:28818898
Orr RJS, Rombauts S, Van de Peer Y, Shalchian-Tabrizi K. 2017. Draft Genome Sequences of Two Unclassified Bacteria, Hydrogenophaga sp. Strains IBVHS1 and IBVHS2, Isolated from Environmental Samples. Genome Announc 5.
doi: 10.1128/genomeA.00884-17 PMID:28839037
Star B, Boessenkool S, Gondek AT, Nikulina EA, Hufthammer AK, Pampoulie C, Knutsen H, André C, Nistelberger HM, Dierking J, Petereit C, Heinrich D, Jakobsen KS, Stenseth NC, Jentoft S, Barrett JH. 2017. Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany. Proc Natl Acad Sci U S A 114: 9152-9157.
doi: 10.1073/pnas.1710186114 PMID:28784790
Micci F, Brunetti M, Dal Cin P, Nucci MR, Gorunova L, Heim S, Panagopoulos I. 2017. Fusion of the genes BRD8 and PHF1 in endometrial stromal sarcoma. Genes Chromosomes Cancer 56: 841-845.
doi: 10.1002/gcc.22485 PMID:28758277
Margos G, Hepner S, Mang C, Sing A, Liebl B, Fingerle V. 2017. Completed Genome Sequences of Borrelia burgdorferi Sensu Stricto B31(NRZ) and Closely Related Patient Isolates from Europe. Genome Announc 5.
doi: 10.1128/genomeA.00637-17 PMID:28705983
Thode SK, Bækkedal C, Söderberg JJ, Hjerde E, Hansen H, Haugen P. 2017. Construction of a fur null mutant and RNA-sequencing provide deeper global understanding of the Aliivibrio salmonicida Fur regulon. PeerJ 5: e3461.
doi: 10.7717/peerj.3461 PMID:28717590
Osei Sekyere J, Amoako DG. 2017. Genomic and phenotypic characterisation of fluoroquinolone resistance mechanisms in Enterobacteriaceae in Durban, South Africa. PLoS One 12: e0178888.
doi: 10.1371/journal.pone.0178888 PMID:28636609
Barth JMI, Berg PR, Jonsson PR, Bonanomi S, Corell H, Hemmer-Hansen J, Jakobsen KS, Johannesson K, Jorde PE, Knutsen H, Moksnes PO, Star B, Stenseth NC, Svedäng H, Jentoft S, André C. 2017. Genome architecture enables local adaptation of Atlantic cod despite high connectivity. Mol Ecol 26: 4452-4466.
doi: 10.1111/mec.14207 PMID:28626905
Elgvin TO, Trier CN, Tørresen OK, Hagen IJ, Lien S, Nederbragt AJ, Ravinet M, Jensen H, Sætre GP. 2017. The genomic mosaicism of hybrid speciation. Sci Adv 3: e1602996.
doi: 10.1126/sciadv.1602996 PMID:28630911
Heikal A, Samuelsen Ø, Kristensen T, Økstad OA. 2017. Complete Genome Sequence of a Multidrug-Resistant, blaNDM-1-Expressing Klebsiella pneumoniae K66-45 Clinical Isolate from Norway. Genome Announc 5.
doi: 10.1128/genomeA.00601-17 PMID:28684580
Egger B, Bachmann L, Fromm B. 2017. Atp8 is in the ground pattern of flatworm mitochondrial genomes. BMC Genomics 18: 414.
doi: 10.1186/s12864-017-3807-2 PMID:28549457
Freeman MA, Fuss J, Kristmundsson Á, Bjorbækmo MFM, Mangot JF, Del Campo J, Keeling PJ, Shalchian-Tabrizi K, Bass D. 2017. X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates. Curr Biol 27: 1645-1651.e3.
doi: 10.1016/j.cub.2017.04.045 PMID:28528902
Panagopoulos I, Gorunova L, Lobmaier I, Bjerkehagen B, Heim S. 2017. Identification of SETD2-NF1 fusion gene in a pediatric spindle cell tumor with the chromosomal translocation t(3;17)(p21;q12). Oncol Rep 37: 3181-3188.
doi: 10.3892/or.2017.5628 PMID:28498454
Irene Roalkvam, Karine Drønen. 2017. Two Case Studies of Corrosion from an Injection Water Pipeline in the North Sea. Microbiologically Influenced Corrosion in the Upstream Oil and Gas Industry.
doi: 10.1201/9781315157818-21
Fuglerud BM, Lemma RB, Wanichawan P, Sundaram AYM, Eskeland R, Gabrielsen OS. 2017. A c-Myb mutant causes deregulated differentiation due to impaired histone binding and abrogated pioneer factor function. Nucleic Acids Res 45: 7681-7696.
doi: 10.1093/nar/gkx364 PMID:28472346
Leandro T, da Costa MS, Sanz JL, Amils R. 2017. Complete Genome Sequence of Tessaracoccus sp. Strain T2.5-30 Isolated from 139.5 Meters Deep on the Subsurface of the Iberian Pyritic Belt. Genome Announc 5.
doi: 10.1128/genomeA.00238-17 PMID:28450513
Székely AJ, Langenheder S. 2017. Dispersal timing and drought history influence the response of bacterioplankton to drying-rewetting stress. ISME J 11: 1764-1776.
doi: 10.1038/ismej.2017.55 PMID:28440801
Holm I, Spildrejorde M, Stadheim B, Eiklid KL, Samarakoon PS. 2017. Whole exome sequencing of sporadic patients with Currarino Syndrome: A report of three trios. Gene 624: 50-55.
doi: 10.1016/j.gene.2017.04.030 PMID:28456592
Khomich M, Davey ML, Kauserud H, Rasconi S, Andersen T. 2017. Fungal communities in Scandinavian lakes along a longitudinal gradient. Fungal Ecology 27: 36-46.
doi: 10.1016/j.funeco.2017.01.008
Wilson B, Müller O, Nordmann EL, Seuthe L, Bratbak G, Øvreås L. 2017. Changes in Marine Prokaryote Composition with Season and Depth Over an Arctic Polar Year. Front Mar Sci 4.
doi: 10.3389/fmars.2017.00095
Iqbal Z, Rydning SL, Wedding IM, Koht J, Pihlstrøm L, Rengmark AH, Henriksen SP, Tallaksen CM, Toft M. 2017. Targeted high throughput sequencing in hereditary ataxia and spastic paraplegia. PLoS One 12: e0174667.
doi: 10.1371/journal.pone.0174667 PMID:28362824
Kovi MR, Amdahl H, Alsheikh M, Rognli OA. 2017. De novo and reference transcriptome assembly of transcripts expressed during flowering provide insight into seed setting in tetraploid red clover. Sci Rep 7: 44383.
doi: 10.1038/srep44383 PMID:28287176
Lee S, Norheim F, Gulseth HL, Langleite TM, Kolnes KJ, Tangen DS, Stadheim HK, Gilfillan GD, Holen T, Birkeland KI, Jensen J, Drevon CA. 2017. Interaction between plasma fetuin-A and free fatty acids predicts changes in insulin sensitivity in response to long-term exercise. Physiol Rep 5.
doi: 10.14814/phy2.13183 PMID:28270597
Gonzalez-Silva BM, Rønning AJ, Andreassen IK, Bakke I, Cervantes FJ, Østgaard K, Vadstein O. 2017. Changes in the microbial community of an anammox consortium during adaptation to marine conditions revealed by 454 pyrosequencing. Appl Microbiol Biotechnol.
doi: 10.1007/s00253-017-8160-5 PMID:28280868
Olsen LC, O'Reilly KC, Liabakk NB, Witter MP, Sætrom P. 2017. MicroRNAs contribute to postnatal development of laminar differences and neuronal subtypes in the rat medial entorhinal cortex. Brain Struct Funct.
doi: 10.1007/s00429-017-1389-z PMID:28260163
Sundaram A, Tengs T, Grimholt U. 2017. Issues with RNA-seq analysis in non-model organisms: A salmonid example. Dev Comp Immunol 75: 38-47.
doi: 10.1016/j.dci.2017.02.006 PMID:28223254
Osei Sekyere J, Amoako DG. 2017. Carbonyl Cyanide m-Chlorophenylhydrazine (CCCP) Reverses Resistance to Colistin, but Not to Carbapenems and Tigecycline in Multidrug-Resistant Enterobacteriaceae. Front Microbiol 8: 228.
doi: 10.3389/fmicb.2017.00228 PMID:28261184
Panagopoulos I, Gorunova L, Torkildsen S, Tierens A, Heim S, Micci F. 2017. FAM53B truncation caused by t(10;19)(q26;q13) chromosome translocation in acute lymphoblastic leukemia. Oncol Lett 13: 2216-2220.
doi: 10.3892/ol.2017.5705 PMID:28454383
Brunetti M, Agostini A, Davidson B, Tropé CG, Heim S, Panagopoulos I, Micci F. 2017. Recurrent fusion transcripts in squamous cell carcinomas of the vulva. Oncotarget 8: 16843-16850.
doi: 10.18632/oncotarget.15167 PMID:28186972
Torkildsen S, Brunetti M, Gorunova L, Spetalen S, Beiske K, Heim S, Panagopoulos I. 2017. Rearrangement of the Chromatin Organizer Special AT-rich Binding Protein 1 Gene, SATB1, Resulting from a t(3;5)(p24;q14) Chromosomal Translocation in Acute Myeloid Leukemia. Anticancer Res 37: 693-698.
doi: 10.21873/anticanres.11365 PMID:28179318
van der Helm E, Imamovic L, Hashim Ellabaan MM, van Schaik W, Koza A, Sommer MOA. 2017. Rapid resistome mapping using nanopore sequencing. Nucleic Acids Res 45: e61.
doi: 10.1093/nar/gkw1328 PMID:28062856
Davey ML, Skogen MJ, Heegaard E, Halvorsen R, Kauserud H, Ohlson M. 2017. Host and tissue variations overshadow the response of boreal moss-associated fungal communities to increased nitrogen load. Mol Ecol 26: 571-588.
doi: 10.1111/mec.13938 PMID:27882647
Gran-Stadniczeñko S, Šupraha L, Egge ED, Edvardsen B. 2017. Haptophyte Diversity and Vertical Distribution Explored by 18S and 28S Ribosomal RNA Gene Metabarcoding and Scanning Electron Microscopy. J Eukaryot Microbiol 64: 514-532.
doi: 10.1111/jeu.12388 PMID:27973742
Tuveng TR, Hagen LH, Mekasha S, Frank J, Arntzen MØ, Vaaje-Kolstad G, Eijsink VG. 2017. Genomic, proteomic and biochemical analysis of the chitinolytic machinery of Serratia marcescens BJL200. Biochim Biophys Acta 1865: 414-421.
doi: 10.1016/j.bbapap.2017.01.007 PMID:28130068
Landsverk OJ, Snir O, Casado RB, Richter L, Mold JE, Réu P, Horneland R, Paulsen V, Yaqub S, Aandahl EM, Øyen OM, Thorarensen HS, Salehpour M, Possnert G, Frisén J, Sollid LM, Baekkevold ES, Jahnsen FL. 2017. Antibody-secreting plasma cells persist for decades in human intestine. J Exp Med 214: 309-317.
doi: 10.1084/jem.20161590 PMID:28104812
Malmstrøm M, Matschiner M, Tørresen OK, Jakobsen KS, Jentoft S. 2017. Whole genome sequencing data and de novo draft assemblies for 66 teleost species. Sci Data 4: 160132.
doi: 10.1038/sdata.2016.132 PMID:28094797
Tørresen OK, Star B, Jentoft S, Reinar WB, Grove H, Miller JR, Walenz BP, Knight J, Ekholm JM, Peluso P, Edvardsen RB, Tooming-Klunderud A, Skage M, Lien S, Jakobsen KS, Nederbragt AJ. 2017. An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics 18: 95.
doi: 10.1186/s12864-016-3448-x PMID:28100185
Malde K, Seliussen BB, Quintela M, Dahle G, Besnier F, Skaug HJ, Øien N, Solvang HK, Haug T, Skern-Mauritzen R, Kanda N, Pastene LA, Jonassen I, Glover KA. 2017. Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species. BMC Genomics 18: 76.
doi: 10.1186/s12864-016-3416-5 PMID:28086785
Wissuwa J, Bauer SL, Steen IH, Stokke R. 2017. Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system. Stand Genomic Sci 12: 5.
doi: 10.1186/s40793-016-0219-x PMID:28078050
Ketto IA, Knutsen TM, Øyaas J, Heringstad B, Ådnøy T, Devold TG, Skeie SB. 2017. Effects of milk protein polymorphism and composition, casein micelle size and salt distribution on the milk coagulation properties in Norwegian Red cattle. International Dairy Journal 70: 55-64.
doi: 10.1016/j.idairyj.2016.10.010
Khomich M, Kauserud H, Logares R, Rasconi S, Andersen T. 2017. Planktonic protistan communities in lakes along a large-scale environmental gradient. FEMS Microbiol Ecol 93.
doi: 10.1093/femsec/fiw231 PMID:27827804
2016
Lund C, Striano P, Sorte HS, Parisi P, Iacomino M, Sheng Y, Vigeland MD, Øye AM, Møller RS, Selmer KK, Zara F. 2016. Exome Sequencing Fails to Identify the Genetic Cause of Aicardi Syndrome. Mol Syndromol 7: 234-238.
doi: 10.1159/000448367 PMID:27781033
Moen MN, Fjær R, Hamdani EH, Laerdahl JK, Menchini RJ, Vigeland MD, Sheng Y, Undlien DE, Hassel B, Salih MA, El Khashab HY, Selmer KK, Chaudhry FA. 2016. Pathogenic variants in KCTD7 perturb neuronal K+ fluxes and glutamine transport. Brain 139: 3109-3120.
doi: 10.1093/brain/aww244 PMID:27742667
Rydning SL, Wedding IM, Koht J, Chawla M, Øye AM, Sheng Y, Vigeland MD, Selmer KK, Tallaksen CM. 2016. A founder mutation p.H701P identified as a major cause of SPG7 in Norway. Eur J Neurol 23: 763-71.
doi: 10.1111/ene.12937 PMID:26756429
Dahal-Koirala S, Risnes LF, Christophersen A, Sarna VK, Lundin KE, Sollid LM, Qiao SW. 2016. TCR sequencing of single cells reactive to DQ2.5-glia-α2 and DQ2.5-glia-ω2 reveals clonal expansion and epitope-specific V-gene usage. Mucosal Immunol 9: 587-96.
