Publications

 

  
 

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2022

Dahle SW, Attramadal KJ, Vadstein O, Hestdahl HI, Bakke I. 2022. Microbial community dynamics in a commercial RAS for production of Atlantic salmon fry (Salmo salar). Aquaculture 546: 737382.
doi: 10.1016/j.aquaculture.2021.737382

 

2021

Yao Y, Wyrozżemski Ł, Lundin KEA, Sandve GK, Qiao SW. 2021. Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq. PLoS One 16: e0258029.
doi: 10.1371/journal.pone.0258029 PMID:34618841

Karlsen TR, Kong XY, Holm S, Quiles-Jiménez A, Dahl TB, Yang K, Sagen EL, Skarpengland T, S Øgaard JD, Holm K, Vestad B, Olsen MB, Aukrust P, Bjørås M, Hov JR, Halvorsen B, Gregersen I. 2021. NEIL3-deficiency increases gut permeability and contributes to a pro-atherogenic metabolic phenotype. Sci Rep 11: 19749.
doi: 10.1038/s41598-021-98820-0 PMID:34611194

Andresen AM, Gjøen T. 2021. Chitosan nanoparticle formulation attenuates poly (I:C) induced innate immune responses against inactivated virus vaccine in Atlantic salmon (Salmo salar). Comparative Biochemistry and Physiology Part D: Genomics and Proteomics.
doi: 10.1016/j.cbd.2021.100915

Osnes MN, Alfsnes K, Bråte J, Llorente IG, Riis RK, Instefjord KH, Elshaug H, Vollan HS, Moen LV, Pedersen BN, Caugant DA, Stene-Johansen K, Hungnes O, Bragstad K, Brynildsrud O, Eldholm V. 2021. The Impact of Global Lineage Dynamics, Border Restrictions and Emergence of the B.1.1.7 Lineage on the SARS-CoV-2 Epidemic in Norway. .
doi: 10.1093/ve/veab086

Grevskott DH, Ghavidel FZ, Svanevik CS, Marathe NP. 2021. Resistance profiles and diversity of β-lactamases in Escherichia coli strains isolated from city-scale sewage surveillance in Bergen, Norway mimic clinical prevalence. Ecotoxicol Environ Saf 226: 112788.
doi: 10.1016/j.ecoenv.2021.112788 PMID:34571418

Camacho E, González-de la Fuente S, Solana JC, Rastrojo A, Carrasco-Ramiro F, Requena JM, Aguado B. 2021. Gene Annotation and Transcriptome Delineation on a De Novo Genome Assembly for the Reference Leishmania major Friedlin Strain. Genes 12: 1359.
doi: 10.3390/genes12091359

Dichter AA, Schultze TG, Wenigmann A, Ballhorn W, Latz A, Schlüfter E, Ventosilla P, Guerra Allison H, Ugarte-Gil C, Tsukayama P, Kempf VA. 2021. Identification of immunodominant Bartonella bacilliformis proteins: a combined in-silico and serology approach. The Lancet Microbe.
doi: 10.1016/S2666-5247(21)00184-1

Lo Cascio Sætre C, Eroukhmanoff F, Rönkä K, Kluen E, Thorogood R, Torrance J, Tracey A, Chow W, Pelan S, Howe K, Jakobsen KS, Tørresen OK. 2021. A Chromosome-Level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus). Genome Biol Evol.
doi: 10.1093/gbe/evab212 PMID:34499122

ter Schure AT, Bajard M, Loftsgarden K, Høeg HI, Ballo E, Bakke J, Støren EW, Iversen F, Kool A, Brysting AK, Krüger K, Boessenkool S. 2021. Anthropogenic and environmental drivers of vegetation change in southeastern Norway during the Holocene. Quaternary Science Reviews 270: 107175.
doi: 10.1016/j.quascirev.2021.107175

Lofthus S, Bakke I, Greer CW, Brakstad OG. 2021. Biodegradation of weathered crude oil by microbial communities in solid and melted sea ice. Mar Pollut Bull 172: 112823.
doi: 10.1016/j.marpolbul.2021.112823 PMID:34454387

Neby M, Kamenova S, Devineau O, Ims RA, Soininen EM. 2021. Issues of under-representation in quantitative DNA metabarcoding weaken the inference about diet of the tundra vole. 9: e11936.
doi: 10.7717/peerj.11936

Storesund JE, Grevskott DH, Marathe NP, Lunestad BT, Svanevik CS. 2021. Draft Genome Sequence of Hafnia paralvei Strain VBC_1714, Isolated from Frozen Cod Fillet Imported from Russia to Norway. Microbiol Resour Announc 10: e0062421.
doi: 10.1128/MRA.00624-21 PMID:34410149

Hajdarevic R, Lande A, Rekeland I, Rydland A, Strand EB, Sosa DD, Creary LE, Mella O, Egeland T, Saugstad OD, Fluge Ø, Lie BA, Viken MK. 2021. Fine mapping of the major histocompatibility complex (MHC) in myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) suggests involvement of both HLA class I and class II loci. Brain Behav Immun.
doi: 10.1016/j.bbi.2021.08.219 PMID:34403736

Marathe NP, Svanevik CS, Ghavidel FZ, Grevskott DH. 2021. First report of mobile tigecycline resistance gene tet(X4)-harboring multidrug-resistant Escherichia coli from wastewater in Norway. J Glob Antimicrob Resist.
doi: 10.1016/j.jgar.2021.07.019 PMID:34371242

Lanzén A, Dahlgren TG, Bagi A, Hestetun JT. 2021. Benthic eDNA metabarcoding provides accurate assessments of impact from oil extraction, and ecological insights. Ecological Indicators 130: 108064.
doi: 10.1016/j.ecolind.2021.108064

Akkouh IA, Hribkova H, Grabiec M, Budinska E, Szabo A, Kasparek T, Andreassen OA, Sun YM, Djurovic S. 2021. Derivation and Molecular Characterization of a Morphological Subpopulation of Human iPSC Astrocytes Reveal a Potential Role in Schizophrenia and Clozapine Response. Schizophr Bull.
doi: 10.1093/schbul/sbab092 PMID:34357384

Ottoni C, Borić D, Cheronet O, Sparacello V, Dori I, Coppa A, Antonović D, Vujević D, Price TD, Pinhasi R, Cristiani E. 2021. Tracking the transition to agriculture in Southern Europe through ancient DNA analysis of dental calculus. Proc Natl Acad Sci U S A 118.
doi: 10.1073/pnas.2102116118 PMID:34312252

Awoyemi A, Mayerhofer C, Felix AS, Hov JR, Moscavitch SD, Lappegård KT, Hovland A, Halvorsen S, Halvorsen B, Gregersen I, Svardal A, Berge RK, Hansen SH, Götz A, Holm K, Aukrust P, Åkra S, Seljeflot I, Solheim S, Lorenzo A, Gullestad L, Trøseid M, Broch K. 2021. Rifaximin or Saccharomyces boulardii in heart failure with reduced ejection fraction: Results from the randomized GutHeart trial. EBioMedicine 70: 103511.
doi: 10.1016/j.ebiom.2021.103511 PMID:34329947

Viste R, Lie BA, Viken MK, Rootwelt T, Knudsen-Heier S, Kornum BR. 2021. Narcolepsy type 1 patients have lower levels of effector memory CD4+ T cells compared to their siblings when controlling for H1N1-(PandemrixTM)-vaccination and HLA DQB1*06:02 status. Sleep Medicine.
doi: 10.1016/j.sleep.2021.07.024

Herstad KMV, Trosvik P, Haaland AH, Haverkamp THA, de Muinck EJ, Skancke E. 2021. Changes in the fecal microbiota in dogs with acute hemorrhagic diarrhea during an outbreak in Norway. J Vet Intern Med.
doi: 10.1111/jvim.16201 PMID:34288148

Varunjikar MS, Moreno-Ibarguen C, Andrade-Martinez JS, Tung HS, Belghit I, Palmblad M, Olsvik PA, Reyes A, Rasinger JD, Lie KK. 2021. Comparing novel shotgun DNA sequencing and state-of-the-art proteomics approaches for authentication of fish species in mixed samples. Food Control.
doi: 10.1016/j.foodcont.2021.108417

Radisic V, Marathe NP. 2021. Genomic characterization of multidrug-resistant Bacillus toyonensis strain 4HC1 isolated from marine plastic in Norway. J Glob Antimicrob Resist.
doi: 10.1016/j.jgar.2021.07.002 PMID:34273593

Mellingen RM, Myrmel LS, Lie KK, Rasinger JD, Madsen L, Nøstbakken OJ. 2021. RNA sequencing and proteomic profiling reveal different alterations by dietary methylmercury in the hippocampal transcriptome and proteome in BALB/c mice. Metallomics 13.
doi: 10.1093/mtomcs/mfab022 PMID:33890672

Temesgen TT, Tysnes KR, Robertson LJ. 2021. Use of Oxidative Stress Responses to Determine the Efficacy of Inactivation Treatments on Cryptosporidium Oocysts. Microorganisms 9: 1463.
doi: 10.3390/microorganisms9071463

Robinson N, Karlsen C, Ytteborg E, Krasnov A, Gerwins J, Johnsen H, Kolarevic J. 2021. Skin and bone development in Atlantic salmon (Salmo salar) influenced by hatchery environment. Aquaculture 544: 737155.
doi: 10.1016/j.aquaculture.2021.737155

Fjær R, Marciniak K, Sundnes O, Hjorthaug H, Sheng Y, Hammarström C, Sitek JC, Vigeland MD, Backe PH, Øye AM, Fosse JH, Stav-Noraas TE, Uchiyama Y, Matsumoto N, Comi A, Pevsner J, Haraldsen G, Selmer KK. 2021. A novel somatic mutation in GNB2 provides new insights to the pathogenesis of Sturge-weber syndrome. Hum Mol Genet.
doi: 10.1093/hmg/ddab144 PMID:34124757

López-Muñoz AD, Rastrojo A, Kropp KA, Viejo-Borbolla A, Alcamí A. 2021. Combination of long- and short-read sequencing fully resolves complex repeats of herpes simplex virus 2 strain MS complete genome. Microb Genom 7.
doi: 10.1099/mgen.0.000586 PMID:34170814

Hestetun JT, Lanzén A, Skaar KS, Dahlgren TG. 2021. The impact of DNA extract homogenization and replication on marine sediment metabarcoding diversity and heterogeneity. Environmental DNA.
doi: 10.1002/edn3.223