doi: 10.1038/mi.2015.147 PMID:26838051
Hagen LH, Frank JA, Zamanzadeh M, Eijsink VG, Pope PB, Horn SJ, Arntzen MØ. 2017. Quantitative Metaproteomics Highlight the Metabolic Contributions of Uncultured Phylotypes in a Thermophilic Anaerobic Digester. Appl Environ Microbiol 83.
doi: 10.1128/AEM.01955-16 PMID:27815274
Porse A, Schønning K, Munck C, Sommer MO. 2016. Survival and Evolution of a Large Multidrug Resistance Plasmid in New Clinical Bacterial Hosts. Mol Biol Evol 33: 2860-2873.
doi: 10.1093/molbev/msw163 PMID:27501945
Steen IH, Dahle H, Stokke R, Roalkvam I, Daae FL, Rapp HT, Pedersen RB, Thorseth IH. 2016. Novel Barite Chimneys at the Loki's Castle Vent Field Shed Light on Key Factors Shaping Microbial Communities and Functions in Hydrothermal Systems. Front Microbiol 6: 1510.
doi: 10.3389/fmicb.2015.01510 PMID:26779165
Bjørnsgaard Aas A, Davey ML, Kauserud H. 2017. ITS all right mama: investigating the formation of chimeric sequences in the ITS2 region by DNA metabarcoding analyses of fungal mock communities of different complexities. Mol Ecol Resour 17: 730-741.
doi: 10.1111/1755-0998.12622 PMID:27775220
Salgado-Flores A, Bockwoldt M, Hagen LH, Pope PB, Sundset MA. 2016. First insight into the faecal microbiota of the high Arctic muskoxen (Ovibos moschatus). Microb Genom 2: e000066.
doi: 10.1099/mgen.0.000066 PMID:28348861
Samaras A, Dimitroglou A, Sarropoulou E, Papaharisis L, Kottaras L, Pavlidis M. 2016. Repeatability of cortisol stress response in the European sea bass (Dicentrarchus labrax) and transcription differences between individuals with divergent responses. Sci Rep 6: 34858.
doi: 10.1038/srep34858 PMID:27703277
Cross H, Sønstebø JH, Nagy NE, Timmermann V, Solheim H, Børja I, Kauserud H, Carlsen T, Rzepka B, Wasak K, Vivian-Smith A, Hietala AM. 2017. Fungal diversity and seasonal succession in ash leaves infected by the invasive ascomycete Hymenoscyphus fraxineus. New Phytol 213: 1405-1417.
doi: 10.1111/nph.14204 PMID:27716950
Mirkovic N, Polovic N, Vukotic G, Jovcic B, Miljkovic M, Radulovic Z, Diep DB, Kojic M. 2016. Lactococcus lactis LMG2081 Produces Two Bacteriocins, a Nonlantibiotic and a Novel Lantibiotic. Appl Environ Microbiol 82: 2555-62.
doi: 10.1128/AEM.03988-15 PMID:26896142
Kaitetzidou E, Ludwig A, Gessner J, Sarropoulou E. 2016. Expression Patterns of Atlantic Sturgeon (Acipenser oxyrinchus) During Embryonic Development. G3 (Bethesda).
doi: 10.1534/g3.116.036699 PMID:27974440
De Santi C, Altermark B, Pierechod MM, Ambrosino L, de Pascale D, Willassen NP. 2016. Characterization of a cold-active and salt tolerant esterase identified by functional screening of Arctic metagenomic libraries. BMC Biochem 17: 1.
doi: 10.1186/s12858-016-0057-x PMID:26782782
Ovchinnikov KV, Chi H, Mehmeti I, Holo H, Nes IF, Diep DB. 2016. Novel Group of Leaderless Multipeptide Bacteriocins from Gram-Positive Bacteria. Appl Environ Microbiol 82: 5216-24.
doi: 10.1128/AEM.01094-16 PMID:27316965
Zha Y, Berga M, Comte J, Langenheder S. 2016. Effects of Dispersal and Initial Diversity on the Composition and Functional Performance of Bacterial Communities. PLoS One 11: e0155239.
doi: 10.1371/journal.pone.0155239 PMID:27182596
Lanzén A, Lekang K, Jonassen I, Thompson EM, Troedsson C. 2016. High-throughput metabarcoding of eukaryotic diversity for environmental monitoring of offshore oil-drilling activities. Mol Ecol 25: 4392-406.
doi: 10.1111/mec.13761 PMID:27454455
Kristoffersen C, Jensen RB, Avershina E, Austbø D, Tauson AH, Rudi K. 2016. Diet-Dependent Modular Dynamic Interactions of the Equine Cecal Microbiota. Microbes Environ 31: 378-386.
doi: 10.1264/jsme2.ME16061 PMID:27773914
Panagopoulos I, Gorunova L, Kerndrup G, Spetalen S, Tierens A, Osnes LT, Andersen K, Müller LS, Hellebostad M, Zeller B, Heim S. 2016. Rare MLL-ELL fusion transcripts in childhood acute myeloid leukemia-association with young age and myeloid sarcomas?. Exp Hematol Oncol 5: 8.
doi: 10.1186/s40164-016-0037-2 PMID:26949571
Barøy T, Pedurupillay CR, Bliksrud YT, Rasmussen M, Holmgren A, Vigeland MD, Hughes T, Brink M, Rodenburg R, Nedregaard B, Strømme P, Frengen E, Misceo D. 2016. A novel mutation in FBXL4 in a Norwegian child with encephalomyopathic mitochondrial DNA depletion syndrome 13. Eur J Med Genet 59: 342-6.
doi: 10.1016/j.ejmg.2016.05.005 PMID:27182039
Wissuwa J, Stokke R, Fedøy AE, Lian K, Smalås AO, Steen IH. 2016. Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site. Stand Genomic Sci 11: 16.
doi: 10.1186/s40793-016-0137-y PMID:26913091
Trucchi E, Facon B, Gratton P, Mori E, Stenseth NC, Jentoft S. 2016. Long live the alien: is high genetic diversity a pivotal aspect of crested porcupine (Hystrix cristata) long-lasting and successful invasion?. Mol Ecol 25: 3527-39.
doi: 10.1111/mec.13698 PMID:27171527
Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JK, Olav Vik J, Vigeland MD, Caler L, Grimholt U, Jentoft S, Våge DI, de Jong P, Moen T, Baranski M, Palti Y, Smith DR, Yorke JA, Nederbragt AJ, Tooming-Klunderud A, Jakobsen KS, Jiang X, Fan D, Hu Y, Liberles DA, Vidal R, Iturra P, Jones SJ, Jonassen I, Maass A, Omholt SW, Davidson WS. 2016. The Atlantic salmon genome provides insights into rediploidization. Nature 533: 200-5.
doi: 10.1038/nature17164 PMID:27088604
Frank JA, Pan Y, Tooming-Klunderud A, Eijsink VG, McHardy AC, Nederbragt AJ, Pope PB. 2016. Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Sci Rep 6: 25373.
doi: 10.1038/srep25373 PMID:27156482
Kjærner-Semb E, Ayllon F, Furmanek T, Wennevik V, Dahle G, Niemelä E, Ozerov M, Vähä JP, Glover KA, Rubin CJ, Wargelius A, Edvardsen RB. 2016. Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection. BMC Genomics 17: 610.
doi: 10.1186/s12864-016-2867-z PMID:27515098
Iqbal Z, Pihlstrøm L, Rengmark A, Henriksen SP, Linder J, Forsgren L, Toft M. 2016. Rare variants in dementia genes and Parkinson's disease. Eur J Hum Genet 24: 1661-1662.
doi: 10.1038/ejhg.2016.79 PMID:27329738
Rengmark A, Pihlstrøm L, Linder J, Forsgren L, Toft M. 2016. Low frequency of GCH1 and TH mutations in Parkinson's disease. Parkinsonism Relat Disord 29: 109-11.
doi: 10.1016/j.parkreldis.2016.05.010 PMID:27185167
Stray-Pedersen A, Sorte HS, Samarakoon P, Gambin T, Chinn IK, Coban Akdemir ZH, Erichsen HC, Forbes LR, Gu S, Yuan B, Jhangiani SN, Muzny DM, Rødningen OK, Sheng Y, Nicholas SK, Noroski LM, Seeborg FO, Davis CM, Canter DL, Mace EM, Vece TJ, Allen CE, Abhyankar HA, Boone PM, Beck CR, Wiszniewski W, Fevang B, Aukrust P, Tjønnfjord GE, Gedde-Dahl T, Hjorth-Hansen H, Dybedal I, Nordøy I, Jørgensen SF, Abrahamsen TG, Øverland T, Bechensteen AG, Skogen V, Osnes LT, Kulseth MA, Prescott TE, Rustad CF, Heimdal KR, Belmont JW, Rider NL, Chinen J, Cao TN, Smith EA, Caldirola MS, Bezrodnik L, Lugo Reyes SO, Espinosa Rosales FJ, Guerrero-Cursaru ND, Pedroza LA, Poli CM, Franco JL, Trujillo Vargas CM, Aldave Becerra JC, Wright N, Issekutz TB, Issekutz AC, Abbott J, Caldwell JW, Bayer DK, Chan AY, Aiuti A, Cancrini C, Holmberg E, West C, Burstedt M, Karaca E, Yesil G, Artac H, Bayram Y, Atik MM, Eldomery MK, Ehlayel MS, Jolles S, Flatø B, Bertuch AA, Hanson IC, Zhang VW, Wong LJ, Hu J, Walkiewicz M, Yang Y, Eng CM, Boerwinkle E, Gibbs RA, Shearer WT, Lyle R, Orange JS, Lupski JR. 2017. Primary immunodeficiency diseases: Genomic approaches delineate heterogeneous Mendelian disorders. J Allergy Clin Immunol 139: 232-245.
doi: 10.1016/j.jaci.2016.05.042 PMID:27577878
Kuehn HS, Boisson B, Cunningham-Rundles C, Reichenbach J, Stray-Pedersen A, Gelfand EW, Maffucci P, Pierce KR, Abbott JK, Voelkerding KV, South ST, Augustine NH, Bush JS, Dolen WK, Wray BB, Itan Y, Cobat A, Sorte HS, Ganesan S, Prader S, Martins TB, Lawrence MG, Orange JS, Calvo KR, Niemela JE, Casanova JL, Fleisher TA, Hill HR, Kumánovics A, Conley ME, Rosenzweig SD. 2016. Loss of B Cells in Patients with Heterozygous Mutations in IKAROS. N Engl J Med 374: 1032-43.
doi: 10.1056/NEJMoa1512234 PMID:26981933
Velmurugan J, Mollison E, Barth S, Marshall D, Milne L, Creevey CJ, Lynch B, Meally H, McCabe M, Milbourne D. 2016. An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly. Ann Bot 118: 71-87.
doi: 10.1093/aob/mcw081 PMID:27268483
Liljegren MM, de Muinck EJ, Trosvik P. 2016. Microsatellite Length Scoring by Single Molecule Real Time Sequencing - Effects of Sequence Structure and PCR Regime. PLoS One 11: e0159232.
doi: 10.1371/journal.pone.0159232 PMID:27414800
Eldholm V, Pettersson JH, Brynildsrud OB, Kitchen A, Rasmussen EM, Lillebaek T, Rønning JO, Crudu V, Mengshoel AT, Debech N, Alfsnes K, Bohlin J, Pepperell CS, Balloux F. 2016. Armed conflict and population displacement as drivers of the evolution and dispersal of Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 113: 13881-13886.
doi: 10.1073/pnas.1611283113 PMID:27872285
Gervin K, Andreassen BK, Hjorthaug HS, Carlsen KC, Carlsen KH, Undlien DE, Lyle R, Munthe-Kaas MC. 2016. Intra-individual changes in DNA methylation not mediated by cell-type composition are correlated with aging during childhood. Clin Epigenetics 8: 110.
doi: 10.1186/s13148-016-0277-3 PMID:27785156
Aamot HU, Hofgaard IS, Lysøe E. 2017. Complete genome sequence of Luteibacter rhizovicinus strain LJ96T, isolated from the rhizosphere of barley (Hordeum vulgare L.) in Denmark. Genom Data 11: 104-105.
doi: 10.1016/j.gdata.2016.12.012 PMID:28123952
Dybwad M, Aarskaug T, Fykse EM, Henie Madslien E, Blatny JM. 2016. Complete Genome Sequences of Six Legionella pneumophila Isolates from Two Collocated Outbreaks of Legionnaires' Disease in 2005 and 2008 in Sarpsborg/Fredrikstad, Norway. Genome Announc 4.
doi: 10.1128/genomeA.01367-16 PMID:27979936
Skauli N, Wallace S, Chiang SC, Barøy T, Holmgren A, Stray-Pedersen A, Bryceson YT, Strømme P, Frengen E, Misceo D. 2016. Novel PIGT Variant in Two Brothers: Expansion of the Multiple Congenital Anomalies-Hypotonia Seizures Syndrome 3 Phenotype. Genes (Basel) 7.
doi: 10.3390/genes7120108 PMID:27916860
Nistelberger HM, Smith O, Wales N, Star B, Boessenkool S. 2016. The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains. Sci Rep 6: 37347.
doi: 10.1038/srep37347 PMID:27881876
Dees MW, Brurberg MB, Lysøe E. 2016. Complete genome sequence of the biofilm-forming Microbacterium sp. strain BH-3-3-3, isolated from conventional field-grown lettuce (Lactuca sativa) in Norway. Genom Data 11: 7-8.
doi: 10.1016/j.gdata.2016.11.018 PMID:27900265
Lee S, Norheim F, Langleite TM, Noreng HJ, Storås TH, Afman LA, Frost G, Bell JD, Thomas EL, Kolnes KJ, Tangen DS, Stadheim HK, Gilfillan GD, Gulseth HL, Birkeland KI, Jensen J, Drevon CA, Holen T. 2016. Effect of energy restriction and physical exercise intervention on phenotypic flexibility as examined by transcriptomics analyses of mRNA from adipose tissue and whole body magnetic resonance imaging. Physiol Rep 4.
doi: 10.14814/phy2.13019 PMID:27821717
Dees MW, Brurberg MB, Lysøe E. 2016. Complete genome sequence of the biofilm-forming Curtobacterium sp. strain BH-2-1-1, isolated from lettuce (Lactuca sativa) originating from a conventional field in Norway. Genom Data 10: 135-136.
doi: 10.1016/j.gdata.2016.11.003 PMID:27872813
Boessenkool S, Hanghøj K, Nistelberger HM, Der Sarkissian C, Gondek AT, Orlando L, Barrett JH, Star B. 2017. Combining bleach and mild predigestion improves ancient DNA recovery from bones. Mol Ecol Resour 17: 742-751.
doi: 10.1111/1755-0998.12623 PMID:27790833
Olsen HG, Knutsen TM, Lewandowska-Sabat AM, Grove H, Nome T, Svendsen M, Arnyasi M, Sodeland M, Sundsaasen KK, Dahl SR, Heringstad B, Hansen HH, Olsaker I, Kent MP, Lien S. 2016. Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production. Genet Sel Evol 48: 79.
doi: 10.1186/s12711-016-0257-2 PMID:27760518
Star B, Hansen MH, Skage M, Bradbury IR, Godiksen JA, Kjesbu OS, Jentoft S. 2016. Preferential amplification of repetitive DNA during whole genome sequencing library creation from historic samples. STAR: Science & Technology of Archaeological Research 2: 36-45.
doi: 10.1080/20548923.2016.1160594
Sundaram AY, Hughes T, Biondi S, Bolduc N, Bowman SK, Camilli A, Chew YC, Couture C, Farmer A, Jerome JP, Lazinski DW, McUsic A, Peng X, Shazand K, Xu F, Lyle R, Gilfillan GD. 2016. A comparative study of ChIP-seq sequencing library preparation methods. BMC Genomics 17: 816.
doi: 10.1186/s12864-016-3135-y PMID:27769162
Johannessen LE, Panagopoulos I, Haugvik SP, Gladhaug IP, Heim S, Micci F. 2016. Upregulation of INS-IGF2 read-through expression and identification of a novel INS-IGF2 splice variant in insulinomas. Oncol Rep.
doi: 10.3892/or.2016.5132 PMID:27667266
Ray JL, Althammer J, Skaar KS, Simonelli P, Larsen A, Stoecker D, Sazhin A, Ijaz UZ, Quince C, Nejstgaard JC, Frischer M, Pohnert G, Troedsson C. 2016. Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Mol Ecol.
doi: 10.1111/mec.13844 PMID:27662431
Panagopoulos I, Gorunova L, Viset T, Heim S. 2016. Gene fusions AHRR-NCOA2, NCOA2-ETV4, ETV4-AHRR, P4HA2-TBCK, and TBCK-P4HA2 resulting from the translocations t(5;8;17)(p15;q13;q21) and t(4;5)(q24;q31) in a soft tissue angiofibroma. Oncol Rep.
doi: 10.3892/or.2016.5096 PMID:27633981
Panagopoulos I, Torkildsen S, Gorunova L, Ulvmoen A, Tierens A, Zeller B, Heim S. 2016. RUNX1 truncation resulting from a cryptic and novel t(6;21)(q25;q22) chromosome translocation in acute myeloid leukemia: A case report. Oncol Rep.
doi: 10.3892/or.2016.5119 PMID:27667292
Anmarkrud JA, Lifjeld JT. 2017. Complete mitochondrial genomes of eleven extinct or possibly extinct bird species. Mol Ecol Resour 17: 334-341.
doi: 10.1111/1755-0998.12600 PMID:27654125
Sorte HS, Osnes LT, Fevang B, Aukrust P, Erichsen HC, Backe PH, Abrahamsen TG, Kittang OB, Øverland T, Jhangiani SN, Muzny DM, Vigeland MD, Samarakoon P, Gambin T, Akdemir ZH, Gibbs RA, Rødningen OK, Lyle R, Lupski JR, Stray-Pedersen A. 2016. A potential founder variant in CARMIL2/RLTPR in three Norwegian families with warts, molluscum contagiosum, and T-cell dysfunction. Mol Genet Genomic Med 4: 604-16.
doi: 10.1002/mgg3.237 PMID:27896283
Henriksen EK, Jørgensen KK, Kaveh F, Holm K, Hamm D, Olweus J, Melum E, Chung BK, Eide TJ, Lundin KE, Boberg KM, Karlsen TH, Hirschfield GM, Liaskou E. 2017. Gut and liver T-cells of common clonal origin in primary sclerosing cholangitis-inflammatory bowel disease. J Hepatol 66: 116-122.
doi: 10.1016/j.jhep.2016.09.002 PMID:27647428
Fiorito E, Sharma Y, Gilfillan S, Wang S, Singh SK, Satheesh SV, Katika MR, Urbanucci A, Thiede B, Mills IG, Hurtado A. 2016. CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions. Nucleic Acids Res 44: 10588-10602.
doi: 10.1093/nar/gkw785 PMID:27638884
Williamson A, De Santi C, Altermark B, Karlsen C, Hjerde E. 2016. Complete genome sequence of Halomonas sp. R5-57. Stand Genomic Sci 11: 62.
doi: 10.1186/s40793-016-0192-4 PMID:27610212
Jørgensen SF, Trøseid M, Kummen M, Anmarkrud JA, Michelsen AE, Osnes LT, Holm K, Høivik ML, Rashidi A, Dahl CP, Vesterhus M, Halvorsen B, Mollnes TE, Berge RK, Moum B, Lundin KE, Fevang B, Ueland T, Karlsen TH, Aukrust P, Hov JR. 2016. Altered gut microbiota profile in common variable immunodeficiency associates with levels of lipopolysaccharide and markers of systemic immune activation. Mucosal Immunol 9: 1455-1465.
doi: 10.1038/mi.2016.18 PMID:26982597
Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp TH. 2016. Draft Genome Sequences of Two Bacillus anthracis Strains from Etosha National Park, Namibia. Genome Announc 4.
doi: 10.1128/genomeA.00861-16 PMID:27563043
Malmstrøm M, Matschiner M, Tørresen OK, Star B, Snipen LG, Hansen TF, Baalsrud HT, Nederbragt AJ, Hanel R, Salzburger W, Stenseth NC, Jakobsen KS, Jentoft S. 2016. Evolution of the immune system influences speciation rates in teleost fishes. Nat Genet 48: 1204-10.
doi: 10.1038/ng.3645 PMID:27548311
Møretrø T, Moen B, Heir E, Hansen AÅ, Langsrud S. 2016. Contamination of salmon fillets and processing plants with spoilage bacteria. Int J Food Microbiol 237: 98-108.
doi: 10.1016/j.ijfoodmicro.2016.08.016 PMID:27552347
Star B, Tørresen OK, Nederbragt AJ, Jakobsen KS, Pampoulie C, Jentoft S. 2016. Genomic characterization of the Atlantic cod sex-locus. Sci Rep 6: 31235.
doi: 10.1038/srep31235 PMID:27499266
Langleite TM, Jensen J, Norheim F, Gulseth HL, Tangen DS, Kolnes KJ, Heck A, Storås T, Grøthe G, Dahl MA, Kielland A, Holen T, Noreng HJ, Stadheim HK, Bjørnerud A, Johansen EI, Nellemann B, Birkeland KI, Drevon CA. 2016. Insulin sensitivity, body composition and adipose depots following 12 w combined endurance and strength training in dysglycemic and normoglycemic sedentary men. Arch Physiol Biochem.
doi: 10.1080/13813455.2016.1202985 PMID:27477619
Panagopoulos I, Gorunova L, Lund-Iversen M, Lobmaier I, Bjerkehagen B, Heim S. 2016. Recurrent fusion of the genes FN1 and ALK in gastrointestinal leiomyomas. Mod Pathol 29: 1415-1423.
doi: 10.1038/modpathol.2016.129 PMID:27469327
Pedurupillay CR, Landsend EC, Vigeland MD, Ansar M, Frengen E, Misceo D, Strømme P. 2016. Segregation of Incomplete Achromatopsia and Alopecia Due to PDE6H and LPAR6 Variants in a Consanguineous Family from Pakistan. Genes (Basel) 7.
doi: 10.3390/genes7080041 PMID:27472364
Gante HF, Matschiner M, Malmstrøm M, Jakobsen KS, Jentoft S, Salzburger W. 2016. Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika. Mol Ecol 25: 6143-6161.
doi: 10.1111/mec.13767 PMID:27452499
Sarropoulou E, Tsalafouta A, Sundaram AY, Gilfillan GD, Kotoulas G, Papandroulakis N, Pavlidis M. 2016. Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata). BMC Genomics 17: 506.
doi: 10.1186/s12864-016-2874-0 PMID:27461489
Lekva T, Lyle R, Roland MC, Friis C, Bianchi DW, Jaffe IZ, Norwitz ER, Bollerslev J, Henriksen T, Ueland T. 2016. Gene expression in term placentas is regulated more by spinal or epidural anesthesia than by late-onset preeclampsia or gestational diabetes mellitus. Sci Rep 6: 29715.
doi: 10.1038/srep29715 PMID:27405415
Olsen TK, Panagopoulos I, Gorunova L, Micci F, Andersen K, Kilen Andersen H, Meling TR, Due-Tønnessen B, Scheie D, Heim S, Brandal P. 2016. Novel fusion genes and chimeric transcripts in ependymal tumors. Genes Chromosomes Cancer 55: 944-953.
doi: 10.1002/gcc.22392 PMID:27401149
Valen R, Eilertsen M, Edvardsen RB, Furmanek T, Rønnestad I, van der Meeren T, Karlsen Ø, Nilsen TO, Helvik JV. 2016. The two-step development of a duplex retina involves distinct events of cone and rod neurogenesis and differentiation. Dev Biol 416: 389-401.
doi: 10.1016/j.ydbio.2016.06.041 PMID:27374844
Pedurupillay CR, Amundsen SS, Barøy T, Rasmussen M, Blomhoff A, Stadheim BF, Ørstavik K, Holmgren A, Iqbal T, Frengen E, Misceo D, Strømme P. 2016. Clinical and molecular characteristics in three families with biallelic mutations in IGHMBP2. Neuromuscul Disord 26: 570-5.
doi: 10.1016/j.nmd.2016.06.457 PMID:27450922
Cristofari R, Bertorelle G, Ancel A, Benazzo A, Le Maho Y, Ponganis PJ, Stenseth NC, Trathan PN, Whittington JD, Zanetti E, Zitterbart DP, Le Bohec C, Trucchi E. 2016. Full circumpolar migration ensures evolutionary unity in the Emperor penguin. Nat Commun 7: 11842.
doi: 10.1038/ncomms11842 PMID:27296726
Micci F, Gorunova L, Agostini A, Johannessen LE, Brunetti M, Davidson B, Heim S, Panagopoulos I. 2016. Cytogenetic and molecular profile of endometrial stromal sarcoma. Genes Chromosomes Cancer 55: 834-46.
doi: 10.1002/gcc.22380 PMID:27219024
Salgado-Flores A, Hagen LH, Ishaq SL, Zamanzadeh M, Wright AD, Pope PB, Sundset MA. 2016. Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions. PLoS One 11: e0155213.
doi: 10.1371/journal.pone.0155213 PMID:27159387
Oppegård C, Kjos M, Veening JW, Nissen-Meyer J, Kristensen T. 2016. A putative amino acid transporter determines sensitivity to the two-peptide bacteriocin plantaricin JK. Microbiologyopen 5: 700-8.
doi: 10.1002/mbo3.363 PMID:27150273
Rämä T, Davey ML, Nordén J, Halvorsen R, Blaalid R, Mathiassen GH, Alsos IG, Kauserud H. 2016. Fungi Sailing the Arctic Ocean: Speciose Communities in North Atlantic Driftwood as Revealed by High-Throughput Amplicon Sequencing. Microb Ecol 72: 295-304.
doi: 10.1007/s00248-016-0778-9 PMID:27147245
Solbakken MH, Tørresen OK, Nederbragt AJ, Seppola M, Gregers TF, Jakobsen KS, Jentoft S. 2016. Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions. Sci Rep 6: 25211.
doi: 10.1038/srep25211 PMID:27126702
Mazzarella AB, Boessenkool S, Østbye K, Vøllestad LA, Trucchi E. 2016. Genomic signatures of the plateless phenotype in the threespine stickleback. Ecol Evol 6: 3161-73.
doi: 10.1002/ece3.2072 PMID:27096077
Ledsaak M, Bengtsen M, Molværsmyr AK, Fuglerud BM, Matre V, Eskeland R, Gabrielsen OS. 2016. PIAS1 binds p300 and behaves as a coactivator or corepressor of the transcription factor c-Myb dependent on SUMO-status. Biochim Biophys Acta 1859: 705-18.
doi: 10.1016/j.bbagrm.2016.03.011 PMID:27032383
Berg PR, Star B, Pampoulie C, Sodeland M, Barth JM, Knutsen H, Jakobsen KS, Jentoft S. 2016. Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod. Sci Rep 6: 23246.
doi: 10.1038/srep23246 PMID:26983361
Beulig F, Urich T, Nowak M, Trumbore SE, Gleixner G, Gilfillan GD, Fjelland KE, Küsel K. 2016. Altered carbon turnover processes and microbiomes in soils under long-term extremely high CO2 exposure. Nat Microbiol 1: 15025.
doi: 10.1038/nmicrobiol.2015.25 PMID:27571979
Gonzalez-Silva BM, Jonassen KR, Bakke I, Østgaard K, Vadstein O. 2016. Nitrification at different salinities: Biofilm community composition and physiological plasticity. Water Res 95: 48-58.
doi: 10.1016/j.watres.2016.02.050 PMID:26986496
Sørhus E, Incardona JP, Furmanek T, Jentoft S, Meier S, Edvardsen RB. 2016. Developmental transcriptomics in Atlantic haddock: Illuminating pattern formation and organogenesis in non-model vertebrates. Dev Biol 411: 301-13.
doi: 10.1016/j.ydbio.2016.02.012 PMID:26875497
Kummen M, Holm K, Anmarkrud JA, Nygård S, Vesterhus M, Høivik ML, Trøseid M, Marschall HU, Schrumpf E, Moum B, Røsjø H, Aukrust P, Karlsen TH, Hov JR. 2017. The gut microbial profile in patients with primary sclerosing cholangitis is distinct from patients with ulcerative colitis without biliary disease and healthy controls. Gut 66: 611-619.
doi: 10.1136/gutjnl-2015-310500 PMID:26887816
Samarakoon PS, Sorte HS, Stray-Pedersen A, Rødningen OK, Rognes T, Lyle R. 2016. cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. BMC Genomics 17: 51.
doi: 10.1186/s12864-016-2374-2 PMID:26764020
Henry IA, Einbu A, Svendsen HF, Bakke I, ÿstgaard K. 2016. Inhibition factors in biofilm N removal systems treating wastes generated by amine based CO 2 capture. International Journal of Greenhouse Gas Control 45: 200-6.