Hestetun JT, Lanzén A, Dahlgren TG. 2021. Grab what you can—an evaluation of spatial replication to decrease heterogeneity in sediment eDNA metabarcoding. 9: e11619.
doi: 10.7717/peerj.11619

Abiriga D, Jenkins A, Alfsnes K, Vestgarden LS, Klempe H. 2021. Spatiotemporal and seasonal dynamics in the microbial communities of a landfill-leachate contaminated aquifer. FEMS Microbiol Ecol.
doi: 10.1093/femsec/fiab086 PMID:34137824

Løvdal T, Brandal LT, Sundaram AY, Naseer U, Roth B, Lunestad BT. 2021. Small-Scale Comparative Genomic Analysis of Listeria monocytogenes Isolated from Environments of Salmon Processing Plants and Human Cases in Norway. Hygiene 1: 43-55.
doi: 10.3390/hygiene1010005

Andresen IJ, Orr RJS, Krabberød AK, Shalchian-Tabrizi K, Bråte J. 2021. Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA. Sci Rep 11: 12820.
doi: 10.1038/s41598-021-92092-4 PMID:34140556

Osete JR, Akkouh IA, de Assis DR, Szabo A, Frei E, Hughes T, Smeland OB, Steen NE, Andreassen OA, Djurovic S. 2021. Lithium increases mitochondrial respiration in iPSC-derived neural precursor cells from lithium responders. Mol Psychiatry.
doi: 10.1038/s41380-021-01164-4 PMID:34075196

Christensen EE, Jørgensen MJ, Nore KG, Dahl TB, Yang K, Ranheim T, Huse C, Lind A, Nur S, Stiksrud B, Jenum S, Tonby K, Holter JC, Holten AR, Halvorsen B, Dyrhol-Riise AM. 2021. Critical COVID-19 is associated with distinct leukocyte phenotypes and transcriptome patterns. J Intern Med.
doi: 10.1111/joim.13310 PMID:34080738

Jensen S, Frank JA, Arntzen MØ, Duperron S, Vaaje-Kolstad G, Hovland M. 2021. Endozoicomonadaceae symbiont in gills of Acesta clam encodes genes for essential nutrients and polysaccharide degradation. FEMS Microbiol Ecol.
doi: 10.1093/femsec/fiab070 PMID:33988698

Lemma RB, Ledsaak M, Fuglerud BM, Sandve GK, Eskeland R, Gabrielsen OS. 2021. Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB. Sci Rep 11: 9008.
doi: 10.1038/s41598-021-88516-w PMID:33903675

Peñaloza C, Manousaki T, Franch R, Tsakogiannis A, Sonesson A, Aslam ML, Allal F, Bargelloni L, Houston RD, Tsigenopoulos CS. 2021. Development and testing of a combined species SNP array for the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata). Genomics.
doi: 10.1016/j.ygeno.2021.04.038 PMID:33933591

Kallak TK, Bränn E, Fransson E, Johansson Å, Lager S, Comasco E, Lyle R, Skalkidou A. 2021. DNA methylation in cord blood in association with prenatal depressive symptoms. Clin Epigenetics 13: 78.
doi: 10.1186/s13148-021-01054-0 PMID:33845866

Gillard GB, Grønvold L, Røsæg LL, Holen MM, Monsen Ø, Koop BF, Rondeau EB, Gundappa MK, Mendoza J, Macqueen DJ, Rohlfs RV, Sandve SR, Hvidsten TR. 2021. Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication. Genome Biol 22: 103.
doi: 10.1186/s13059-021-02323-0 PMID:33849620

Pinsky ML, Eikeset AM, Helmerson C, Bradbury IR, Bentzen P, Morris C, Gondek-Wyrozemska AT, Baalsrud HT, Brieuc MSO, Kjesbu OS, Godiksen JA, Barth JMI, Matschiner M, Stenseth NC, Jakobsen KS, Jentoft S, Star B. 2021. Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic. Proc Natl Acad Sci U S A 118.
doi: 10.1073/pnas.2025453118 PMID:33827928

Mølmen KS, Hammarström D, Pedersen K, Lian Lie AC, Steile RB, Nygaard H, Khan Y, Hamarsland H, Koll L, Hanestadhaugen M, Eriksen AL, Grindaker E, Whist JE, Buck D, Ahmad R, Strand TA, Rønnestad BR, Ellefsen S. 2021. Vitamin D₃ supplementation does not enhance the effects of resistance training in older adults. J Cachexia Sarcopenia Muscle.
doi: 10.1002/jcsm.12688 PMID:33788419

León-Sampedro R, DelaFuente J, Díaz-Agero C, Crellen T, Musicha P, Rodríguez-Beltrán J, de la Vega C, Hernández-García M, López-Fresneña N, Ruiz-Garbajosa P, Cantón R, Cooper BS, San Millán Á. 2021. Pervasive transmission of a carbapenem resistance plasmid in the gut microbiota of hospitalized patients. Nat Microbiol.
doi: 10.1038/s41564-021-00879-y PMID:33782584

Buberg ML, Mo SS, Sekse C, Sunde M, Wasteson Y, Witsø IL. 2021. Population structure and uropathogenic potential of extended-spectrum cephalosporin-resistant Escherichia coli from retail chicken meat. BMC Microbiol 21: 94.
doi: 10.1186/s12866-021-02160-y PMID:33781204

Avershina E, Sharma P, Taxt AM, Singh H, Frye SA, Paul K, Kapil A, Naseer U, Kaur P, Ahmad R. 2021. AMR-Diag: Neural network based genotype-to-phenotype prediction of resistance towards β-lactams in Escherichia coli and Klebsiella pneumoniae. Computational and Structural Biotechnology Journal.
doi: 10.1016/j.csbj.2021.03.027

Kloos J, Gama JA, Hegstad J, Samuelsen Ø, Johnsen PJ. 2021. Piggybacking on niche-adaptation improves the maintenance of multidrug resistance plasmids. Mol Biol Evol.
doi: 10.1093/molbev/msab091 PMID:33760032

Stenmark B, Eriksson L, Thulin Hedberg S, Anton BP, Fomenkov A, Roberts RJ, Mölling P. 2021. Genome-wide methylome analysis of two strains belonging to the hypervirulent Neisseria meningitidis serogroup W ST-11 clonal complex. Sci Rep 11: 6239.
doi: 10.1038/s41598-021-85266-7 PMID:33737546

Mathew KA, Van Ardelan M, Gonzalez SV, Vadstein O, Vezhapparambu Veena S, Leiknes Ø, Mankettikkara R, Olsen Y. 2021. Temporal dynamics of carbon sequestration in coastal North Atlantic fjord system as seen through dissolved organic matter characterisation. Science of The Total Environment.
doi: 10.1016/j.scitotenv.2021.146402

Viste R, Viken MK, Lie BA, Juvodden HT, Nordstrand SEH, Thorsby PM, Rootwelt T, Kornum BR, Knudsen-Heier S. 2021. High nocturnal sleep fragmentation is associated with low T lymphocyte P2Y11 protein levels in narcolepsy type 1. Sleep.
doi: 10.1093/sleep/zsab062 PMID:33710305

Narud B, Khezri A, Zeremichael TT, Stenseth EB, Heringstad B, Johannisson A, Morrell JM, Collas P, Myromslien FD, Kommisrud E. 2021. Sperm chromatin integrity and DNA methylation in Norwegian Red bulls of contrasting fertility. Mol Reprod Dev.
doi: 10.1002/mrd.23461 PMID:33634579

Wos G, Choudhury RR, Kolář F, Parisod C. 2021. Transcriptional activity of transposable elements along an elevational gradient in Arabidopsis arenosa. Mob DNA 12: 7.
doi: 10.1186/s13100-021-00236-0 PMID:33639991

Gonzalez-Silva BM, Jonassen KR, Bakke I, Østgaard K, Vadstein O. 2021. Understanding structure/function relationships in nitrifying microbial communities after cross-transfer between freshwater and seawater. Sci Rep 11: 2979.
doi: 10.1038/s41598-021-82272-7 PMID:33536458

Le HTMD, Lie KK, Etayo A, Rønnestad I, Sæle Ø. 2021. Physical and nutrient stimuli differentially modulate gut motility patterns, gut transit rate, and transcriptome in an agastric fish, the ballan wrasse. PLoS One 16: e0247076.
doi: 10.1371/journal.pone.0247076 PMID:33571240

Trucchi E, Benazzo A, Lari M, Iob A, Vai S, Nanni L, Bellucci E, Bitocchi E, Raffini F, Xu C, Jackson SA, Lema V, Babot P, Oliszewski N, Gil A, Neme G, Michieli CT, De Lorenzi M, Calcagnile L, Caramelli D, Star B, de Boer H, Boessenkool S, Papa R, Bertorelle G. 2021. Ancient genomes reveal early Andean farmers selected common beans while preserving diversity. Nat Plants.
doi: 10.1038/s41477-021-00848-7 PMID:33558754

Ferrari G, Cuevas A, Gondek-Wyrozemska AT, Ballantyne R, Kersten O, Pálsdóttir AH, van der Jagt I, Hufthammer AK, Ystgaard I, Wickler S, Bigelow GF, Harland J, Nicholson R, Orton D, Clavel B, Boessenkool S, Barrett JH, Star B. 2021. The preservation of ancient DNA in archaeological fish bone. Journal of Archaeological Science 126: 105317.
doi: 10.1016/j.jas.2020.105317

Blanc-Mathieu R, Dahle H, Hofgaard A, Brandt D, Ban H, Kalinowski J, Ogata H, Sandaa RA. 2021. A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. J Virol.
doi: 10.1128/JVI.02446-20 PMID:33536167

Quilbé J, Lamy L, Brottier L, Leleux P, Fardoux J, Rivallan R, Benichou T, Guyonnet R, Becana M, Villar I, Garsmeur O, Hufnagel B, Delteil A, Gully D, Chaintreuil C, Pervent M, Cartieaux F, Bourge M, Valentin N, Martin G, Fontaine L, Droc G, Dereeper A, Farmer A, Libourel C, Nouwen N, Gressent F, Mournet P, D'Hont A, Giraud E, Klopp C, Arrighi JF. 2021. Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium-legume symbiosis. Nat Commun 12: 829.
doi: 10.1038/s41467-021-21094-7 PMID:33547303