doi: 10.1016/j.ijggc.2015.12.023
Langsrud S, Moen B, Møretrø T, Løype M, Heir E. 2016. Microbial dynamics in mixed culture biofilms of bacteria surviving sanitation of conveyor belts in salmon-processing plants. J Appl Microbiol 120: 366-78.
doi: 10.1111/jam.13013 PMID:26613979
2015
Hagen LH, Vivekanand V, Pope PB, Eijsink VG, Horn SJ. 2015. The effect of storage conditions on microbial community composition and biomethane potential in a biogas starter culture. Appl Microbiol Biotechnol 99: 5749-61.
doi: 10.1007/s00253-015-6623-0 PMID:25947246
Botnen S, Kauserud H, Carlsen T, Blaalid R, Høiland K. 2015. Mycorrhizal fungal communities in coastal sand dunes and heaths investigated by pyrosequencing analyses. Mycorrhiza 25: 447-56.
doi: 10.1007/s00572-014-0624-1 PMID:25597300
Baldo L, Riera JL, Tooming-Klunderud A, Albà MM, Salzburger W. 2015. Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes. PLoS One 10: e0127462.
doi: 10.1371/journal.pone.0127462 PMID:25978452
Dahle H, Økland I, Thorseth IH, Pederesen RB, Steen IH. 2015. Energy landscapes shape microbial communities in hydrothermal systems on the Arctic Mid-Ocean Ridge. ISME J 9: 1593-606.
doi: 10.1038/ismej.2014.247 PMID:25575309
Casén C, Vebø HC, Sekelja M, Hegge FT, Karlsson MK, Ciemniejewska E, Dzankovic S, Frøyland C, Nestestog R, Engstrand L, Munkholm P, Nielsen OH, Rogler G, Simrén M, Öhman L, Vatn MH, Rudi K. 2015. Deviations in human gut microbiota: a novel diagnostic test for determining dysbiosis in patients with IBS or IBD. Aliment Pharmacol Ther 42: 71-83.
doi: 10.1111/apt.13236 PMID:25973666
Fjaer R, Brodtkorb E, Øye AM, Sheng Y, Vigeland MD, Kvistad KA, Backe PH, Selmer KK. 2015. Generalized epilepsy in a family with basal ganglia calcifications and mutations in SLC20A2 and CHRNB2. Eur J Med Genet 58: 624-8.
doi: 10.1016/j.ejmg.2015.10.005 PMID:26475232
Roalkvam I, Drønen K, Stokke R, Daae FL, Dahle H, Steen IH. 2015. Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria. Front Microbiol 6: 987.
doi: 10.3389/fmicb.2015.00987 PMID:26441916
Umu ÖC, Frank JA, Fangel JU, Oostindjer M, da Silva CS, Bolhuis EJ, Bosch G, Willats WG, Pope PB, Diep DB. 2015. Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations. Microbiome 3: 16.
doi: 10.1186/s40168-015-0078-5 PMID:25905018
Panagopoulos I, Gorunova L, Bjerkehagen B, Lobmaier I, Heim S. 2015. LAMTOR1-PRKCD and NUMA1-SFMBT1 fusion genes identified by RNA sequencing in aneurysmal benign fibrous histiocytoma with t(3;11)(p21;q13). Cancer Genet 208: 545-51.
doi: 10.1016/j.cancergen.2015.07.007 PMID:26432191
Porcellato D, Frantzen C, Rangberg A, Umu OC, Gabrielsen C, Nes IF, Amdam GV, Diep DB. 2015. Draft Genome Sequence of Lactobacillus kunkeei AR114 Isolated from Honey Bee Gut. Genome Announc 3.
doi: 10.1128/genomeA.00144-15 PMID:25792062
Dotterud CK, Avershina E, Sekelja M, Simpson MR, Rudi K, Storrø O, Johnsen R, Øien T. 2015. Does Maternal Perinatal Probiotic Supplementation Alter the Intestinal Microbiota of Mother and Child?. J Pediatr Gastroenterol Nutr 61: 200-7.
doi: 10.1097/MPG.0000000000000781 PMID:25782657
Nowak P, Troseid M, Avershina E, Barqasho B, Neogi U, Holm K, Hov JR, Noyan K, Vesterbacka J, Svärd J, Rudi K, Sönnerborg A. 2015. Gut microbiota diversity predicts immune status in HIV-1 infection. AIDS 29: 2409-18.
doi: 10.1097/QAD.0000000000000869 PMID:26355675
Logue JB, Stedmon CA, Kellerman AM, Nielsen NJ, Andersson AF, Laudon H, Lindström ES, Kritzberg ES. 2016. Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter. ISME J 10: 533-45.
doi: 10.1038/ismej.2015.131 PMID:26296065
Olsen S, Striberny B, Hollmann J, Schwacke R, Popper Z, Krause K. 2016. Getting ready for host invasion: elevated expression and action of xyloglucan endotransglucosylases/hydrolases in developing haustoria of the holoparasitic angiosperm Cuscuta. J Exp Bot 67: 695-708.
doi: 10.1093/jxb/erv482 PMID:26561437
Santos SN, Gacesa R, Taketani RG, Long PF, Melo IS. 2015. Genome Sequence of Streptomyces caatingaensis CMAA 1322, a New Abiotic Stress-Tolerant Actinomycete Isolated from Dried Lake Bed Sediment in the Brazilian Caatinga Biome. Genome Announc 3.
doi: 10.1128/genomeA.01020-15 PMID:26358601
Santos SN, Kavamura VN, Taketani RG, Vasconcellos RL, Zucchi TD, Melo IS. 2015. Draft Genome Sequence of Bacillus sp. Strain CMAA 1185, a Cellullolytic Bacterium Isolated from Stain House Lake, Antarctic Peninsula. Genome Announc 3.
doi: 10.1128/genomeA.00436-15 PMID:26021916
Rueness EK, Trosvik P, Atickem A, Sillero-Zubiri C, Trucchi E. 2015. The African wolf is a missing link in the wolf-like canid phylogeny. .
doi: 10.1101/017996
Read TD, Petit III RA, Joseph SJ, Alam MT, RW, Ahmad M, Bhimani R, Vuong JS, Haase CP, Webb H, Dove ADM. 2015. Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus Smith 1828. PeerJ PrePrints.
doi: 10.7287/peerj.preprints.837v1
Bråte J, Adamski M, Neumann RS, Shalchian-Tabrizi K, Adamska M. 2015. Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proc Biol Sci 282.
doi: 10.1098/rspb.2015.1746 PMID:26702038
Hjerde E, Karlsen C, Sørum H, Parkhill J, Willassen NP, Thomson NR. 2015. Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. BMC Genomics 16: 447.
doi: 10.1186/s12864-015-1669-z PMID:26059548
Ayllon F, Kjærner-Semb E, Furmanek T, Wennevik V, Solberg MF, Dahle G, Taranger GL, Glover KA, Almén MS, Rubin CJ, Edvardsen RB, Wargelius A. 2015. The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males. PLoS Genet 11: e1005628.
doi: 10.1371/journal.pgen.1005628 PMID:26551894
Penglase S, Edvardsen RB, Furmanek T, Rønnestad I, Karlsen Ø, van der Meeren T, Hamre K. 2015. Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae. Redox Biol 5: 308-18.
doi: 10.1016/j.redox.2015.06.003 PMID:26099546
Dees MW, Lysøe E, Alsheikh M, Davik J, Brurberg MB. 2016. Resistance to Streptomyces turgidiscabies in potato involves an early and sustained transcriptional reprogramming at initial stages of tuber formation. Mol Plant Pathol 17: 703-13.
doi: 10.1111/mpp.12323 PMID:26416294
Olsen PA, Lund K, Krauss S. 2015. Expression profiling of wild type and β-catenin gene disrupted human BxPC-3 pancreatic adenocarcinoma cells. Genom Data 4: 150-2.
doi: 10.1016/j.gdata.2015.04.010 PMID:26484203
Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M. 2015. Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae). PLoS One 10: e0140175.
doi: 10.1371/journal.pone.0140175 PMID:26448557
Berg PR, Jentoft S, Star B, Ring KH, Knutsen H, Lien S, Jakobsen KS, André C. 2015. Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.). Genome Biol Evol 7: 1644-63.
doi: 10.1093/gbe/evv093 PMID:25994933
Holm KO, Nilsson K, Hjerde E, Willassen NP, Milton DL. 2015. Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia. Stand Genomic Sci 10: 60.
doi: 10.1186/s40793-015-0060-7 PMID:26380645
Munkley J, Oltean S, Vodák D, Wilson BT, Livermore KE, Zhou Y, Star E, Floros VI, Johannessen B, Knight B, McCullagh P, McGrath J, Crundwell M, Skotheim RI, Robson CN, Leung HY, Harries LW, Rajan P, Mills IG, Elliott DJ. 2015. The androgen receptor controls expression of the cancer-associated sTn antigen and cell adhesion through induction of ST6GalNAc1 in prostate cancer. Oncotarget 6: 34358-74.
doi: 10.18632/oncotarget.6024 PMID:26452038
Rounge TB, Lauritzen M, Langseth H, Enerly E, Lyle R, Gislefoss RE. 2015. microRNA Biomarker Discovery and High-Throughput DNA Sequencing Are Possible Using Long-term Archived Serum Samples. Cancer Epidemiol Biomarkers Prev 24: 1381-7.
doi: 10.1158/1055-9965.EPI-15-0289 PMID:26108462
García-Moyano A, Austnes AE, Lanzén A, González-Toril E, Aguilera Á, Øvreås L. 2015. Novel and Unexpected Microbial Diversity in Acid Mine Drainage in Svalbard (78° N), Revealed by Culture-Independent Approaches. Microorganisms 3: 667-94.
doi: 10.3390/microorganisms3040667 PMID:27682111
Panagopoulos I, Gorunova L, Bjerkehagen B, Heim S. 2015. Novel KAT6B-KANSL1 fusion gene identified by RNA sequencing in retroperitoneal leiomyoma with t(10;17)(q22;q21). PLoS One 10: e0117010.
doi: 10.1371/journal.pone.0117010 PMID:25621995
Ravi A, Avershina E, Foley SL, Ludvigsen J, Storrø O, Øien T, Johnsen R, McCartney AL, L'Abée-Lund TM, Rudi K. 2015. The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons. Sci Rep 5: 15317.
doi: 10.1038/srep15317 PMID:26507767
Panagopoulos I, Gorunova L, Bjerkehagen B, Lobmaier I, Heim S. 2016. Fusion of the TBL1XR1 and HMGA1 genes in splenic hemangioma with t(3;6)(q26;p21). Int J Oncol 48: 1242-50.
doi: 10.3892/ijo.2015.3310 PMID:26708416
Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M. 2015. RAD-seq data point to a northern origin of the arctic-alpine genus Cassiope (Ericaceae). Mol Phylogenet Evol 95: 152-160.
doi: 10.1016/j.ympev.2015.11.009 PMID:26691641
Gratton P, Trucchi E, Trasatti A, Riccarducci G, Marta S, Allegrucci G, Cesaroni D, Sbordoni V. 2016. Testing Classical Species Properties with Contemporary Data: How "Bad Species" in the Brassy Ringlets (Erebia tyndarus complex, Lepidoptera) Turned Good. Syst Biol 65: 292-303.
doi: 10.1093/sysbio/syv087 PMID:26568458
Moen B, Røssvoll E, Måge I, Møretrø T, Langsrud S. 2016. Microbiota formed on attached stainless steel coupons correlates with the natural biofilm of the sink surface in domestic kitchens. Can J Microbiol 62: 148-60.
doi: 10.1139/cjm-2015-0562 PMID:26758935
Olsen-Bergem H, Kristoffersen AK, Bjørnland T, Reseland JE, Aas JA. 2016. Juvenile idiopathic arthritis and rheumatoid arthritis: bacterial diversity in temporomandibular joint synovial fluid in comparison with immunological and clinical findings. Int J Oral Maxillofac Surg 45: 318-22.
doi: 10.1016/j.ijom.2015.08.986 PMID:26554824
Barson NJ, Aykanat T, Hindar K, Baranski M, Bolstad GH, Fiske P, Jacq C, Jensen AJ, Johnston SE, Karlsson S, Kent M, Moen T, Niemelä E, Nome T, Næsje TF, Orell P, Romakkaniemi A, Sægrov H, Urdal K, Erkinaro J, Lien S, Primmer CR. 2015. Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon. Nature 528: 405-8.
doi: 10.1038/nature16062 PMID:26536110
Pedurupillay CR, Barøy T, Holmgren A, Blomhoff A, Vigeland MD, Sheng Y, Frengen E, Strømme P, Misceo D. 2015. Kaufman oculocerebrofacial syndrome in sisters with novel compound heterozygous mutation in UBE3B. Am J Med Genet A 167A: 657-63.
doi: 10.1002/ajmg.a.36944 PMID:25691420
Barøy T, Koster J, Strømme P, Ebberink MS, Misceo D, Ferdinandusse S, Holmgren A, Hughes T, Merckoll E, Westvik J, Woldseth B, Walter J, Wood N, Tvedt B, Stadskleiv K, Wanders RJ, Waterham HR, Frengen E. 2015. A novel type of rhizomelic chondrodysplasia punctata, RCDP5, is caused by loss of the PEX5 long isoform. Hum Mol Genet 24: 5845-54.
doi: 10.1093/hmg/ddv305 PMID:26220973
Simachew A, Lanzén A, Gessesse A, Øvreås L. 2016. Prokaryotic Community Diversity Along an Increasing Salt Gradient in a Soda Ash Concentration Pond. Microb Ecol 71: 326-38.
doi: 10.1007/s00248-015-0675-7 PMID:26408190
Pettersen VK, Steinsland H, Wiker HG. 2015. Improving genome annotation of enterotoxigenic Escherichia coli TW10598 by a label-free quantitative MS/MS approach. Proteomics 15: 3826-34.
doi: 10.1002/pmic.201500278 PMID:26349841
Stiksrud B, Nowak P, Nwosu FC, Kvale D, Thalme A, Sonnerborg A, Ueland PM, Holm K, Birkeland SE, Dahm AE, Sandset PM, Rudi K, Hov JR, Dyrhol-Riise AM, Trøseid M. 2015. Reduced Levels of D-dimer and Changes in Gut Microbiota Composition After Probiotic Intervention in HIV-Infected Individuals on Stable ART. J Acquir Immune Defic Syndr 70: 329-37.
doi: 10.1097/QAI.0000000000000784 PMID:26258571
Pourteymour S, Lee S, Langleite TM, Eckardt K, Hjorth M, Bindesbøll C, Dalen KT, Birkeland KI, Drevon CA, Holen T, Norheim F. 2015. Perilipin 4 in human skeletal muscle: localization and effect of physical activity. Physiol Rep 3.
doi: 10.14814/phy2.12481 PMID:26265748
Liaskou E, Henriksen EK, Holm K, Kaveh F, Hamm D, Fear J, Viken MK, Hov JR, Melum E, Robins H, Olweus J, Karlsen TH, Hirschfield GM. 2016. High-throughput T-cell receptor sequencing across chronic liver diseases reveals distinct disease-associated repertoires. Hepatology 63: 1608-19.
doi: 10.1002/hep.28116 PMID:26257205
Torkildsen S, Gorunova L, Beiske K, Tjønnfjord GE, Heim S, Panagopoulos I. 2015. Novel ZEB2-BCL11B Fusion Gene Identified by RNA-Sequencing in Acute Myeloid Leukemia with t(2;14)(q22;q32). PLoS One 10: e0132736.
doi: 10.1371/journal.pone.0132736 PMID:26186352
Sun L, Pope PB, Eijsink VG, Schnürer A. 2015. Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure. Microb Biotechnol 8: 815-27.
doi: 10.1111/1751-7915.12298 PMID:26152665
Lundén K, Danielsson M, Durling MB, Ihrmark K, Gorriz MN, Stenlid J, Asiegbu FO, Elfstrand M. 2015. Transcriptional Responses Associated with Virulence and Defence in the Interaction between Heterobasidion annosum s.s. and Norway Spruce. PLoS One 10: e0131182.
doi: 10.1371/journal.pone.0131182 PMID:26151363
Stokke R, Dahle H, Roalkvam I, Wissuwa J, Daae FL, Tooming-Klunderud A, Thorseth IH, Pedersen RB, Steen IH. 2015. Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environ Microbiol 17: 4063-77.
doi: 10.1111/1462-2920.12970 PMID:26147346
Flåtten I, Fossum-Raunehaug S, Taipale R, Martinsen S, Skarstad K. 2015. The DnaA Protein Is Not the Limiting Factor for Initiation of Replication in Escherichia coli. PLoS Genet 11: e1005276.
doi: 10.1371/journal.pgen.1005276 PMID:26047361
Gabrielsen C, Drabløs F, Afset JE. 2015. Genome Sequences of 11 Shiga Toxin-Producing Escherichia coli Strains. Genome Announc 3.
doi: 10.1128/genomeA.00418-15 PMID:25977421
Snir O, Mesin L, Gidoni M, Lundin KE, Yaari G, Sollid LM. 2015. Analysis of Celiac Disease Autoreactive Gut Plasma Cells and Their Corresponding Memory Compartment in Peripheral Blood Using High-Throughput Sequencing. J Immunol 194: 5703-12.
doi: 10.4049/jimmunol.1402611 PMID:25972486
Eldholm V, Monteserin J, Rieux A, Lopez B, Sobkowiak B, Ritacco V, Balloux F. 2015. Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain. Nat Commun 6: 7119.
doi: 10.1038/ncomms8119 PMID:25960343
Epp LS, Gussarova G, Boessenkool S, Olsen J, Haile J, Schrøder-Nielsen A, Ludikova A, Hassel K, Stenøien HK, Funder S, Willerslev E, Kjær K, Brochmann C. 2015. Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes. Quaternary Science Reviews 117: 152-63.
doi: 10.1016/j.quascirev.2015.03.027
Tveit AT, Urich T, Frenzel P, Svenning MM. 2015. Metabolic and trophic interactions modulate methane production by Arctic peat microbiota in response to warming. Proc Natl Acad Sci U S A 112: E2507-16.
doi: 10.1073/pnas.1420797112 PMID:25918393
Bakke I, Coward E, Andersen T, Vadstein O. 2015. Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua). Environ Microbiol 17: 3914-24.
doi: 10.1111/1462-2920.12888 PMID:25923170
Egge ES, Johannessen TV, Andersen T, Eikrem W, Bittner L, Larsen A, Sandaa RA, Edvardsen B. 2015. Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing. Mol Ecol 24: 3026-42.
doi: 10.1111/mec.13160 PMID:25893259
Pihlstrøm L, Rengmark A, Bjørnarå KA, Dizdar N, Fardell C, Forsgren L, Holmberg B, Larsen JP, Linder J, Nissbrandt H, Tysnes OB, Dietrichs E, Toft M. 2015. Fine mapping and resequencing of the PARK16 locus in Parkinson's disease. J Hum Genet 60: 357-62.
doi: 10.1038/jhg.2015.34 PMID:25855069
La Rosa SL, Snipen LG, Murray BE, Willems RJ, Gilmore MS, Diep DB, Nes IF, Brede DA. 2015. A Genomic Virulence Reference Map of Enterococcus faecalis Reveals an Important Contribution of Phage03-Like Elements in Nosocomial Genetic Lineages to Pathogenicity in a Caenorhabditis elegans Infection Model. Infect Immun 83: 2156-67.
doi: 10.1128/IAI.02801-14 PMID:25776747
Olsen TK, Panagopoulos I, Meling TR, Micci F, Gorunova L, Thorsen J, Due-Tønnessen B, Scheie D, Lund-Iversen M, Krossnes B, Saxhaug C, Heim S, Brandal P. 2015. Fusion genes with ALK as recurrent partner in ependymoma-like gliomas: a new brain tumor entity?. Neuro Oncol 17: 1365-73.
doi: 10.1093/neuonc/nov039 PMID:25795305
Albrecht E, Norheim F, Thiede B, Holen T, Ohashi T, Schering L, Lee S, Brenmoehl J, Thomas S, Drevon CA, Erickson HP, Maak S. 2015. Irisin - a myth rather than an exercise-inducible myokine. Sci Rep 5: 8889.
doi: 10.1038/srep08889 PMID:25749243
Davey M, Blaalid R, Vik U, Carlsen T, Kauserud H, Eidesen PB. 2015. Primary succession of Bistorta vivipara (L.) Delabre (Polygonaceae) root-associated fungi mirrors plant succession in two glacial chronosequences. Environ Microbiol 17: 2777-90.
doi: 10.1111/1462-2920.12770 PMID:25580779
Nguyen TT, Landfald B. 2015. Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor. Front Microbiol 6: 17.
doi: 10.3389/fmicb.2015.00017 PMID:25667586
2014
Severin I, Lindström ES, Ostman O. 2014. Relationships between bacterial community composition, functional trait composition and functioning are context dependent--but what is the context?. PLoS One 9: e112409.
doi: 10.1371/journal.pone.0112409 PMID:25380200
Micklem DR, Blø M, Bergström P, Hodneland E, Tiron C, Høiby T, Gjerdrum C, Hammarsten O, Lorens JB. 2014. Flow cytometry-based functional selection of RNA interference triggers for efficient epi-allelic analysis of therapeutic targets. BMC Biotechnol 14: 57.
doi: 10.1186/1472-6750-14-57 PMID:24952598
Naseribafrouei A, Hestad K, Avershina E, Sekelja M, Linløkken A, Wilson R, Rudi K. 2014. Correlation between the human fecal microbiota and depression. Neurogastroenterol Motil 26: 1155-62.
doi: 10.1111/nmo.12378 PMID:24888394
Porcellato D, Ostlie HM, Skeie SB. 2014. Draft Genome Sequence of Enterococcus hirae Strain INF E1 Isolated from Cultured Milk. Genome Announc 2.
doi: 10.1128/genomeA.00498-14 PMID:25035319
Handeland K, Tengs T, Kokotovic B, Vikøren T, Ayling RD, Bergsjø B, Sigurðardóttir OG, Bretten T. 2014. Mycoplasma ovipneumoniae--a primary cause of severe pneumonia epizootics in the Norwegian Muskox (Ovibos moschatus) population. PLoS One 9: e106116.
doi: 10.1371/journal.pone.0106116 PMID:25198695
Fjøsne TF, Stenseth EB, Myromslien F, Rudi K. 2015. Gene expression of TLR homologues identified by genome-wide screening of the earthworm Dendrobaena veneta. Innate Immun 21: 161-6.
doi: 10.1177/1753425914523056 PMID:24574024
Trier CN, Hermansen JS, Sætre GP, Bailey RI. 2014. Evidence for mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species. PLoS Genet 10: e1004075.
doi: 10.1371/journal.pgen.1004075 PMID:24415954
Jensen S, Lynch MD, Ray JL, Neufeld JD, Hovland M. 2015. Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities. Environ Microbiol 17: 3597-609.
doi: 10.1111/1462-2920.12531 PMID:24911121
Rondeau EB, Minkley DR, Leong JS, Messmer AM, Jantzen JR, von Schalburg KR, Lemon C, Bird NH, Koop BF. 2014. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. PLoS One 9: e102089.
doi: 10.1371/journal.pone.0102089 PMID:25069045
Olsen PA, Solberg NT, Lund K, Vehus T, Gelazauskaite M, Wilson SR, Krauss S. 2014. Implications of targeted genomic disruption of β-catenin in BxPC-3 pancreatic adenocarcinoma cells. PLoS One 9: e115496.
doi: 10.1371/journal.pone.0115496 PMID:25536063
Norheim F, Hjorth M, Langleite TM, Lee S, Holen T, Bindesbøll C, Stadheim HK, Gulseth HL, Birkeland KI, Kielland A, Jensen J, Dalen KT, Drevon CA. 2014. Regulation of angiopoietin-like protein 4 production during and after exercise. Physiol Rep 2.
doi: 10.14814/phy2.12109 PMID:25138789
Siddiqui H, Lagesen K, Nederbragt AJ, Eri LM, Jeansson SL, Jakobsen KS. 2014. Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report. Open Microbiol J 8: 148-53.
doi: 10.2174/1874285801408010148 PMID:25685246
Bjerga GE, Hjerde E, De Santi C, Williamson AK, Smalås AO, Willassen NP, Altermark B. 2014. High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway. Stand Genomic Sci 9: 676-86.
doi: 10.4056/sigs.5038901 PMID:25197453
Zakrzewski AC, Weigert A, Helm C, Adamski M, Adamska M, Bleidorn C, Raible F, Hausen H. 2014. Early divergence, broad distribution, and high diversity of animal chitin synthases. Genome Biol Evol 6: 316-25.
doi: 10.1093/gbe/evu011 PMID:24443419
Kjos M, Oppegård C, Diep DB, Nes IF, Veening JW, Nissen-Meyer J, Kristensen T. 2014. Sensitivity to the two-peptide bacteriocin lactococcin G is dependent on UppP, an enzyme involved in cell-wall synthesis. Mol Microbiol 92: 1177-87.
doi: 10.1111/mmi.12632 PMID:24779486
Hahn C, Fromm B, Bachmann L. 2014. Comparative genomics of flatworms (platyhelminthes) reveals shared genomic features of ecto- and endoparastic neodermata. Genome Biol Evol 6: 1105-17.
doi: 10.1093/gbe/evu078 PMID:24732282
Pihlstrøm L, Rengmark A, Bjørnarå KA, Toft M. 2014. Effective variant detection by targeted deep sequencing of DNA pools: an example from Parkinson's disease. Ann Hum Genet 78: 243-52.
doi: 10.1111/ahg.12060 PMID:24660942
Star B, Nederbragt AJ, Hansen MH, Skage M, Gilfillan GD, Bradbury IR, Pampoulie C, Stenseth NC, Jakobsen KS, Jentoft S. 2014. Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA. PLoS One 9: e89676.
doi: 10.1371/journal.pone.0089676 PMID:24608104
Panagopoulos I, Brandal P, Gorunova L, Bjerkehagen B, Heim S. 2014. Novel CSF1-S100A10 fusion gene and CSF1 transcript identified by RNA sequencing in tenosynovial giant cell tumors. Int J Oncol 44: 1425-32.
doi: 10.3892/ijo.2014.2326 PMID:24604026
Micci F, Gorunova L, Gatius S, Matias-Guiu X, Davidson B, Heim S, Panagopoulos I. 2014. MEAF6/PHF1 is a recurrent gene fusion in endometrial stromal sarcoma. Cancer Lett 347: 75-8.
doi: 10.1016/j.canlet.2014.01.030 PMID:24530230
Micci F, Panagopoulos I, Thorsen J, Davidson B, Tropé CG, Heim S. 2014. Low frequency of ESRRA-C11orf20 fusion gene in ovarian carcinomas. PLoS Biol 12: e1001784.
doi: 10.1371/journal.pbio.1001784 PMID:24504521
Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E, Brysting AK, Elven R, Sønstebø JH, Murton J, Sher A, Rasmussen M, Rønn R, Mourier T, Cooper A, Austin J, Möller P, Froese D, Zazula G, Pompanon F, Rioux D, Niderkorn V, Tikhonov A, Savvinov G, Roberts RG, MacPhee RD, Gilbert MT, Kjær KH, Orlando L, Brochmann C, Taberlet P. 2014. Fifty thousand years of Arctic vegetation and megafaunal diet. Nature 506: 47-51.
doi: 10.1038/nature12921 PMID:24499916
Haverkamp TH, Hammer Ø, Jakobsen KS. 2014. Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure. PLoS One 9: e85990.
doi: 10.1371/journal.pone.0085990 PMID:24475066
Blaalid R, Davey ML, Kauserud H, Carlsen T, Halvorsen R, Høiland K, Eidesen PB. 2014. Arctic root-associated fungal community composition reflects environmental filtering. Mol Ecol 23: 649-59.
doi: 10.1111/mec.12622 PMID:24320873
Botnen S, Vik U, Carlsen T, Eidesen PB, Davey ML, Kauserud H. 2014. Low host specificity of root-associated fungi at an Arctic site. Mol Ecol 23: 975-85.
doi: 10.1111/mec.12646 PMID:24382270
Weedon-Fekjær MS, Sheng Y, Sugulle M, Johnsen GM, Herse F, Redman CW, Lyle R, Dechend R, Staff AC. 2014. Placental miR-1301 is dysregulated in early-onset preeclampsia and inversely correlated with maternal circulating leptin. Placenta 35: 709-17.
doi: 10.1016/j.placenta.2014.07.002 PMID:25064070
Pfeifer M, Kugler KG, Sandve SR, Zhan B, Rudi H, Hvidsten TR, Mayer KF, Olsen OA. 2014. Genome interplay in the grain transcriptome of hexaploid bread wheat. Science 345: 1250091.
doi: 10.1126/science.1250091 PMID:25035498
Samarakoon PS, Sorte HS, Kristiansen BE, Skodje T, Sheng Y, Tjønnfjord GE, Stadheim B, Stray-Pedersen A, Rødningen OK, Lyle R. 2014. Identification of copy number variants from exome sequence data. BMC Genomics 15: 661.