Kaspersen H, Haverkamp THA, Ilag HK, Øines Ø, Sekse C, Slettemeås JS. 2021. Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies. Microbiol Resour Announc 10.
doi: 10.1128/MRA.01190-20 PMID:33509985

Radisic V, Lunestad BT, Sanden M, Bank MS, Marathe NP. 2021. Draft Genome Sequence of Multidrug-Resistant Pseudomonas protegens Strain 11HC2, Isolated from Marine Plastic Collected from the West Coast of Norway. Microbiol Resour Announc 10.
doi: 10.1128/MRA.01285-20 PMID:33446595

Rey S, Jin X, Damsgård B, Bégout ML, Mackenzie S. 2021. Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour. BMC Genomics 22: 33.
doi: 10.1186/s12864-020-07317-z PMID:33413108

 

2020

Radisic V, Nimje PS, Bienfait AM, Marathe NP. 2020. Marine Plastics from Norwegian West Coast Carry Potentially Virulent Fish Pathogens and Opportunistic Human Pathogens Harboring New Variants of Antibiotic Resistance Genes. Microorganisms 8.
doi: 10.3390/microorganisms8081200 PMID:32784594

Jinnerot T, Tomaselli ATP, Johannessen GS, Söderlund R, Urdahl AM, Aspán A, Sekse C. 2020. The prevalence and genomic context of Shiga toxin 2a genes in E. coli found in cattle. PLoS One 15: e0232305.
doi: 10.1371/journal.pone.0232305 PMID:32785271

Caglayan S, Hashim A, Cieslar-Pobuda A, Jensen V, Behringer S, Talug B, Chu DT, Pecquet C, Rogne M, Brech A, Brorson SH, Nagelhus EA, Hannibal L, Boschi A, Taskén K, Staerk J. 2020. Optic Atrophy 1 Controls Human Neuronal Development by Preventing Aberrant Nuclear DNA Methylation. iScience 23: 101154.
doi: 10.1016/j.isci.2020.101154 PMID:32450518

Burton J, Umu SU, Langseth H, Grotmol T, Grimsrud TK, Haugen TB, Rounge TB. 2020. Serum RNA Profiling in the 10-Years Period Prior to Diagnosis of Testicular Germ Cell Tumor. Front Oncol 10: 574977.
doi: 10.3389/fonc.2020.574977 PMID:33251139

Scherer D, Dávila López MD, Goeppert B, Abrahamsson S, González Silos RG, Nova I, Marcelain K, Roa JC, Ibberson D, Umu SU, Rounge TB, Roessler S, Bermejo JL. 2020. RNA Sequencing of Hepatobiliary Cancer Cell Lines: Data and Applications to Mutational and Transcriptomic Profiling. Cancers (Basel) 12.
doi: 10.3390/cancers12092510 PMID:32899426

Brägelmann J, Barahona Ponce C, Marcelain K, Roessler S, Goeppert B, Gallegos I, Colombo A, Sanhueza V, Morales E, Rivera MT, de Toro G, Ortega A, Müller B, Gabler F, Scherer D, Waldenberger M, Reischl E, Boekstegers F, Garate-Calderon V, Umu SU, Rounge TB, Popanda O, Lorenzo Bermejo J. 2020. Epigenome-wide analysis of methylation changes in the sequence of gallstone disease, dysplasia, and gallbladder cancer. Hepatology.
doi: 10.1002/hep.31585 PMID:33020926

Matschiner M, Böhne A, Ronco F, Salzburger W. 2020. The genomic timeline of cichlid fish diversification across continents. Nat Commun 11: 5895.
doi: 10.1038/s41467-020-17827-9 PMID:33208747

Dvergedal H, Harvey TN, Jin Y, Ødegård J, Grønvold L, Sandve SR, Våge DI, Moen T, Klemetsdal G. 2020. Genomic regions and signaling pathways associated with indicator traits for feed efficiency in juvenile Atlantic salmon (Salmo salar). Genet Sel Evol 52: 66.
doi: 10.1186/s12711-020-00587-x PMID:33158415

Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Rayner S, Lie BA, Gilfillan GD. 2020. An extension to: Systematic assessment of commercially available low-input miRNA library preparation kits. RNA Biol 17: 1284-1292.
doi: 10.1080/15476286.2020.1761081 PMID:32436772

Helgeland H, Gabrielsen I, Akselsen H, Sundaram AYM, Flåm ST, Lie BA. 2020. Transcriptome profiling of human thymic CD4+ and CD8+ T cells compared to primary peripheral T cells. BMC Genomics 21: 350.
doi: 10.1186/s12864-020-6755-1 PMID:32393182

Vestrum RI, Attramadal KJK, Vadstein O, Gundersen MS, Bakke I. 2020. Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure. FEMS Microbiol Ecol 96.
doi: 10.1093/femsec/fiaa163 PMID:32816010

Brorson IS, Eriksson AM, Leikfoss IS, Vitelli V, Celius EG, Lüders T, Berge T, Harbo HF, Nilsen H, Bos SD. 2020. CD8⁺ T cell gene expression analysis identifies differentially expressed genes between multiple sclerosis patients and healthy controls. Mult Scler J Exp Transl Clin 6: 2055217320978511.
doi: 10.1177/2055217320978511 PMID:33343920

Saghaug CS, Klotz C, Kallio JP, Aebischer T, Langeland N, Hanevik K. 2020. Genetic Diversity of the Flavohemoprotein Gene of Giardia lamblia: Evidence for High Allelic Heterozygosity and Copy Number Variation. Infect Drug Resist 13: 4531-4545.
doi: 10.2147/IDR.S274543 PMID:33376360

Orr RJ, Sannum MM, Boessenkool S, Di Martino E, Gordon DP, Mello HL, Obst M, Ramsfjell MH, Smith AM, Liow LH. 2020. A molecular phylogeny of historical and contemporary specimens of an under‐studied micro‐invertebrate group. Ecol Evol.
doi: 10.1002/ece3.7042

Jin X, Morro B, Tørresen OK, Moiche V, Solbakken MH, Jakobsen KS, Jentoft S, MacKenzie S. 2020. Innovation in Nucleotide-Binding Oligomerization-Like Receptor and Toll-Like Receptor Sensing Drives the Major Histocompatibility Complex-II Free Atlantic Cod Immune System. Front Immunol 11: 609456.
doi: 10.3389/fimmu.2020.609456 PMID:33362798

Martín-Durán JM, Vellutini BC, Marlétaz F, Cetrangolo V, Cvetesic N, Thiel D, Henriet S, Grau-Bové X, Carrillo-Baltodano AM, Gu W, Kerbl A, Marquez Y, Bekkouche N, Chourrout D, Gómez-Skarmeta JL, Irimia M, Lenhard B, Worsaae K, Hejnol A. 2020. Conservative route to genome compaction in a miniature annelid. Nat Ecol Evol.
doi: 10.1038/s41559-020-01327-6 PMID:33199869

Sokolova M, Yang K, Hansen SH, Louwe MC, Kummen M, Hov JER, Sjaastad I, Berge RK, Halvorsen B, Aukrust P, Yndestad A, Ranheim T. 2020. NLRP3 inflammasome deficiency attenuates metabolic disturbances involving alterations in the gut microbial profile in mice exposed to high fat diet. Sci Rep 10: 21006.
doi: 10.1038/s41598-020-76497-1 PMID:33273482

Khan Y, Hammarström D, Rønnestad BR, Ellefsen S, Ahmad R. 2020. Increased biological relevance of transcriptome analyses in human skeletal muscle using a model-specific pipeline. BMC Bioinformatics 21: 548.
doi: 10.1186/s12859-020-03866-y PMID:33256614

Schure AT, Pillai AA, Thorbek L, Bhavani Shankar M, Puri R, Ravikanth G, Boer HJ, Boessenkool S. 2020. eDNA metabarcoding reveals dietary niche overlap among herbivores in an Indian wildlife sanctuary. Environmental DNA.
doi: 10.1002/edn3.168

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Mo SS, Telke AA, Osei KO, Sekse C, Slettemeås JS, Urdahl AM, Ilag HK, Leangapichart T, Sunde M. 2020. blaCTX–M–1/IncI1-Iγ Plasmids Circulating in Escherichia coli From Norwegian Broiler Production Are Related, but Distinguishable. Front Microbiol 11.
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Stenmark B, Harrison OB, Eriksson L, Anton BP, Fomenkov A, Roberts RJ, Tooming-Klunderud A, Bratcher HB, Bray JE, Thulin-Hedberg S, Maiden MCJ, Mölling P. 2020. Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease. Sci Rep 10: 3644.
doi: 10.1038/s41598-020-59509-y PMID:32108139

Su H, Zhang X, He Y, Li L, Wang Y, Hong G, Xu P. 2020. Transcriptomic Analysis Reveals the Molecular Adaptation of Three Major Secondary Metabolic Pathways to Multiple Macronutrient Starvation in Tea (Camellia sinensis). Genes (Basel) 11.
doi: 10.3390/genes11030241 PMID:32106614

Løvmo SD, Madaro A, Whatmore P, Bardal T, Ostensen MA, Sandve SR, Olsen RE. 2020. Mid and hindgut transcriptome profiling analysis of Atlantic salmon (. R Soc open sci 7: 191480.
doi: 10.1098/rsos.191480

Akkouh IA, Ueland T, Hansson L, Inderhaug E, Hughes T, Eiel Steen N, Aukrust P, Andreassen OA, Szabo A, Djurovic S. 2020. Decreased IL-1β-induced CCL20 response in human iPSC-astrocytes in schizophrenia: potential attenuating effects on recruitment of regulatory T cells. Brain Behav Immun.
doi: 10.1016/j.bbi.2020.02.008 PMID:32109548

Robinson NA, Krasnov A, Burgerhout E, Johnsen H, Moghadam HK, Hillestad B, Aslam ML, Baranski M, Boison SA. 2020. Response of the Salmon Heart Transcriptome to Pancreas Disease: Differences Between High- and Low-Ranking Families for Resistance. Sci Rep 10: 868.
doi: 10.1038/s41598-020-57786-1 PMID:31964968

Mayerhofer CCK, Kummen M, Holm K, Broch K, Awoyemi A, Vestad B, Storm-Larsen C, Seljeflot I, Ueland T, Bohov P, Berge RK, Svardal A, Gullestad L, Yndestad A, Aukrust P, Hov JR, Trøseid M. 2020. Low fibre intake is associated with gut microbiota alterations in chronic heart failure. ESC Heart Fail.
doi: 10.1002/ehf2.12596 PMID:31978943

Fedorov VB, Trucchi E, Goropashnaya AV, Waltari E, Whidden SE, Stenseth NC. 2020. Impact of past climate warming on genomic diversity and demographic history of collared lemmings across the Eurasian Arctic. Proc Natl Acad Sci U S A.
doi: 10.1073/pnas.1913596117 PMID:31988125

Nilsson P, Solbakken MH, Schmid BV, Orr RJS, Lv R, Cui Y, Song Y, Zhang Y, Baalsrud HT, Tørresen OK, Stenseth NC, Yang R, Jakobsen KS, Easterday WR, Jentoft S. 2020. The genome of the great gerbil reveals species-specific duplication of an MHCII gene. Genome Biol Evol.
doi: 10.1093/gbe/evaa008 PMID:31971556

Ting YT, Dahal-Koirala S, Kim HSK, Qiao SW, Neumann RS, Lundin KEA, Petersen J, Reid HH, Sollid LM, Rossjohn J. 2020. A molecular basis for the T cell response in HLA-DQ2.2 mediated celiac disease. Proc Natl Acad Sci U S A.
doi: 10.1073/pnas.1914308117 PMID:31974305

Stüken A, Haverkamp THA. 2020. Metagenomic Sequences of Three Drinking Water and Two Shower Hose Biofilm Samples Treated with or without Copper-Silver Ionization. Microbiol Resour Announc 9.
doi: 10.1128/MRA.01220-19 PMID:31948958

Nousias O, Tsakogiannis A, Duncan N, Villa J, Tzokas K, Estevez A, Chatziplis D, Tsigenopoulos CS. 2020. Parentage assignment, estimates of heritability and genetic correlation for growth-related traits in meagre Argyrosomus regius. Aquaculture 518: 734663.
doi: 10.1016/j.aquaculture.2019.734663

Koutsouveli V, Manousaki T, Riesgo A, Lagnel J, Kollias S, Tsigenopoulos CS, Arvanitidis C, Dounas C, Magoulas A, Dailianis T. 2020. Gearing Up for Warmer Times: Transcriptomic Response of Spongia officinalis to Elevated Temperatures Reveals Recruited Mechanisms and Potential for Resilience. Front Mar Sci 6.
doi: 10.3389/fmars.2019.00786

Kuleshov KV, Margos G, Fingerle V, Koetsveld J, Goptar IA, Markelov ML, Kolyasnikova NM, Sarksyan DS, Kirdyashkina NP, Shipulin GA, Hovius JW, Platonov AE. 2020. Whole genome sequencing of Borrelia miyamotoi isolate Izh-4: reference for a complex bacterial genome. BMC Genomics 21: 16.
doi: 10.1186/s12864-019-6388-4 PMID:31906865

Barrett JH, Boessenkool S, Kneale CJ, O’Connell TC, Star B. 2020. Ecological globalisation, serial depletion and the medieval trade of walrus rostra. Quaternary Science Reviews 229: 106122.
doi: 10.1016/j.quascirev.2019.106122

Dichter AA, Schultze TG, Becker SA, Tsukayama P, Kempf VAJ. 2020. Complete Genome Sequence of Bartonella bacilliformis Strain KC584 (ATCC 35686). Microbiol Resour Announc 9.
doi: 10.1128/MRA.01377-19 PMID:31896649

Gelpi M, Vestad B, Hansen SH, Holm K, Drivsholm N, Goetz A, Kirkby NS, Lindegaard B, Lebech AM, Hoel H, Michelsen AE, Ueland T, Gerstoft J, Lundgren J, Hov JR, Nielsen SD, Trøseid M. 2020. Impact of Hiv-Related Gut Microbiota Alterations on Metabolic Comorbidities. Clin Infect Dis.
doi: 10.1093/cid/ciz1235 PMID:31894240

du Pré MF, Blazevski J, Dewan AE, Stamnaes J, Kanduri C, Sandve GK, Johannesen MK, Lindstad CB, Hnida K, Fugger L, Melino G, Qiao SW, Sollid LM. 2020. B cell tolerance and antibody production to the celiac disease autoantigen transglutaminase 2. J Exp Med 217.
doi: 10.1084/jem.20190860 PMID:31727780

Dilip Chand Raja S, Rajasekaran S. 2020. Letter to the Editor concerning "Bacteria: back pain, leg pain and Modic sign-a surgical multicentre comparative study" by Fritzell P, et al. (Eur Spine J [2019]; doi:10.1007/s00586-019-06164-1). Eur Spine J.
doi: 10.1007/s00586-020-06318-6 PMID:32008101

 

2019

Coucheron DH, Wojewodzic MW, Bøhn T. 2019. MicroRNAs in Daphnia magna identified and characterized by deep sequencing, genome mapping and manual curation. Sci Rep 9: 15945.
doi: 10.1038/s41598-019-52387-z PMID:31685896

Khider M, Hansen H, Hjerde E, Johansen JA, Willassen NP. 2019. Exploring the transcriptome of luxI^- and ΔainS mutants and the impact of N-3-oxo-hexanoyl-L- and N-3-hydroxy-decanoyl-L-homoserine lactones on biofilm formation in Aliivibrio salmonicida. PeerJ 7: e6845.
doi: 10.7717/peerj.6845 PMID:31106062

Maremonti E, Eide DM, Oughton DH, Salbu B, Grammes F, Kassaye YA, Guédon R, Lecomte-Pradines C, Brede DA. 2019. Gamma radiation induces life stage-dependent reprotoxicity in Caenorhabditis elegans via impairment of spermatogenesis. Sci Total Environ 695: 133835.
doi: 10.1016/j.scitotenv.2019.133835 PMID:31425988

Le HT, Shao X, Krogdahl Å, Kortner TM, Lein I, Kousoulaki K, Lie KK, Sæle Ø. 2019. Intestinal Function of the Stomachless Fish, Ballan Wrasse (Labrus bergylta). Front Mar Sci 6.
doi: 10.3389/fmars.2019.00140

Vimberg V, Zieglerova L, Závora J, Šemberová L, Prásilová J, Adámková V, Novotna GB. 2019. Draft genome sequences of three clinical isolates of teicoplanin-resistant Staphylococcus epidermidis from patients without prior exposure to glycopeptide antibiotics. J Glob Antimicrob Resist 16: 251-253.
doi: 10.1016/j.jgar.2019.02.005 PMID:30797086

Langlete P, Krabberød AK, Winther-Larsen HC. 2019. Vesicles From Vibrio cholerae Contain AT-Rich DNA and Shorter mRNAs That Do Not Correlate With Their Protein Products. Front Microbiol 10: 2708.
doi: 10.3389/fmicb.2019.02708 PMID:31824470

Cristofari R, Plaza P, Fernández CE, Trucchi E, Gouin N, Le Bohec C, Zavalaga C, Alfaro-Shigueto J, Luna-Jorquera G. 2019. Unexpected population fragmentation in an endangered seabird: the case of the Peruvian diving-petrel. Sci Rep 9: 2021.
doi: 10.1038/s41598-019-38682-9 PMID:30765805

Boison SA, Gjerde B, Hillestad B, Makvandi-Nejad S, Moghadam HK. 2019. Genomic and Transcriptomic Analysis of Amoebic Gill Disease Resistance in Atlantic Salmon (Salmo salar L.). Front Genet 10: 68.
doi: 10.3389/fgene.2019.00068 PMID:30873203

Horn SS, Sonesson AK, Krasnov A, Moghadam H, Hillestad B, Meuwissen THE, Ruyter B. 2019. Individual differences in EPA and DHA content of Atlantic salmon are associated with gene expression of key metabolic processes. Sci Rep 9: 3889.
doi: 10.1038/s41598-019-40391-2 PMID:30846825

Margaryan A, Panosyan H, Mamimin C, Trchounian A, Birkeland NK. 2019. Insights into the Bacterial Diversity of the Acidic Akhtala Mine Tailing in Armenia Using Molecular Approaches. Curr Microbiol 76: 462-469.
doi: 10.1007/s00284-019-01640-9 PMID:30778659

Lie KK, Meier S, Sørhus E, Edvardsen RB, Karlsen Ø, Olsvik PA. 2019. Offshore Crude Oil Disrupts Retinoid Signaling and Eye Development in Larval Atlantic Haddock. Front Mar Sci 6.
doi: 10.3389/fmars.2019.00368

Khider M, Hjerde E, Hansen H, Willassen NP. 2019. Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicida. BMC Genomics 20: 220.
doi: 10.1186/s12864-019-5594-4 PMID:30876404

Maremonti E, Eide DM, Rossbach LM, Lind OC, Salbu B, Brede DA. 2020. In vivo assessment of reactive oxygen species production and oxidative stress effects induced by chronic exposure to gamma radiation in Caenorhabditis elegans. Free Radic Biol Med 152: 583-596.
doi: 10.1016/j.freeradbiomed.2019.11.037 PMID:31805397

Jalili M, Jin Y, Bones AM, Olsen Y, Vadstein O, Østensen MA, Buonocore F, Gerdol M, Pallavicini A, Scapigliati G. 2019. Dietary fatty acid source has little effect on the development of the immune system in the pyloric caeca of Atlantic salmon fry. Sci Rep 9: 27.
doi: 10.1038/s41598-018-37266-3 PMID:30631091

Pain M, Hjerde E, Klingenberg C, Cavanagh JP. 2019. Comparative Genomic Analysis of Staphylococcus haemolyticus Reveals Key to Hospital Adaptation and Pathogenicity. Front Microbiol 10: 2096.
doi: 10.3389/fmicb.2019.02096 PMID:31552006

Ikram S, Heikal A, Finke S, Hofgaard A, Rehman Y, Sabri AN, Økstad OA. 2019. Bacillus cereus biofilm formation on central venous catheters of hospitalised cardiac patients. Biofouling 35: 204-216.
doi: 10.1080/08927014.2019.1586889 PMID:30950292

Lewandowska-Sabat AM, Kirsanova E, Klopp C, Solberg TR, Heringstad B, Østerås O, Boysen P, Olsaker I. 2019. Transcription Profiling of Monocyte-Derived Macrophages Infected In Vitro With Two Strains of Streptococcus agalactiae Reveals Candidate Pathways Affecting Subclinical Mastitis in Cattle. Front Genet 10: 689.
doi: 10.3389/fgene.2019.00689 PMID:31417606