doi: 10.1186/1471-2164-15-661 PMID:25102989
Egge ES, Eikrem W, Edvardsen B. 2015. Deep-branching Novel Lineages and High Diversity of Haptophytes in the Skagerrak (Norway) Uncovered by 454 Pyrosequencing. J Eukaryot Microbiol 62: 121-140.
doi: 10.1111/jeu.12157 PMID:25099994
Xiao X, Sogge H, Lagesen K, Tooming-Klunderud A, Jakobsen KS, Rohrlack T. 2014. Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment. PLoS One 9: e106510.
doi: 10.1371/journal.pone.0106510 PMID:25171164
Stormo C, Kringen MK, Lyle R, Olstad OK, Sachse D, Berg JP, Piehler AP. 2014. RNA-sequencing analysis of HepG2 cells treated with atorvastatin. PLoS One 9: e105836.
doi: 10.1371/journal.pone.0105836 PMID:25153832
Håvelsrud OE, Sørum H, Gaustad P. 2014. Genome Sequences of Corynebacterium pseudotuberculosis Strains 48252 (Human, Pneumonia), CS_10 (Lab Strain), Ft_2193/67 (Goat, Pus), and CCUG 27541. Genome Announc 2.
doi: 10.1128/genomeA.00869-14 PMID:25189581
Hagen LH, Vivekanand V, Linjordet R, Pope PB, Eijsink VG, Horn SJ. 2014. Microbial community structure and dynamics during co-digestion of whey permeate and cow manure in continuous stirred tank reactor systems. Bioresour Technol 171: 350-9.
doi: 10.1016/j.biortech.2014.08.095 PMID:25222739
Leininger S, Adamski M, Bergum B, Guder C, Liu J, Laplante M, Bråte J, Hoffmann F, Fortunato S, Jordal S, Rapp HT, Adamska M. 2014. Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans. Nat Commun 5: 3905.
doi: 10.1038/ncomms4905 PMID:24844197
Domman D, Collingro A, Lagkouvardos I, Gehre L, Weinmaier T, Rattei T, Subtil A, Horn M. 2014. Massive expansion of Ubiquitination-related gene families within the Chlamydiae. Mol Biol Evol 31: 2890-904.
doi: 10.1093/molbev/msu227 PMID:25069652
Tveit AT, Urich T, Svenning MM. 2014. Metatranscriptomic analysis of arctic peat soil microbiota. Appl Environ Microbiol 80: 5761-72.
doi: 10.1128/AEM.01030-14 PMID:25015892
Squadrito ML, Baer C, Burdet F, Maderna C, Gilfillan GD, Lyle R, Ibberson M, De Palma M. 2014. Endogenous RNAs modulate microRNA sorting to exosomes and transfer to acceptor cells. Cell Rep 8: 1432-46.
doi: 10.1016/j.celrep.2014.07.035 PMID:25159140
Misceo D, Holmgren A, Louch WE, Holme PA, Mizobuchi M, Morales RJ, De Paula AM, Stray-Pedersen A, Lyle R, Dalhus B, Christensen G, Stormorken H, Tjønnfjord GE, Frengen E. 2014. A dominant STIM1 mutation causes Stormorken syndrome. Hum Mutat 35: 556-64.
doi: 10.1002/humu.22544 PMID:24619930
Siddiqui H, Yoder-Himes DR, Mizgalska D, Nguyen KA, Potempa J, Olsen I. 2014. Genome Sequence of Porphyromonas gingivalis Strain HG66 (DSM 28984). Genome Announc 2.
doi: 10.1128/genomeA.00947-14 PMID:25291768
Solli L, Håvelsrud OE, Horn SJ, Rike AG. 2014. A metagenomic study of the microbial communities in four parallel biogas reactors. Biotechnol Biofuels 7: 146.
doi: 10.1186/s13068-014-0146-2 PMID:25328537
Haugum K, Johansen J, Gabrielsen C, Brandal LT, Bergh K, Ussery DW, Drabløs F, Afset JE. 2014. Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLoS One 9: e111788.
doi: 10.1371/journal.pone.0111788 PMID:25360710
Eldholm V, Norheim G, von der Lippe B, Kinander W, Dahle UR, Caugant DA, Mannsåker T, Mengshoel AT, Dyrhol-Riise AM, Balloux F. 2014. Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient. Genome Biol 15: 490.
doi: 10.1186/s13059-014-0490-3 PMID:25418686
Quick J, Cumley N, Wearn CM, Niebel M, Constantinidou C, Thomas CM, Pallen MJ, Moiemen NS, Bamford A, Oppenheim B, Loman NJ. 2014. Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing. BMJ Open 4: e006278.
doi: 10.1136/bmjopen-2014-006278 PMID:25371418
Li Y, Lee S, Langleite T, Norheim F, Pourteymour S, Jensen J, Stadheim HK, Storås TH, Davanger S, Gulseth HL, Birkeland KI, Drevon CA, Holen T. 2014. Subsarcolemmal lipid droplet responses to a combined endurance and strength exercise intervention. Physiol Rep 2.
doi: 10.14814/phy2.12187 PMID:25413318
Krogvold L, Edwin B, Buanes T, Frisk G, Skog O, Anagandula M, Korsgren O, Undlien D, Eike MC, Richardson SJ, Leete P, Morgan NG, Oikarinen S, Oikarinen M, Laiho JE, Hyöty H, Ludvigsson J, Hanssen KF, Dahl-Jørgensen K. 2015. Detection of a low-grade enteroviral infection in the islets of langerhans of living patients newly diagnosed with type 1 diabetes. Diabetes 64: 1682-7.
doi: 10.2337/db14-1370 PMID:25422108
Panagopoulos I, Gorunova L, Davidson B, Heim S. 2015. Novel TNS3-MAP3K3 and ZFPM2-ELF5 fusion genes identified by RNA sequencing in multicystic mesothelioma with t(7;17)(p12;q23) and t(8;11)(q23;p13). Cancer Lett 357: 502-9.
doi: 10.1016/j.canlet.2014.12.002 PMID:25484136
Fortunato SA, Adamski M, Ramos OM, Leininger S, Liu J, Ferrier DE, Adamska M. 2014. Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Nature 514: 620-3.
doi: 10.1038/nature13881 PMID:25355364
Dees MW, Lysøe E, Nordskog B, Brurberg MB. 2015. Bacterial Communities Associated with Surfaces of Leafy Greens: Shift in Composition and Decrease in Richness over Time. Appl Environ Microbiol 81: 1530-9.
doi: 10.1128/AEM.03470-14 PMID:25527554
Mundra S, Halvorsen R, Kauserud H, Müller E, Vik U, Eidesen PB. 2015. Arctic fungal communities associated with roots of Bistorta vivipara do not respond to the same fine-scale edaphic gradients as the aboveground vegetation. New Phytol 205: 1587-97.
doi: 10.1111/nph.13216 PMID:25483568
Trucchi E, Gratton P, Whittington JD, Cristofari R, Le Maho Y, Stenseth NC, Le Bohec C. 2014. King penguin demography since the last glaciation inferred from genome-wide data. Proc Biol Sci 281.
doi: 10.1098/rspb.2014.0528 PMID:24920481
de Been M, Lanza VF, de Toro M, Scharringa J, Dohmen W, Du Y, Hu J, Lei Y, Li N, Tooming-Klunderud A, Heederik DJ, Fluit AC, Bonten MJ, Willems RJ, de la Cruz F, van Schaik W. 2014. Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages. PLoS Genet 10: e1004776.
doi: 10.1371/journal.pgen.1004776 PMID:25522320
Malde K. 2014. Estimating the information value of polymorphic sites using pooled sequences. BMC Genomics 15: S20.
doi: 10.1186/1471-2164-15-S6-S20 PMID:25571927
Cortesi F, Musilová Z, Stieb SM, Hart NS, Siebeck UE, Malmstrøm M, Tørresen OK, Jentoft S, Cheney KL, Marshall NJ, Carleton KL, Salzburger W. 2015. Ancestral duplications and highly dynamic opsin gene evolution in percomorph fishes. Proc Natl Acad Sci U S A 112: 1493-8.
doi: 10.1073/pnas.1417803112 PMID:25548152
2013
Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S, Nowka B, Richter A, Spieck E, Lebedeva E, Loy A, Wagner M, Daims H. 2014. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environ Microbiol 16: 3055-71.
doi: 10.1111/1462-2920.12300 PMID:24118804
Zhao S, Shalchian-Tabrizi K, Klaveness D. 2013. Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Mol Phylogenet Evol 69: 462-8.
doi: 10.1016/j.ympev.2013.08.005 PMID:23973893
Petri A, Pfeil BE, Oxelman B. 2013. Introgressive hybridization between anciently diverged lineages of Silene (Caryophyllaceae). PLoS One 8: e67729.
doi: 10.1371/journal.pone.0067729 PMID:23861793
Berry D, Stecher B, Schintlmeister A, Reichert J, Brugiroux S, Wild B, Wanek W, Richter A, Rauch I, Decker T, Loy A, Wagner M. 2013. Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing. Proc Natl Acad Sci U S A 110: 4720-5.
doi: 10.1073/pnas.1219247110 PMID:23487774
Avershina E, Storrø O, Øien T, Johnsen R, Pope P, Rudi K. 2014. Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children. FEMS Microbiol Ecol 87: 280-90.
doi: 10.1111/1574-6941.12223 PMID:24112053
Boessenkool S, McGlynn G, Epp LS, Taylor D, Pimentel M, Gizaw A, Nemomissa S, Brochmann C, Popp M. 2014. Use of ancient sedimentary DNA as a novel conservation tool for high-altitude tropical biodiversity. Conserv Biol 28: 446-55.
doi: 10.1111/cobi.12195 PMID:24372820
Hjerde E, Pierechod MM, Williamson AK, Bjerga GE, Willassen NP, Smalås AO, Altermark B. 2013. Draft Genome Sequence of the Actinomycete Rhodococcus sp. Strain AW25M09, Isolated from the Hadsel Fjord, Northern Norway. Genome Announc 1: e0005513.
doi: 10.1128/genomeA.00055-13 PMID:23516194
Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ. 2013. The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. J Exp Zool B Mol Dev Evol 320: 84-93.
doi: 10.1002/jez.b.22485 PMID:23349041
de Muinck EJ, Stenseth NC, Sachse D, Vander Roost J, Rønningen KS, Rudi K, Trosvik P. 2013. Context-dependent competition in a model gut bacterial community. PLoS One 8: e67210.
doi: 10.1371/journal.pone.0067210 PMID:23922635
Panagopoulos I, Gorunova L, Zeller B, Tierens A, Heim S. 2013. Cryptic FUS-ERG fusion identified by RNA-sequencing in childhood acute myeloid leukemia. Oncol Rep 30: 2587-92.
doi: 10.3892/or.2013.2751 PMID:24068373
de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, Rudi K, Stenseth NC, Trosvik P. 2013. Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche. BMC Genomics 14: 81.
doi: 10.1186/1471-2164-14-81 PMID:23384204
Lekva T, Berg JP, Lyle R, Heck A, Ringstad G, Olstad OK, Michelsen AE, Casar-Borota O, Bollerslev J, Ueland T. 2013. Epithelial splicing regulator protein 1 and alternative splicing in somatotroph adenomas. Endocrinology 154: 3331-43.
doi: 10.1210/en.2013-1051 PMID:23825128
Avershina E, Frisli T, Rudi K. 2013. De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data. Microbes Environ 28: 211-6.
doi: 10.1264/jsme2.me12157 PMID:23603801
Egge E, Bittner L, Andersen T, Audic S, de Vargas C, Edvardsen B. 2013. 454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes. PLoS One 8: e74371.
doi: 10.1371/journal.pone.0074371 PMID:24069303
Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2013. Metagenomics in CO2 Monitoring. Energy Procedia 37: 4215-33.
doi: 10.1016/j.egypro.2013.06.324
Lanzén A, Simachew A, Gessesse A, Chmolowska D, Jonassen I, Øvreås L. 2013. Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes. PLoS One 8: e72577.
doi: 10.1371/journal.pone.0072577 PMID:24023625
Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ. 2013. Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection. PLoS One 8: e57543.
doi: 10.1371/journal.pone.0057543 PMID:23472090
Malmstrøm M, Jentoft S, Gregers TF, Jakobsen KS. 2013. Unraveling the evolution of the Atlantic cod's (Gadus morhua L.) alternative immune strategy. PLoS One 8: e74004.
doi: 10.1371/journal.pone.0074004 PMID:24019946
Markussen T, Sindre H, Jonassen CM, Tengs T, Kristoffersen AB, Ramsell J, Numanovic S, Hjortaas MJ, Christiansen DH, Dale OB, Falk K. 2013. Ultra-deep pyrosequencing of partial surface protein genes from infectious Salmon Anaemia virus (ISAV) suggest novel mechanisms involved in transition to virulence. PLoS One 8: e81571.
doi: 10.1371/journal.pone.0081571 PMID:24303056
McLeod A, Brede DA, Rud I, Axelsson L. 2013. Genome Sequence of Lactobacillus sakei subsp. sakei LS25, a Commercial Starter Culture Strain for Fermented Sausage. Genome Announc 1.
doi: 10.1128/genomeA.00475-13 PMID:23846274
Olsvik PA, Hemre GI, Waagbø R. 2013. Exploring early micronutrient deficiencies in rainbow Trout (Oncorhynchus mykiss) by next-generation sequencing technology--from black box to functional genomics. PLoS One 8: e69461.
doi: 10.1371/journal.pone.0069461 PMID:23894486
Olsvik PA, Vikeså V, Lie KK, Hevrøy EM. 2013. Transcriptional responses to temperature and low oxygen stress in Atlantic salmon studied with next-generation sequencing technology. BMC Genomics 14: 817.
doi: 10.1186/1471-2164-14-817 PMID:24261939
Orr RJ, Stüken A, Murray SA, Jakobsen KS. 2013. Evolution and distribution of saxitoxin biosynthesis in dinoflagellates. Mar Drugs 11: 2814-28.
doi: 10.3390/md11082814 PMID:23966031
Panagopoulos I, Micci F, Thorsen J, Haugom L, Buechner J, Kerndrup G, Tierens A, Zeller B, Heim S. 2013. Fusion of ZMYND8 and RELA genes in acute erythroid leukemia. PLoS One 8: e63663.
doi: 10.1371/journal.pone.0063663 PMID:23667654
Star B, Haverkamp TH, Jentoft S, Jakobsen KS. 2013. Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location. BMC Microbiol 13: 248.