Christophersen A, Lund EG, Snir O, Solà E, Kanduri C, Dahal-Koirala S, Zühlke S, Molberg Ø, Utz PJ, Rohani-Pichavant M, Simard JF, Dekker CL, Lundin KEA, Sollid LM, Davis MM. 2019. Distinct phenotype of CD4⁺ T cells driving celiac disease identified in multiple autoimmune conditions. Nat Med 25: 734-737.
doi: 10.1038/s41591-019-0403-9 PMID:30911136

Cernilogar FM, Hasenöder S, Wang Z, Scheibner K, Burtscher I, Sterr M, Smialowski P, Groh S, Evenroed IM, Gilfillan GD, Lickert H, Schotta G. 2019. Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2. Nucleic Acids Res 47: 9069-9086.
doi: 10.1093/nar/gkz627 PMID:31350899

Hueso-Gil A, Nyerges Á, Pál C, Calles B, de Lorenzo V. 2020. Multiple-Site Diversification of Regulatory Sequences Enables Interspecies Operability of Genetic Devices. ACS Synth Biol 9: 104-114.
doi: 10.1021/acssynbio.9b00375 PMID:31794196

Loit K, Adamson K, Bahram M, Puusepp R, Anslan S, Kiiker R, Drenkhan R, Tedersoo L. 2019. Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens. Appl Environ Microbiol 85.
doi: 10.1128/AEM.01368-19 PMID:31444199

De Schepper S, Ray JL, Skaar KS, Sadatzki H, Ijaz UZ, Stein R, Larsen A. 2019. The potential of sedimentary ancient DNA for reconstructing past sea ice evolution. ISME J 13: 2566-2577.
doi: 10.1038/s41396-019-0457-1 PMID:31235841

Le Moine Bauer S, Sjøberg AG, L'Haridon S, Stokke R, Roalkvam I, Steen IH, Dahle H. 2019. Profundibacter amoris gen. nov., sp. nov., a new member of the Roseobacter clade isolated from Loki's Castle Vent Field on the Arctic Mid-Ocean Ridge. Int J Syst Evol Microbiol 69: 975-981.
doi: 10.1099/ijsem.0.003234 PMID:30758283

Sturød K, Dhariwal A, Dahle UR, Vestrheim DF, Petersen FC. 2019. Impact of narrow-spectrum penicillin V on the oral and faecal resistome in a young child treated for otitis media. J Glob Antimicrob Resist 20: 290-297.
doi: 10.1016/j.jgar.2019.08.004 PMID:31415828

Tedersoo L, Anslan S. 2019. Towards PacBio-based pan-eukaryote metabarcoding using full-length ITS sequences. Environ Microbiol Rep 11: 659-668.
doi: 10.1111/1758-2229.12776 PMID:31219680

Zhong X, Heinicke F, Lie BA, Rayner S. 2019. Accurate Adapter Information Is Crucial for Reproducibility and Reusability in Small RNA Seq Studies. Noncoding RNA 5.
doi: 10.3390/ncrna5040049 PMID:31661777

Musilova Z, Cortesi F, Matschiner M, Davies WIL, Patel JS, Stieb SM, de Busserolles F, Malmstrøm M, Tørresen OK, Brown CJ, Mountford JK, Hanel R, Stenkamp DL, Jakobsen KS, Carleton KL, Jentoft S, Marshall J, Salzburger W. 2019. Vision using multiple distinct rod opsins in deep-sea fishes. Science 364: 588-592.
doi: 10.1126/science.aav4632 PMID:31073066

Bjerkan KN, Hornslien KS, Johannessen IM, Krabberød AK, van Ekelenburg YS, Kalantarian M, Shirzadi R, Comai L, Brysting AK, Bramsiepe J, Grini PE. 2020. Genetic variation and temperature affects hybrid barriers during interspecific hybridization. Plant J 101: 122-140.
doi: 10.1111/tpj.14523 PMID:31487093

Iqbal Z, Koht J, Pihlstrøm L, Henriksen SP, Cappelletti C, Russel MB, Norberto de Souza O, Skogseid IM, Toft M. 2019. Missense mutations in DYT-TOR1A dystonia. Neurol Genet 5: e343.
doi: 10.1212/NXG.0000000000000343 PMID:31321303

Tsakogiannis A, Manousaki T, Lagnel J, Papanikolaou N, Papandroulakis N, Mylonas CC, Tsigenopoulos CS. 2018. The Gene Toolkit Implicated in Functional Sex in Sparidae Hermaphrodites: Inferences From Comparative Transcriptomics. Front Genet 9: 749.
doi: 10.3389/fgene.2018.00749 PMID:30713551

Kyriakis D, Kanterakis A, Manousaki T, Tsakogiannis A, Tsagris M, Tsamardinos I, Papaharisis L, Chatziplis D, Potamias G, Tsigenopoulos CS. 2019. Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD Sequencing. Front Genet 10: 675.
doi: 10.3389/fgene.2019.00675 PMID:31447879

Natsidis P, Tsakogiannis A, Pavlidis P, Tsigenopoulos CS, Manousaki T. 2019. Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling. Commun Biol 2: 400.
doi: 10.1038/s42003-019-0654-5 PMID:31925294

Berger TC, Vigeland MD, Hjorthaug HS, Etholm L, Nome CG, Taubøll E, Heuser K, Selmer KK. 2019. Neuronal and glial DNA methylation and gene expression changes in early epileptogenesis. PLoS One 14: e0226575.
doi: 10.1371/journal.pone.0226575 PMID:31887157

Rydning SL, Koht J, Sheng Y, Sowa P, Hjorthaug HS, Wedding IM, Erichsen AK, Hovden IA, Backe PH, Tallaksen CME, Vigeland MD, Selmer KK. 2019. Biallelic POLR3A variants confirmed as a frequent cause of hereditary ataxia and spastic paraparesis. Brain 142: e12.
doi: 10.1093/brain/awz041 PMID:30847471

Riiser ES, Haverkamp THA, Varadharajan S, Borgan Ø, Jakobsen KS, Jentoft S, Star B. 2019. Switching on the light: using metagenomic shotgun sequencing to characterize the intestinal microbiome of Atlantic cod. Environ Microbiol 21: 2576-2594.
doi: 10.1111/1462-2920.14652 PMID:31091345

Klemetsen T, Willassen NP, Karlsen CR. 2019. Full-length 16S rRNA gene classification of Atlantic salmon bacteria and effects of using different 16S variable regions on community structure analysis. Microbiologyopen 8: e898.
doi: 10.1002/mbo3.898 PMID:31271529

Harvey TN, Sandve SR, Jin Y, Vik JO, Torgersen JS. 2019. Liver slice culture as a model for lipid metabolism in fish. PeerJ 7: e7732.
doi: 10.7717/peerj.7732 PMID:31576253

Sumathipala D, Strømme P, Gilissen C, Corominas J, Frengen E, Misceo D. 2019. TBCK Encephaloneuropathy With Abnormal Lysosomal Storage: Use of a Structural Variant Bioinformatics Pipeline on Whole-Genome Sequencing Data Unravels a 20-Year-Old Clinical Mystery. Pediatr Neurol 96: 74-75.
doi: 10.1016/j.pediatrneurol.2019.02.001 PMID:30898414

Skrede I, Solbakken MH, Hess J, Fossdal CG, Hegnar O, Alfredsen G. 2019. Wood Modification by Furfuryl Alcohol Resulted in a Delayed Decomposition Response in Rhodonia (Postia) placenta. Appl Environ Microbiol 85.
doi: 10.1128/AEM.00338-19 PMID:31076422

Lagström S, van der Weele P, Rounge TB, Christiansen IK, King AJ, Ambur OH. 2019. HPV16 whole genome minority variants in persistent infections from young Dutch women. J Clin Virol 119: 24-30.
doi: 10.1016/j.jcv.2019.08.003 PMID:31446251

Dudin O, Ondracka A, Grau-Bové X, Haraldsen AA, Toyoda A, Suga H, Bråte J, Ruiz-Trillo I. 2019. A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization. Elife 8.
doi: 10.7554/eLife.49801 PMID:31647412

Mittermayer FH, Stiasny MH, Clemmesen C, Bayer T, Puvanendran V, Chierici M, Jentoft S, Reusch TBH. 2019. Transcriptome profiling reveals exposure to predicted end-of-century ocean acidification as a stealth stressor for Atlantic cod larvae. Sci Rep 9: 16908.
doi: 10.1038/s41598-019-52628-1 PMID:31729401

Bizuayehu TT, Mommens M, Sundaram AYM, Dhanasiri AKS, Babiak I. 2019. Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos. BMC Genomics 20: 315.
doi: 10.1186/s12864-019-5667-4 PMID:31014241

Gabrielsen ISM, Helgeland H, Akselsen H, D Aass HC, Sundaram AYM, Snowhite IV, Pugliese A, Flåm ST, Lie BA. 2019. Transcriptomes of antigen presenting cells in human thymus. PLoS One 14: e0218858.
doi: 10.1371/journal.pone.0218858 PMID:31261375

Sæbø Pettersen K, Sundaram AYM, Skjerdal T, Wasteson Y, Kijewski A, Lindbäck T, Aspholm M. 2019. Exposure to Broad-Spectrum Visible Light Causes Major Transcriptomic Changes in Listeria monocytogenes EGDe. Appl Environ Microbiol 85.
doi: 10.1128/AEM.01462-19 PMID:31492665

Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Farmer A, Henderson JM, Hussong MA, Moll P, Nguyen L, McNulty A, Shaffer JM, Shore S, Yip HK, Vitkovska J, Rayner S, Lie BA, Gilfillan GD. 2020. Systematic assessment of commercially available low-input miRNA library preparation kits. RNA Biol 17: 75-86.
doi: 10.1080/15476286.2019.1667741 PMID:31559901

Huszthy PC, Gopalakrishnan RP, Jacobsen JT, Haabeth OAW, Løset GÅ, Braathen R, Schenck K, Tveita AA, Munthe LA, Bogen B. 2019. B cell receptor ligation induces display of V-region peptides on MHC class II molecules to T cells. Proc Natl Acad Sci U S A 116: 25850-25859.
doi: 10.1073/pnas.1902836116 PMID:31796587

Brorson IS, Eriksson A, Leikfoss IS, Celius EG, Berg-Hansen P, Barcellos LF, Berge T, Harbo HF, Bos SD. 2019. No differential gene expression for CD4⁺ T cells of MS patients and healthy controls. Mult Scler J Exp Transl Clin 5: 2055217319856903.
doi: 10.1177/2055217319856903 PMID:31223483

Manousaki T, Koutsouveli V, Lagnel J, Kollias S, Tsigenopoulos CS, Arvanitidis C, Magoulas A, Dounas C, Dailianis T. 2019. A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts. BMC Res Notes 12: 813.
doi: 10.1186/s13104-019-4843-6 PMID:31852508

Paruch L, Paruch AM, Eiken HG, Sørheim R. 2019. Faecal pollution affects abundance and diversity of aquatic microbial community in anthropo-zoogenically influenced lotic ecosystems. Sci Rep 9: 19469.
doi: 10.1038/s41598-019-56058-x PMID:31857659

Ottoni C, Guellil M, Ozga AT, Stone AC, Kersten O, Bramanti B, Porcier S, Van Neer W. 2019. Metagenomic analysis of dental calculus in ancient Egyptian baboons. Sci Rep 9: 19637.
doi: 10.1038/s41598-019-56074-x PMID:31873124

Orr RJS, Haugen MN, Berning B, Bock P, Cumming RL, Florence WK, Hirose M, Di Martino E, Ramsfjell MH, Sannum MM, Smith AM, Vieira LM, Waeschenbach A, Liow LH. 2019. A genome-skimmed phylogeny of a widespread bryozoan family, Adeonidae. BMC Evol Biol 19: 235.
doi: 10.1186/s12862-019-1563-4 PMID:31881939

Rekdal SL, Anmarkrud JA, Lifjeld JT, Johnsen A. 2019. Extra-pair mating in a passerine bird with highly duplicated major histocompatibility complex class II: Preference for the golden mean. Mol Ecol 28: 5133-5144.
doi: 10.1111/mec.15273 PMID:31614034

Wikenius E, Moe V, Smith L, Heiervang ER, Berglund A. 2019. DNA methylation changes in infants between 6 and 52 weeks. Sci Rep 9: 17587.
doi: 10.1038/s41598-019-54355-z PMID:31772264

Khezri A, Narud B, Stenseth EB, Johannisson A, Myromslien FD, Gaustad AH, Wilson RC, Lyle R, Morrell JM, Kommisrud E, Ahmad R. 2019. DNA methylation patterns vary in boar sperm cells with different levels of DNA fragmentation. BMC Genomics 20: 897.
doi: 10.1186/s12864-019-6307-8 PMID:31775629

Mattingsdal M, Jorde PE, Knutsen H, Jentoft S, Stenseth NC, Sodeland M, Robalo JI, Hansen MM, André C, Blanco Gonzalez E. 2020. Demographic history has shaped the strongly differentiated corkwing wrasse populations in Northern Europe. Mol Ecol 29: 160-171.
doi: 10.1111/mec.15310 PMID:31733084

Söderberg JJ, Grgic M, Hjerde E, Haugen P. 2019. Aliivibrio wodanis as a production host: development of genetic tools for expression of cold-active enzymes. Microb Cell Fact 18: 197.
doi: 10.1186/s12934-019-1247-1 PMID:31711487

Gran-Stadniczeñko S, Krabberød AK, Sandaa RA, Yau S, Egge E, Edvardsen B. 2019. Seasonal Dynamics of Algae-Infecting Viruses and Their Inferred Interactions with Protists. Viruses 11.
doi: 10.3390/v11111043 PMID:31717498

Sundaram AYM, Garseth ÅH, Maccari G, Grimholt U. 2020. An Illumina approach to MHC typing of Atlantic salmon. Immunogenetics 72: 89-100.
doi: 10.1007/s00251-019-01143-8 PMID:31713647

Varadharajan S, Rastas P, Löytynoja A, Matschiner M, Calboli FCF, Guo B, Nederbragt AJ, Jakobsen KS, Merilä J. 2019. A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome. Genome Biol Evol 11: 3291-3308.
doi: 10.1093/gbe/evz240 PMID:31687752

Akkouh IA, Skrede S, Holmgren A, Ersland KM, Hansson L, Bahrami S, Andreassen OA, Steen VM, Djurovic S, Hughes T. 2019. Exploring lithium's transcriptional mechanisms of action in bipolar disorder: a multi-step study. Neuropsychopharmacology.
doi: 10.1038/s41386-019-0556-8 PMID:31652432

Dahal-Koirala S, Neumann RS, Jahnsen J, Lundin KEA, Sollid LM. 2019. On the immune response to barley in celiac disease: Biased and public T-cell receptor usage to a barley unique and immunodominant gluten epitope. Eur J Immunol.
doi: 10.1002/eji.201948253 PMID:31628754

Juvodden HT, Viken MK, Nordstrand SEH, Viste R, Westlye LT, Thorsby PM, Lie BA, Knudsen-Heier S. 2019. HLA and sleep parameter associations in post-H1N1 narcolepsy type 1 patients and first-degree relatives. Sleep.
doi: 10.1093/sleep/zsz239 PMID:31606740

Sävilammi T, Primmer CR, Varadharajan S, Guyomard R, Guiguen Y, Sandve SR, Vøllestad LA, Papakostas S, Lien S. 2019. The Chromosome-Level Genome Assembly of European Grayling Reveals Aspects of a Unique Genome Evolution Process Within Salmonids. G3 (Bethesda) 9: 1283-1294.
doi: 10.1534/g3.118.200919 PMID:30833292

McLeod A, Fagerlund A, Rud I, Axelsson L. 2019. Large Plasmid Complement Resolved: Complete Genome Sequencing of Lactobacillus plantarum MF1298, a Candidate Probiotic Strain Associated with Unfavorable Effect. Microorganisms 7.
doi: 10.3390/microorganisms7080262 PMID:31416278

Adam AC, Lie KK, Whatmore P, Jakt LM, Moren M, Skjærven KH. 2019. Profiling DNA methylation patterns of zebrafish liver associated with parental high dietary arachidonic acid. PLoS One 14: e0220934.
doi: 10.1371/journal.pone.0220934 PMID:31398226

Skugor A, Kjos NP, Sundaram AYM, Mydland LT, Ånestad R, Tauson AH, Øverland M. 2019. Effects of long-term feeding of rapeseed meal on skeletal muscle transcriptome, production efficiency and meat quality traits in Norwegian Landrace growing-finishing pigs. PLoS One 14: e0220441.
doi: 10.1371/journal.pone.0220441 PMID:31390356

Andresen AMS, Lutfi E, Ruyter B, Berge G, Gjøen T. 2019. Interaction between dietary fatty acids and genotype on immune response in Atlantic salmon (Salmo salar) after vaccination: A transcriptome study. PLoS One 14: e0219625.
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Furi L, Crawford LA, Rangel-Pineros G, Manso AS, De Ste Croix M, Haigh RD, Kwun MJ, Engelsen Fjelland K, Gilfillan GD, Bentley SD, Croucher NJ, Clokie MR, Oggioni MR. 2019. Methylation Warfare: Interaction of Pneumococcal Bacteriophages with Their Host. J Bacteriol 201.
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Iversen R, Roy B, Stamnaes J, Høydahl LS, Hnida K, Neumann RS, Korponay-Szabó IR, Lundin KEA, Sollid LM. 2019. Efficient T cell-B cell collaboration guides autoantibody epitope bias and onset of celiac disease. Proc Natl Acad Sci U S A 116: 15134-15139.
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Bartolomé-Casado R, Landsverk OJB, Chauhan SK, Richter L, Phung D, Greiff V, Risnes LF, Yao Y, Neumann RS, Yaqub S, Øyen O, Horneland R, Aandahl EM, Paulsen V, Sollid LM, Qiao SW, Baekkevold ES, Jahnsen FL. 2019. Resident memory CD8 T cells persist for years in human small intestine. J Exp Med 216: 2412-2426.
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Maurice S, Montes MS, Nielsen BJ, Bødker L, Martin MD, Jønck CG, Kjøller R, Rosendahl S. 2019. Population genomics of an outbreak of the potato late blight pathogen, Phytophthora infestans, reveals both clonality and high genotypic diversity. Mol Plant Pathol 20: 1134-1146.
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Solbakken MH, Jentoft S, Reitan T, Mikkelsen H, Jakobsen KS, Seppola M. 2019. Whole transcriptome analysis of the Atlantic cod vaccine response reveals subtle changes in adaptive immunity. Comp Biochem Physiol Part D Genomics Proteomics 31: 100597.
doi: 10.1016/j.cbd.2019.100597 PMID:31176987

Datsomor AK, Zic N, Li K, Olsen RE, Jin Y, Vik JO, Edvardsen RB, Grammes F, Wargelius A, Winge P. 2019. CRISPR/Cas9-mediated ablation of elovl2 in Atlantic salmon (Salmo salar L.) inhibits elongation of polyunsaturated fatty acids and induces Srebp-1 and target genes. Sci Rep 9: 7533.
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Karlsen TA, Sundaram AYM, Brinchmann JE. 2019. Single-Cell RNA Sequencing of In Vitro Expanded Chondrocytes: MSC-Like Cells With No Evidence of Distinct Subsets. Cartilage.
doi: 10.1177/1947603519847746 PMID:31072202

Soonvald L, Loit K, Runno-Paurson E, Astover A, Tedersoo L. 2019. The role of long-term mineral and organic fertilisation treatment in changing pathogen and symbiont community composition in soil. Applied Soil Ecology 141: 45-53.
doi: 10.1016/j.apsoil.2019.05.003

Li S, Hu X, Tian R, Guo Y, Chen J, Li Z, Zhao X, Kuang L, Ran D, Zhao H, Zhang X, Wang J, Xia L, Yue J, Yao G, Fu Q, Shi H. 2019. RNA-Seq-based transcriptomic profiling of primary interstitial cells of Cajal in response to bovine viral diarrhea virus infection. Vet Res Commun 43: 143-153.
doi: 10.1007/s11259-019-09754-y PMID:31102142