doi: 10.1186/1471-2180-13-248 PMID:24206635
Stokke R, Hocking WP, Steinsbu BO, Steen IH. 2013. Complete Genome Sequence of the Thermophilic and Facultatively Chemolithoautotrophic Sulfate Reducer Archaeoglobus sulfaticallidus Strain PM70-1T. Genome Announc 1.
doi: 10.1128/genomeA.00406-13 PMID:23833130
Vik U, Logares R, Blaalid R, Halvorsen R, Carlsen T, Bakke I, Kolstø AB, Økstad OA, Kauserud H. 2013. Different bacterial communities in ectomycorrhizae and surrounding soil. Sci Rep 3: 3471.
doi: 10.1038/srep03471 PMID:24326907
Orr RJ, Stüken A, Murray SA, Jakobsen KS. 2013. Evolutionary acquisition and loss of saxitoxin biosynthesis in dinoflagellates: the second "core" gene, sxtG. Appl Environ Microbiol 79: 2128-36.
doi: 10.1128/AEM.03279-12 PMID:23335767
Panagopoulos I, Thorsen J, Gorunova L, Micci F, Haugom L, Davidson B, Heim S. 2013. RNA sequencing identifies fusion of the EWSR1 and YY1 genes in mesothelioma with t(14;22)(q32;q12). Genes Chromosomes Cancer 52: 733-40.
doi: 10.1002/gcc.22068 PMID:23630070
Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L. 2013. Substantial loss of conserved and gain of novel MicroRNA families in flatworms. Mol Biol Evol 30: 2619-28.
doi: 10.1093/molbev/mst155 PMID:24025793
Uzelac G, Kojic M, Lozo J, Aleksandrzak-Piekarczyk T, Gabrielsen C, Kristensen T, Nes IF, Diep DB, Topisirovic L. 2013. A Zn-dependent metallopeptidase is responsible for sensitivity to LsbB, a class II leaderless bacteriocin of Lactococcus lactis subsp. lactis BGMN1-5. J Bacteriol 195: 5614-21.
doi: 10.1128/JB.00859-13 PMID:24123824
Müller AL, de Rezende JR, Hubert CR, Kjeldsen KU, Lagkouvardos I, Berry D, Jørgensen BB, Loy A. 2014. Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents. ISME J 8: 1153-65.
doi: 10.1038/ismej.2013.225 PMID:24351936
Brembu T, Winge P, Tooming-Klunderud A, Nederbragt AJ, Jakobsen KS, Bones AM. 2014. The chloroplast genome of the diatom Seminavis robusta: new features introduced through multiple mechanisms of horizontal gene transfer. Mar Genomics 16: 17-27.
doi: 10.1016/j.margen.2013.12.002 PMID:24365712
Liu B, Frostegård A, Shapleigh JP. 2013. Draft genome sequences of five strains in the genus thauera. Genome Announc 1.
doi: 10.1128/genomeA.00052-12 PMID:23405361
Panagopoulos I, Thorsen J, Gorunova L, Haugom L, Bjerkehagen B, Davidson B, Heim S, Micci F. 2013. Fusion of the ZC3H7B and BCOR genes in endometrial stromal sarcomas carrying an X;22-translocation. Genes Chromosomes Cancer 52: 610-8.
doi: 10.1002/gcc.22057 PMID:23580382
Yamamoto ML, Maier I, Dang AT, Berry D, Liu J, Ruegger PM, Yang JI, Soto PA, Presley LL, Reliene R, Westbrook AM, Wei B, Loy A, Chang C, Braun J, Borneman J, Schiestl RH. 2013. Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity. Cancer Res 73: 4222-32.
doi: 10.1158/0008-5472.CAN-13-0022 PMID:23860718
Eme L, Reigstad LJ, Spang A, Lanzén A, Weinmaier T, Rattei T, Schleper C, Brochier-Armanet C. 2013. Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota. Res Microbiol 164: 425-38.
doi: 10.1016/j.resmic.2013.02.006 PMID:23470515
Lindner DL, Carlsen T, Henrik Nilsson R, Davey M, Schumacher T, Kauserud H. 2013. Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi. Ecol Evol 3: 1751-64.
doi: 10.1002/ece3.586 PMID:23789083
Olsvik PA, Berg V, Lyche JL. 2013. Transcriptional profiling in burbot (Lota lota) from Lake Mjøsa--a Norwegian Lake contaminated by several organic pollutants. Ecotoxicol Environ Saf 92: 94-103.
doi: 10.1016/j.ecoenv.2013.02.019 PMID:23582132
Blaalid R, Kumar S, Nilsson RH, Abarenkov K, Kirk PM, Kauserud H. 2013. ITS1 versus ITS2 as DNA metabarcodes for fungi. Mol Ecol Resour 13: 218-24.
doi: 10.1111/1755-0998.12065 PMID:23350562
Peña-Diaz J, Hegre SA, Anderssen E, Aas PA, Mjelle R, Gilfillan GD, Lyle R, Drabløs F, Krokan HE, Sætrom P. 2013. Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Nucleic Acids Res 41: 2846-56.
doi: 10.1093/nar/gks1336 PMID:23325852
Hagen IJ, Billing AM, Rønning B, Pedersen SA, Pärn H, Slate J, Jensen H. 2013. The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus). Mol Ecol Resour 13: 429-39.
doi: 10.1111/1755-0998.12088 PMID:23480404
Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS. 2013. From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains. Appl Environ Microbiol 79: 6803-12.
doi: 10.1128/AEM.01455-13 PMID:23995927
Yao F, Vik U, Brysting AK, Carlsen T, Halvorsen R, Kauserud H. 2013. Substantial compositional turnover of fungal communities in an alpine ridge-to-snowbed gradient. Mol Ecol 22: 5040-52.
doi: 10.1111/mec.12437 PMID:23962113
Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ. 2013. Profiling microRNA expression in bovine alveolar macrophages using RNA-seq. Vet Immunol Immunopathol 155: 238-44.
doi: 10.1016/j.vetimm.2013.08.004 PMID:24021155
Liang Z, Demko V, Wilson RC, Johnson KA, Ahmad R, Perroud PF, Quatrano R, Zhao S, Shalchian-Tabrizi K, Otegui MS, Olsen OA, Johansen W. 2013. The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. Plant J 75: 742-54.
doi: 10.1111/tpj.12235 PMID:23663131
Urich T, Lanzén A, Stokke R, Pedersen RB, Bayer C, Thorseth IH, Schleper C, Steen IH, Ovreas L. 2014. Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics. Environ Microbiol 16: 2699-710.
doi: 10.1111/1462-2920.12283 PMID:24112684
Præsteng KE, Pope PB, Cann IK, Mackie RI, Mathiesen SD, Folkow LP, Eijsink VG, Sundset MA. 2013. Probiotic dosing of Ruminococcus flavefaciens affects rumen microbiome structure and function in reindeer. Microb Ecol 66: 840-9.
doi: 10.1007/s00248-013-0279-z PMID:23959114
2012
Logares R, Lindström ES, Langenheder S, Logue JB, Paterson H, Laybourn-Parry J, Rengefors K, Tranvik L, Bertilsson S. 2013. Biogeography of bacterial communities exposed to progressive long-term environmental change. ISME J 7: 937-48.
doi: 10.1038/ismej.2012.168 PMID:23254515
Sokol L, Cripe L, Kantarjian H, Sekeres MA, Parmar S, Greenberg P, Goldberg SL, Bhushan V, Shammo J, Hohl R, Verma A, Garcia-Manero G, Li YP, Lowe A, Zhu J, List AF. 2013. Randomized, dose-escalation study of the p38α MAPK inhibitor SCIO-469 in patients with myelodysplastic syndrome. Leukemia 27: 977-80.
doi: 10.1038/leu.2012.264 PMID:23032694
Voso MT, Fabiani E, Fianchi L, Falconi G, Criscuolo M, Santangelo R, Chiusolo P, Betti S, D'Alo' F, Hohaus S, De Stefano V, Leone G. 2013. Mutations of epigenetic regulators and of the spliceosome machinery in therapy-related myeloid neoplasms and in acute leukemias evolved from chronic myeloproliferative diseases. Leukemia 27: 982-5.
doi: 10.1038/leu.2012.267 PMID:22964944
Micci F, Thorsen J, Panagopoulos I, Nyquist KB, Zeller B, Tierens A, Heim S. 2013. High-throughput sequencing identifies an NFIA/CBFA2T3 fusion gene in acute erythroid leukemia with t(1;16)(p31;q24). Leukemia 27: 980-2.
doi: 10.1038/leu.2012.266 PMID:23032695
Moen B, Rudi K, Bore E, Langsrud S. 2012. Subminimal inhibitory concentrations of the disinfectant benzalkonium chloride select for a tolerant subpopulation of Escherichia coli with inheritable characteristics. Int J Mol Sci 13: 4101-23.
doi: 10.3390/ijms13044101 PMID:22605968
Rudi K, Moen B, Sekelja M, Frisli T, Lee MR. 2012. An eight-year investigation of bovine livestock fecal microbiota. Vet Microbiol 160: 369-77.
doi: 10.1016/j.vetmic.2012.06.003 PMID:22749759
Heggeset TM, Krog A, Balzer S, Wentzel A, Ellingsen TE, Brautaset T. 2012. Genome sequence of thermotolerant Bacillus methanolicus: features and regulation related to methylotrophy and production of L-lysine and L-glutamate from methanol. Appl Environ Microbiol 78: 5170-81.
doi: 10.1128/AEM.00703-12 PMID:22610424
Farup PG, Jacobsen M, Ligaarden SC, Rudi K. 2012. Probiotics, symptoms, and gut microbiota: what are the relations? A randomized controlled trial in subjects with irritable bowel syndrome. Gastroenterol Res Pract 2012: 214102.
doi: 10.1155/2012/214102 PMID:22899904
Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H. 2012. Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches. J Microbiol Methods 91: 106-13.
doi: 10.1016/j.mimet.2012.07.017 PMID:22849829
Blaalid R, Carlsen T, Kumar S, Halvorsen R, Ugland KI, Fontana G, Kauserud H. 2012. Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing. Mol Ecol 21: 1897-908.
doi: 10.1111/j.1365-294x.2011.05214.x PMID:22590726
Fortunato S, Adamski M, Bergum B, Guder C, Jordal S, Leininger S, Zwafink C, Rapp HT, Adamska M. 2012. Genome-wide analysis of the sox family in the calcareous sponge Sycon ciliatum: multiple genes with unique expression patterns. Evodevo 3: 14.
doi: 10.1186/2041-9139-3-14 PMID:22824100
Bellemain E, Davey ML, Kauserud H, Epp LS, Boessenkool S, Coissac E, Geml J, Edwards M, Willerslev E, Gussarova G, Taberlet P, Haile J, Brochmann C. 2013. Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environ Microbiol 15: 1176-89.
doi: 10.1111/1462-2920.12020 PMID:23171292
Bråte J, Krabberød AK, Dolven JK, Ose RF, Kristensen T, Bjørklund KR, Shalchian-Tabrizi K. 2012. Radiolaria associated with large diversity of marine alveolates. Protist 163: 767-77.
doi: 10.1016/j.protis.2012.04.004 PMID:22658831
Carlsen T, Aas AB, Lindner D, Vrålstad T, Schumacher T, Kauserud H. 2012. Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?. Fungal Ecology 5: 747-9.
doi: 10.1016/j.funeco.2012.06.003
Epp LS, Boessenkool S, Bellemain EP, Haile J, Esposito A, Riaz T, Erséus C, Gusarov VI, Edwards ME, Johnsen A, Stenøien HK, Hassel K, Kauserud H, Yoccoz NG, Bråthen KA, Willerslev E, Taberlet P, Coissac E, Brochmann C. 2012. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol Ecol 21: 1821-33.
doi: 10.1111/j.1365-294X.2012.05537.x PMID:22486821
Espelund M, Minge MA, Gabrielsen TM, Nederbragt AJ, Shalchian-Tabrizi K, Otis C, Turmel M, Lemieux C, Jakobsen KS. 2012. Genome fragmentation is not confined to the peridinin plastid in dinoflagellates. PLoS One 7: e38809.
doi: 10.1371/journal.pone.0038809 PMID:22719952
Frisli T, Haverkamp TH, Jakobsen KS, Stenseth NC, Rudi K. 2013. Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data. J Appl Microbiol 114: 141-51.
doi: 10.1111/jam.12035 PMID:23039191
Hamfjord J, Stangeland AM, Hughes T, Skrede ML, Tveit KM, Ikdahl T, Kure EH. 2012. Differential expression of miRNAs in colorectal cancer: comparison of paired tumor tissue and adjacent normal mucosa using high-throughput sequencing. PLoS One 7: e34150.
doi: 10.1371/journal.pone.0034150 PMID:22529906
Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2012. Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea. BMC Microbiol 12: 203.
doi: 10.1186/1471-2180-12-203 PMID:22966776
Jaeschke A, Jørgensen SL, Bernasconi SM, Pedersen RB, Thorseth IH, Früh-Green GL. 2012. Microbial diversity of Loki's Castle black smokers at the Arctic Mid-Ocean Ridge. Geobiology 10: 548-61.
doi: 10.1111/gbi.12009 PMID:23006788
Ougland R, Lando D, Jonson I, Dahl JA, Moen MN, Nordstrand LM, Rognes T, Lee JT, Klungland A, Kouzarides T, Larsen E. 2012. ALKBH1 is a histone H2A dioxygenase involved in neural differentiation. Stem Cells 30: 2672-82.
doi: 10.1002/stem.1228 PMID:22961808
Radax R, Rattei T, Lanzen A, Bayer C, Rapp HT, Urich T, Schleper C. 2012. Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. Environ Microbiol 14: 1308-24.
doi: 10.1111/j.1462-2920.2012.02714.x PMID:22364353
Sorte H, Mørkrid L, Rødningen O, Kulseth MA, Stray-Pedersen A, Matthijs G, Race V, Houge G, Fiskerstrand T, Bjurulf B, Lyle R, Prescott T. 2012. Severe ALG8-CDG (CDG-Ih) associated with homozygosity for two novel missense mutations detected by exome sequencing of candidate genes. Eur J Med Genet 55: 196-202.
doi: 10.1016/j.ejmg.2012.01.003 PMID:22306853
Squadrito ML, Pucci F, Magri L, Moi D, Gilfillan GD, Ranghetti A, Casazza A, Mazzone M, Lyle R, Naldini L, De Palma M. 2012. miR-511-3p modulates genetic programs of tumor-associated macrophages. Cell Rep 1: 141-54.