Lee S, Norheim F, Langleite TM, Gulseth HL, Birkeland KI, Drevon CA. 2019. Effects of long-term exercise on plasma adipokine levels and inflammation-related gene expression in subcutaneous adipose tissue in sedentary dysglycaemic, overweight men and sedentary normoglycaemic men of healthy weight. Diabetologia 62: 1048-1064.
doi: 10.1007/s00125-019-4866-5 PMID:31011777

Solbakken MH, Jentoft S, Reitan T, Mikkelsen H, Gregers TF, Bakke O, Jakobsen KS, Seppola M. 2019. Disentangling the immune response and host-pathogen interactions in Francisella noatunensis infected Atlantic cod. Comp Biochem Physiol Part D Genomics Proteomics 30: 333-346.
doi: 10.1016/j.cbd.2019.04.004 PMID:31054474

Tveit AT, Hestnes AG, Robinson SL, Schintlmeister A, Dedysh SN, Jehmlich N, von Bergen M, Herbold C, Wagner M, Richter A, Svenning MM. 2019. Widespread soil bacterium that oxidizes atmospheric methane. Proc Natl Acad Sci U S A 116: 8515-8524.
doi: 10.1073/pnas.1817812116 PMID:30962365

Bråte J, Fuss J, Jakobsen KS, Klaveness D. 2019. Draft genome assembly and transcriptome sequencing of the golden algae Hydrurus foetidus (Chrysophyceae). F1000Res 8: 401.
doi: 10.12688/f1000research.16734.1

Camacho E, González-de la Fuente S, Rastrojo A, Peiró-Pastor R, Solana JC, Tabera L, Gamarro F, Carrasco-Ramiro F, Requena JM, Aguado B. 2019. Complete assembly of the Leishmania donovani (HU3 strain) genome and transcriptome annotation. Sci Rep 9: 6127.
doi: 10.1038/s41598-019-42511-4 PMID:30992521

Lee S, Kolset SO, Birkeland KI, Drevon CA, Reine TM. 2019. Acute exercise increases syndecan-1 and -4 serum concentrations. Glycoconj J 36: 113-125.
doi: 10.1007/s10719-019-09869-z PMID:30949875

Fröhlich C, Sørum V, Thomassen AM, Johnsen PJ, Leiros HS, Samuelsen Ø. 2019. OXA-48-Mediated Ceftazidime-Avibactam Resistance Is Associated with Evolutionary Trade-Offs. mSphere 4.
doi: 10.1128/mSphere.00024-19 PMID:30918055

Naville M, Henriet S, Warren I, Sumic S, Reeve M, Volff JN, Chourrout D. 2019. Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements. Curr Biol 29: 1161-1168.e6.
doi: 10.1016/j.cub.2019.01.080 PMID:30880010

Slettemeås JS, Sunde M, Ulstad CR, Norström M, Wester AL, Urdahl AM. 2019. Occurrence and characterization of quinolone resistant Escherichia coli from Norwegian turkey meat and complete sequence of an IncX1 plasmid encoding qnrS1. PLoS One 14: e0212936.
doi: 10.1371/journal.pone.0212936 PMID:30856202

Salgado-Flores A, Tveit AT, Wright AD, Pope PB, Sundset MA. 2019. Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway. PLoS One 14: e0213503.
doi: 10.1371/journal.pone.0213503 PMID:30856229

Kaitetzidou E, Katsiadaki I, Lagnel J, Antonopoulou E, Sarropoulou E. 2019. Unravelling paralogous gene expression dynamics during three-spined stickleback embryogenesis. Sci Rep 9: 3752.
doi: 10.1038/s41598-019-40127-2 PMID:30842559

Choquet M, Smolina I, Dhanasiri AKS, Blanco-Bercial L, Kopp M, Jueterbock A, Sundaram AYM, Hoarau G. 2019. Towards population genomics in non-model species with large genomes: a case study of the marine zooplankton Calanus finmarchicus. R Soc Open Sci 6: 180608.
doi: 10.1098/rsos.180608 PMID:30891252

Lunde A, Okaty BW, Dymecki SM, Glover JC. 2019. Molecular Profiling Defines Evolutionarily Conserved Transcription Factor Signatures of Major Vestibulospinal Neuron Groups. eNeuro 6.
doi: 10.1523/ENEURO.0475-18.2019 PMID:30899776

Sánchez M, Blesa A, Sacristán-Horcajada E, Berenguer J. 2019. Complete Genome Sequence of Mycolicibacterium hassiacum DSM 44199. Microbiol Resour Announc 8.
doi: 10.1128/MRA.01522-18 PMID:30701245

Sheng X, Nenseth HZ, Qu S, Kuzu OF, Frahnow T, Simon L, Greene S, Zeng Q, Fazli L, Rennie PS, Mills IG, Danielsen H, Theis F, Patterson JB, Jin Y, Saatcioglu F. 2019. IRE1α-XBP1s pathway promotes prostate cancer by activating c-MYC signaling. Nat Commun 10: 323.
doi: 10.1038/s41467-018-08152-3 PMID:30679434

Blesa A, Sánchez M, Sacristán-Horcajada E, Fuente SG, Peiró R, Berenguer J. 2019. Into the Thermus Mobilome: Presence, Diversity and Recent Activities of Insertion Sequences Across Thermus spp. Microorganisms 7.
doi: 10.3390/microorganisms7010025 PMID:30669685

Barth JMI, Villegas-Ríos D, Freitas C, Moland E, Star B, André C, Knutsen H, Bradbury I, Dierking J, Petereit C, Righton D, Metcalfe J, Jakobsen KS, Olsen EM, Jentoft S. 2019. Disentangling structural genomic and behavioural barriers in a sea of connectivity. Mol Ecol 28: 1394-1411.
doi: 10.1111/mec.15010 PMID:30633410

Junges R, Sturød K, Salvadori G, Åmdal HA, Chen T, Petersen FC. 2019. Characterization of a Signaling System in Streptococcus mitis That Mediates Interspecies Communication with Streptococcus pneumoniae. Appl Environ Microbiol 85.
doi: 10.1128/AEM.02297-18 PMID:30389765

Jin Y, Olsen RE, Østensen MA, Gillard GB, Li K, Harvey TN, Santi N, Vadstein O, Vik JO, Sandve SR, Olsen Y. 2019. Transcriptional regulation of lipid metabolism when salmon fry switches from endogenous to exogenous feeding. Aquaculture 503: 422-9.
doi: 10.1016/j.aquaculture.2018.12.089

Nistelberger HM, Pálsdóttir AH, Star B, Leifsson R, Gondek AT, Orlando L, Barrett JH, Hallsson JH, Boessenkool S. 2019. Sexing Viking Age horses from burial and non-burial sites in Iceland using ancient DNA. Journal of Archaeological Science 101: 115-22.
doi: 10.1016/j.jas.2018.11.007

Ketto IA, Abdelghani A, Johansen AG, Øyaas J, Skeie SB. 2019. Effect of milk protein genetic polymorphisms on rennet and acid coagulation properties after standardisation of protein content. International Dairy Journal 88: 18-24.
doi: 10.1016/j.idairyj.2018.08.008

 

2018

Wang S, Singh SK, Katika MR, Lopez-Aviles S, Hurtado A. 2018. High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines. Int J Mol Sci 19.
doi: 10.3390/ijms19124123 PMID:30572598

Palma M, Krstic A, Peña Perez L, Berglöf A, Meinke S, Wang Q, Blomberg KEM, Kamali-Moghaddam M, Shen Q, Jaremko G, Lundin J, De Paepe A, Höglund P, Kimby E, Österborg A, Månsson R, Smith CIE. 2018. Ibrutinib induces rapid down-regulation of inflammatory markers and altered transcription of chronic lymphocytic leukaemia-related genes in blood and lymph nodes. Br J Haematol 183: 212-224.
doi: 10.1111/bjh.15516 PMID:30125946

Riiser ES, Haverkamp THA, Borgan Ø, Jakobsen KS, Jentoft S, Star B. 2018. A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal Microbiome in Two Geographically Separated Atlantic cod Populations. Front Microbiol 9: 1561.
doi: 10.3389/fmicb.2018.01561 PMID:30057577

Gulla S, Barnes AC, Welch TJ, Romalde JL, Ryder D, Ormsby MJ, Carson J, Lagesen K, Verner-Jeffreys DW, Davies RL, Colquhoun DJ. 2018. Multilocus Variable-Number Tandem-Repeat Analysis of Yersinia ruckeri Confirms the Existence of Host Specificity, Geographic Endemism, and Anthropogenic Dissemination of Virulent Clones. Appl Environ Microbiol 84.
doi: 10.1128/AEM.00730-18 PMID:29884756

Poulsen LC, Edelmann RJ, Krüger S, Diéguez-Hurtado R, Shah A, Stav-Noraas TE, Renzi A, Szymanska M, Wang J, Ehling M, Benedito R, Kasprzycka M, Bækkevold E, Sundnes O, Midwood KS, Scott H, Collas P, Siebel CW, Adams RH, Haraldsen G, Sundlisæter E, Hol J. 2018. Inhibition of Endothelial NOTCH1 Signaling Attenuates Inflammation by Reducing Cytokine-Mediated Histone Acetylation at Inflammatory Enhancers. Arterioscler Thromb Vasc Biol 38: 854-869.
doi: 10.1161/ATVBAHA.117.310388 PMID:29449332

Richter L, Landsverk OJB, Atlasy N, Bujko A, Yaqub S, Horneland R, Øyen O, Aandahl EM, Lundin KEA, Stunnenberg HG, Bækkevold ES, Jahnsen FL. 2018. Transcriptional profiling reveals monocyte-related macrophages phenotypically resembling DC in human intestine. Mucosal Immunol 11: 1512-1523.
doi: 10.1038/s41385-018-0060-1 PMID:30038215

Horn SS, Ruyter B, Meuwissen THE, Hillestad B, Sonesson AK. 2018. Genetic effects of fatty acid composition in muscle of Atlantic salmon. Genet Sel Evol 50: 23.
doi: 10.1186/s12711-018-0394-x PMID:29720078

Eguíluz-Gracia I, Malmstrom K, Dheyauldeen SA, Lohi J, Sajantila A, Aaløkken R, Sundaram AYM, Gilfillan GD, Makela M, Baekkevold ES, Jahnsen FL. 2018. Monocytes accumulate in the airways of children with fatal asthma. Clin Exp Allergy 48: 1631-1639.
doi: 10.1111/cea.13265 PMID:30184280