doi: 10.1016/j.celrep.2011.12.005 PMID:22832163
Roalkvam I, Dahle H, Chen Y, Jørgensen SL, Haflidason H, Steen IH. 2012. Fine-Scale Community Structure Analysis of ANME in Nyegga Sediments with High and Low Methane Flux. Front Microbiol 3: 216.
doi: 10.3389/fmicb.2012.00216 PMID:22715336
Gabrielsen C, Brede DA, Hernández PE, Nes IF, Diep DB. 2012. Genome sequence of the bacteriocin-producing strain Lactococcus garvieae DCC43. J Bacteriol 194: 6976-7.
doi: 10.1128/JB.01864-12 PMID:23209230
Jørgensen MH, Lagesen K, Mable BK, Brysting AK. 2012. Using high-throughput sequencing to investigate the evolution of self-incompatibility genes in the Brassicaceae: strategies and challenges. Plant Ecology & Diversity 5: 473-84.
doi: 10.1080/17550874.2012.748098
Straub T, Zabel A, Gilfillan GD, Feller C, Becker PB. 2013. Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq. Genome Res 23: 473-85.
doi: 10.1101/gr.146407.112 PMID:23233545
Robertson AB, Dahl JA, Ougland R, Klungland A. 2012. Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads. Nat Protoc 7: 340-50.
doi: 10.1038/nprot.2011.443 PMID:22281869
Undlien DE. 2012. Individuell genomsekvensering. Tidsskr Nor Laegeforen 132: 264.
doi: 10.4045/tidsskr.11.1490 PMID:22314723
Zhao S, Burki F, Bråte J, Keeling PJ, Klaveness D, Shalchian-Tabrizi K. 2012. Collodictyon--an ancient lineage in the tree of eukaryotes. Mol Biol Evol 29: 1557-68.
doi: 10.1093/molbev/mss001 PMID:22319147
Bengtsson MM, Sjøtun K, Lanzén A, Ovreås L. 2012. Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea. ISME J 6: 2188-98.
doi: 10.1038/ismej.2012.67 PMID:22763650
Stokke R, Roalkvam I, Lanzen A, Haflidason H, Steen IH. 2012. Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments. Environ Microbiol 14: 1333-46.
doi: 10.1111/j.1462-2920.2012.02716.x PMID:22404914
Sogge H, Rohrlack T, Rounge TB, Sønstebø JH, Tooming-Klunderud A, Kristensen T, Jakobsen KS. 2013. Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix freshwater strains. Appl Environ Microbiol 79: 508-15.
doi: 10.1128/AEM.02417-12 PMID:23124237
Sridhar S, Sharma A, Kongshaug H, Nilsen F, Jonassen I. 2012. Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity. BMC Genomics 13: 598.
doi: 10.1186/1471-2164-13-598 PMID:23131096
Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C. 2013. Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Mol Ecol 22: 87-101.
doi: 10.1111/mec.12108 PMID:23163508
Gilfillan GD, Hughes T, Sheng Y, Hjorthaug HS, Straub T, Gervin K, Harris JR, Undlien DE, Lyle R. 2012. Limitations and possibilities of low cell number ChIP-seq. BMC Genomics 13: 645.
doi: 10.1186/1471-2164-13-645 PMID:23171294
Davey ML, Heegaard E, Halvorsen R, Kauserud H, Ohlson M. 2013. Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient. Mol Ecol 22: 368-83.
doi: 10.1111/mec.12122 PMID:23190367
Jorgensen SL, Hannisdal B, Lanzén A, Baumberger T, Flesland K, Fonseca R, Ovreås L, Steen IH, Thorseth IH, Pedersen RB, Schleper C. 2012. Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge. Proc Natl Acad Sci U S A 109: E2846-55.
doi: 10.1073/pnas.1207574109 PMID:23027979
Davey ML, Heegaard E, Halvorsen R, Ohlson M, Kauserud H. 2012. Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing. New Phytol 195: 844-56.
doi: 10.1111/j.1469-8137.2012.04215.x PMID:22758207
Leidenroth A, Sorte HS, Gilfillan G, Ehrlich M, Lyle R, Hewitt JE. 2012. Diagnosis by sequencing: correction of misdiagnosis from FSHD2 to LGMD2A by whole-exome analysis. Eur J Hum Genet 20: 999-1003.
doi: 10.1038/ejhg.2012.42 PMID:22378277
Tveit A, Schwacke R, Svenning MM, Urich T. 2013. Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms. ISME J 7: 299-311.
doi: 10.1038/ismej.2012.99 PMID:22955232
Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS. 2012. Alterations of microbiota in urine from women with interstitial cystitis. BMC Microbiol 12: 205.
doi: 10.1186/1471-2180-12-205 PMID:22974186
Nordstrand LM, Furu K, Paulsen J, Rognes T, Klungland A. 2012. Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nucleic Acids Res 40: 10950-63.
doi: 10.1093/nar/gks839 PMID:22965116
2011
Høvik H, Yu WH, Olsen I, Chen T. 2012. Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83. J Bacteriol 194: 100-14.
doi: 10.1128/JB.06385-11 PMID:22037400
Pester M, Rattei T, Flechl S, Gröngröft A, Richter A, Overmann J, Reinhold-Hurek B, Loy A, Wagner M. 2012. amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions. Environ Microbiol 14: 525-39.
doi: 10.1111/j.1462-2920.2011.02666.x PMID:22141924
Shalchian-Tabrizi K, Reier-Røberg K, Ree DK, Klaveness D, Bråte J. 2011. Marine-freshwater colonizations of haptophytes inferred from phylogeny of environmental 18S rDNA sequences. J Eukaryot Microbiol 58: 315-8.
doi: 10.1111/j.1550-7408.2011.00547.x PMID:21518078
Sodeland M, Grove H, Kent M, Taylor S, Svendsen M, Hayes BJ, Lien S. 2011. Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle. BMC Genet 12: 70.
doi: 10.1186/1471-2156-12-70 PMID:21835015
Klaveness D, Bråte J, Patil V, Shalchian-Tabrizi K, Kluge R, Gislerød HR, Jakobsen KS. 2011. The 18S and 28S rDNA identity and phylogeny of the common lotic chrysophyte. European Journal of Phycology 46: 282-91.
doi: 10.1080/09670262.2011.598950
Kauserud H, Kumar S, Brysting AK, Nordén J, Carlsen T. 2012. High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples. Mycorrhiza 22: 309-15.
doi: 10.1007/s00572-011-0403-1 PMID:21779811
Boessenkool S, Epp LS, Haile J, Bellemain E, Edwards M, Coissac E, Willerslev E, Brochmann C. 2012. Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA. Mol Ecol 21: 1806-15.
doi: 10.1111/j.1365-294X.2011.05306.x PMID:21988749
Lindqvist M, Isaksson B, Grub C, Jonassen TØ, Hällgren A. 2012. Detection and characterisation of SCCmec remnants in multiresistant methicillin-susceptible Staphylococcus aureus causing a clonal outbreak in a Swedish county. Eur J Clin Microbiol Infect Dis 31: 141-7.
doi: 10.1007/s10096-011-1286-y PMID:21590357
Selmer KK, Gilfillan GD, Strømme P, Lyle R, Hughes T, Hjorthaug HS, Brandal K, Nakken S, Misceo D, Egeland T, Munthe LA, Braekken SK, Undlien DE. 2012. A mild form of Mucopolysaccharidosis IIIB diagnosed with targeted next-generation sequencing of linked genomic regions. Eur J Hum Genet 20: 58-63.
doi: 10.1038/ejhg.2011.126 PMID:21712855
Danielsson M, Lundén K, Elfstrand M, Hu J, Zhao T, Arnerup J, Ihrmark K, Swedjemark G, Borg-Karlson AK, Stenlid J. 2011. Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection. BMC Plant Biol 11: 154.
doi: 10.1186/1471-2229-11-154 PMID:22067529
Gabrielsen TM, Minge MA, Espelund M, Tooming-Klunderud A, Patil V, Nederbragt AJ, Otis C, Turmel M, Shalchian-Tabrizi K, Lemieux C, Jakobsen KS. 2011. Genome evolution of a tertiary dinoflagellate plastid. PLoS One 6: e19132.
doi: 10.1371/journal.pone.0019132 PMID:21541332
Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2011. A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments. BMC Microbiol 11: 221.
doi: 10.1186/1471-2180-11-221 PMID:21970369
Kumar S, Carlsen T, Mevik BH, Enger P, Blaalid R, Shalchian-Tabrizi K, Kauserud H. 2011. CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics 12: 182.
doi: 10.1186/1471-2105-12-182 PMID:21599929
Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS. 2011. Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons. BMC Microbiol 11: 244.
doi: 10.1186/1471-2180-11-244 PMID:22047020
Stüken A, Orr RJ, Kellmann R, Murray SA, Neilan BA, Jakobsen KS. 2011. Discovery of nuclear-encoded genes for the neurotoxin saxitoxin in dinoflagellates. PLoS One 6: e20096.
doi: 10.1371/journal.pone.0020096 PMID:21625593
Kotlar HK, Lewin A, Johansen J, Throne-Holst M, Haverkamp T, Markussen S, Winnberg A, Ringrose P, Aakvik T, Ryeng E, Jakobsen K, Drabløs F, Valla S. 2011. High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environ Microbiol Rep 3: 674-81.
doi: 10.1111/j.1758-2229.2011.00279.x PMID:23761356
Logue JB, Langenheder S, Andersson AF, Bertilsson S, Drakare S, Lanzén A, Lindström ES. 2012. Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships. ISME J 6: 1127-36.
doi: 10.1038/ismej.2011.184 PMID:22170419
Hildahl J, Sandvik GK, Edvardsen RB, Fagernes C, Norberg B, Haug TM, Weltzien FA. 2011. Identification and gene expression analysis of three GnRH genes in female Atlantic cod during puberty provides insight into GnRH variant gene loss in fish. Gen Comp Endocrinol 172: 458-67.
doi: 10.1016/j.ygcen.2011.04.010 PMID:21521645
Berry D, Ben Mahfoudh K, Wagner M, Loy A. 2011. Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Appl Environ Microbiol 77: 7846-9.
doi: 10.1128/AEM.05220-11 PMID:21890669
Roalkvam I, Jørgensen SL, Chen Y, Stokke R, Dahle H, Hocking WP, Lanzén A, Haflidason H, Steen IH. 2011. New insight into stratification of anaerobic methanotrophs in cold seep sediments. FEMS Microbiol Ecol 78: 233-43.
doi: 10.1111/j.1574-6941.2011.01153.x PMID:21676010
Lanzén A, Jørgensen SL, Bengtsson MM, Jonassen I, Øvreås L, Urich T. 2011. Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA. FEMS Microbiol Ecol 77: 577-89.
doi: 10.1111/j.1574-6941.2011.01138.x PMID:21627670
Hildahl J, Sandvik GK, Edvardsen RB, Norberg B, Haug TM, Weltzien FA. 2011. Four gonadotropin releasing hormone receptor genes in Atlantic cod are differentially expressed in the brain and pituitary during puberty. Gen Comp Endocrinol 173: 333-45.
doi: 10.1016/j.ygcen.2011.06.002 PMID:21704626
Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS. 2011. The genome sequence of Atlantic cod reveals a unique immune system. Nature 477: 207-10.
doi: 10.1038/nature10342 PMID:21832995
2010
Løvoll M, Wiik-Nielsen J, Grove S, Wiik-Nielsen CR, Kristoffersen AB, Faller R, Poppe T, Jung J, Pedamallu CS, Nederbragt AJ, Meyerson M, Rimstad E, Tengs T. 2010. A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS). Virol J 7: 309.
doi: 10.1186/1743-422X-7-309 PMID:21067578
Lukacs MF, Harstad H, Bakke HG, Beetz-Sargent M, McKinnel L, Lubieniecki KP, Koop BF, Grimholt U. 2010. Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon. BMC Genomics 11: 154.
doi: 10.1186/1471-2164-11-154 PMID:20205726
Nederbragt AJ, Rounge TB, Kausrud KL, Jakobsen KS. 2010. Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads. Sequencing 2010: 1-12.
doi: 10.1155/2010/782465
Wetten OF, Nederbragt AJ, Wilson RC, Jakobsen KS, Edvardsen RB, Andersen Ø. 2010. Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters. BMC Evol Biol 10: 315.
doi: 10.1186/1471-2148-10-315 PMID:20961401
Stüken A, Jakobsen KS. 2010. The cylindrospermopsin gene cluster of Aphanizomenon sp. strain 10E6: organization and recombination. Microbiology 156: 2438-51.
doi: 10.1099/mic.0.036988-0 PMID:20430808
Bråte J, Logares R, Berney C, Ree DK, Klaveness D, Jakobsen KS, Shalchian-Tabrizi K. 2010. Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. ISME J 4: 1144-53.
doi: 10.1038/ismej.2010.39 PMID:20393574
2009
Jørgensen H, Degnes KF, Dikiy A, Fjaervik E, Klinkenberg G, Zotchev SB. 2010. Insights into the evolution of macrolactam biosynthesis through cloning and comparative analysis of the biosynthetic gene cluster for a novel macrocyclic lactam, ML-449. Appl Environ Microbiol 76: 283-93.
doi: 10.1128/AEM.00744-09 PMID:19854930
Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K. 2009. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol 1: 231-8.
doi: 10.1093/gbe/evp022 PMID:20333193
Rounge TB, Rohrlack T, Nederbragt AJ, Kristensen T, Jakobsen KS. 2009. A genome-wide analysis of nonribosomal peptide synthetase gene clusters and their peptides in a Planktothrix rubescens strain. BMC Genomics 10: 396.
doi: 10.1186/1471-2164-10-396 PMID:19706155
Tengs T, Zhang H, Holst-Jensen A, Bohlin J, Butenko MA, Kristoffersen AB, Sorteberg HG, Berdal KG. 2009. Characterization of unknown genetic modifications using high throughput sequencing and computational subtraction. BMC Biotechnol 9: 87.
doi: 10.1186/1472-6750-9-87 PMID:19814792
Jørgensen H, Degnes KF, Sletta H, Fjaervik E, Dikiy A, Herfindal L, Bruheim P, Klinkenberg G, Bredholt H, Nygård G, Døskeland SO, Ellingsen TE, Zotchev SB. 2009. Biosynthesis of macrolactam BE-14106 involves two distinct PKS systems and amino acid processing enzymes for generation of the aminoacyl starter unit. Chem Biol 16: 1109-21.
doi: 10.1016/j.chembiol.2009.09.014 PMID:19875084