Anslan S, Nilsson RH, Wurzbacher C, Baldrian P, Leho Tedersoo, Bahram M. 2018. Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. MycoKeys.
doi: 10.3897/mycokeys.39.28109 PMID:30271256

Storesund JE, Lanzèn A, García-Moyano A, Reysenbach AL, Øvreås L. 2018. Diversity patterns and isolation of Planctomycetes associated with metalliferous deposits from hydrothermal vent fields along the Valu Fa Ridge (SW Pacific). Antonie Van Leeuwenhoek 111: 841-858.
doi: 10.1007/s10482-018-1026-8 PMID:29423768

Vander Roost J, Daae FL, Steen IH, Thorseth IH, Dahle H. 2018. Distribution Patterns of Iron-Oxidizing Zeta- and Beta-Proteobacteria From Different Environmental Settings at the Jan Mayen Vent Fields. Front Microbiol 9: 3008.
doi: 10.3389/fmicb.2018.03008 PMID:30574135

Dahle H, Le Moine Bauer S, Baumberger T, Stokke R, Pedersen RB, Thorseth IH, Steen IH. 2018. Energy Landscapes in Hydrothermal Chimneys Shape Distributions of Primary Producers. Front Microbiol 9: 1570.
doi: 10.3389/fmicb.2018.01570 PMID:30061874

Le Moine Bauer S, Stensland A, Daae FL, Sandaa RA, Thorseth IH, Steen IH, Dahle H. 2018. Water Masses and Depth Structure Prokaryotic and T4-Like Viral Communities Around Hydrothermal Systems of the Nordic Seas. Front Microbiol 9: 1002.
doi: 10.3389/fmicb.2018.01002 PMID:29904373

Kjærner-Semb E, Ayllon F, Kleppe L, Sørhus E, Skaftnesmo K, Furmanek T, Segafredo FT, Thorsen A, Fjelldal PG, Hansen T, Taranger GL, Andersson E, Schulz RW, Wargelius A, Edvardsen RB. 2018. Vgll3 and the Hippo pathway are regulated in Sertoli cells upon entry and during puberty in Atlantic salmon testis. Sci Rep 8: 1912.
doi: 10.1038/s41598-018-20308-1 PMID:29382956

Sommer C, Lee S, Gulseth HL, Jensen J, Drevon CA, Birkeland KI. 2018. Soluble Leptin Receptor Predicts Insulin Sensitivity and Correlates With Upregulation of Metabolic Pathways in Men. J Clin Endocrinol Metab 103: 1024-1032.
doi: 10.1210/jc.2017-02126 PMID:29300960

Santoro F, Pettini E, Kazmin D, Ciabattini A, Fiorino F, Gilfillan GD, Evenroed IM, Andersen P, Pozzi G, Medaglini D. 2018. Transcriptomics of the Vaccine Immune Response: Priming With Adjuvant Modulates Recall Innate Responses After Boosting. Front Immunol 9: 1248.
doi: 10.3389/fimmu.2018.01248 PMID:29922291

Rounge TB, Umu SU, Keller A, Meese E, Ursin G, Tretli S, Lyle R, Langseth H. 2018. Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity. Sci Rep 8: 17650.
doi: 10.1038/s41598-018-35974-4 PMID:30518766

Kunath BJ, Delogu F, Naas AE, Arntzen MØ, Eijsink VGH, Henrissat B, Hvidsten TR, Pope PB. 2019. From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. ISME J 13: 603-617.
doi: 10.1038/s41396-018-0290-y PMID:30315317

Müller O, Seuthe L, Bratbak G, Paulsen ML. 2018. Bacterial Response to Permafrost Derived Organic Matter Input in an Arctic Fjord. Front Mar Sci 5.
doi: 10.3389/fmars.2018.00263

Schouw A, Vulcano F, Roalkvam I, Hocking WP, Reeves E, Stokke R, Bødtker G, Steen IH. 2018. Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System. Microorganisms 6.
doi: 10.3390/microorganisms6030063 PMID:29973550

Kintses B, Méhi O, Ari E, Számel M, Györkei Á, Jangir PK, Nagy I, Pál F, Fekete G, Tengölics R, Nyerges Á, Likó I, Bálint A, Molnár T, Bálint B, Vásárhelyi BM, Bustamante M, Papp B, Pál C. 2019. Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota. Nat Microbiol 4: 447-458.
doi: 10.1038/s41564-018-0313-5 PMID:30559406

Vestrum RI, Attramadal KJK, Winge P, Li K, Olsen Y, Bones AM, Vadstein O, Bakke I. 2018. Rearing Water Treatment Induces Microbial Selection Influencing the Microbiota and Pathogen Associated Transcripts of Cod (Gadus morhua) Larvae. Front Microbiol 9: 851.
doi: 10.3389/fmicb.2018.00851 PMID:29765364

Margos G, Gofton A, Wibberg D, Dangel A, Marosevic D, Loh SM, Oskam C, Fingerle V. 2018. The genus Borrelia reloaded. PLoS One 13: e0208432.
doi: 10.1371/journal.pone.0208432 PMID:30586413

Sandaa RA, E Storesund J, Olesin E, Lund Paulsen M, Larsen A, Bratbak G, Ray JL. 2018. Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host⁻Viral Relationships in an Arctic Marine Ecosystem. Viruses 10.
doi: 10.3390/v10120715 PMID:30558156

Hoel H, Hove-Skovsgaard M, Hov JR, Gaardbo JC, Holm K, Kummen M, Rudi K, Nwosu F, Valeur J, Gelpi M, Seljeflot I, Ueland PM, Gerstoft J, Ullum H, Aukrust P, Nielsen SD, Trøseid M. 2018. Impact of HIV and Type 2 diabetes on Gut Microbiota Diversity, Tryptophan Catabolism and Endothelial Dysfunction. Sci Rep 8: 6725.
doi: 10.1038/s41598-018-25168-3 PMID:29712976

Arnbjerg CJ, Vestad B, Hov JR, Pedersen KK, Jespersen S, Johannesen HH, Holm K, Halvorsen B, Fallentin E, Hansen AE, Lange T, Kjær A, Trøseid M, Fischer BM, Nielsen SD. 2018. Effect of Lactobacillus rhamnosus GG Supplementation on Intestinal Inflammation Assessed by PET/MRI Scans and Gut Microbiota Composition in HIV-Infected Individuals. J Acquir Immune Defic Syndr 78: 450-457.
doi: 10.1097/QAI.0000000000001693 PMID:29874201

Mattingsdal M, Jentoft S, Tørresen OK, Knutsen H, Hansen MM, Robalo JI, Zagrodzka Z, André C, Gonzalez EB. 2018. A continuous genome assembly of the corkwing wrasse (Symphodus melops). Genomics 110: 399-403.
doi: 10.1016/j.ygeno.2018.04.009 PMID:29665418

Jin Y, Olsen RE, Østensen MA, Gillard GB, Korsvoll SA, Santi N, Gjuvsland AB, Vik JO, Torgersen JS, Sandve SR, Olsen Y. 2018. Transcriptional development of phospholipid and lipoprotein metabolism in different intestinal regions of Atlantic salmon (Salmo salar) fry. BMC Genomics 19: 253.
doi: 10.1186/s12864-018-4651-8 PMID:29661132

Avershina E, Angell IL, Simpson M, Storrø O, Øien T, Johnsen R, Rudi K. 2018. Low Maternal Microbiota Sharing across Gut, Breast Milk and Vagina, as Revealed by 16S rRNA Gene and Reduced Metagenomic Sequencing. Genes (Basel) 9.
doi: 10.3390/genes9050231 PMID:29724017

Yao Y, Zia A, Wyrożemski Ł, Lindeman I, Sandve GK, Qiao SW. 2018. Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. PLoS One 13: e0208484.
doi: 10.1371/journal.pone.0208484 PMID:30517183

Varadharajan S, Sandve SR, Gillard GB, Tørresen OK, Mulugeta TD, Hvidsten TR, Lien S, Asbjørn Vøllestad L, Jentoft S, Nederbragt AJ, Jakobsen KS. 2018. The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication. Genome Biol Evol 10: 2785-2800.
doi: 10.1093/gbe/evy201 PMID:30239729

Trosvik P, de Muinck EJ, Rueness EK, Fashing PJ, Beierschmitt EC, Callingham KR, Kraus JB, Trew TH, Moges A, Mekonnen A, Venkataraman VV, Nguyen N. 2018. Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate. Microbiome 6: 84.
doi: 10.1186/s40168-018-0468-6 PMID:29729671

Star B, Barrett JH, Gondek AT, Boessenkool S. 2018. Ancient DNA reveals the chronology of walrus ivory trade from Norse Greenland. Proc Biol Sci 285.
doi: 10.1098/rspb.2018.0978 PMID:30089624

Wrobel A, Ottoni C, Leo JC, Linke D. 2018. pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System. Front Cell Infect Microbiol 8: 373.
doi: 10.3389/fcimb.2018.00373 PMID:30460204

Malmstrøm M, Britz R, Matschiner M, Tørresen OK, Hadiaty RK, Yaakob N, Tan HH, Jakobsen KS, Salzburger W, Rüber L. 2018. The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes. Genome Biol Evol 10: 1088-1103.
doi: 10.1093/gbe/evy058 PMID:29684203

Langangen Ø, Färber L, Stige LC, Diekert FK, Barth JMI, Matschiner M, Berg PR, Star B, Stenseth NC, Jentoft S, Durant JM. 2019. Ticket to spawn: Combining economic and genetic data to evaluate the effect of climate and demographic structure on spawning distribution in Atlantic cod. Glob Chang Biol 25: 134-143.
doi: 10.1111/gcb.14474 PMID:30300937

Liu X, Luo Y, Li Z, Wei G. 2018. Functional Analysis of a Putative Type III Secretion System in Stress Adaption by Mesorhizobium alhagi CCNWXJ12-2^T. Front Microbiol 9: 263.
doi: 10.3389/fmicb.2018.00263 PMID:29515545

Müller O, Wilson B, Paulsen ML, Rumińska A, Armo HR, Bratbak G, Øvreås L. 2018. Spatiotemporal Dynamics of Ammonia-Oxidizing Thaumarchaeota in Distinct Arctic Water Masses. Front Microbiol 9: 24.
doi: 10.3389/fmicb.2018.00024 PMID:29410658

Mable BK, Brysting AK, Jørgensen MH, Carbonell AK, Kiefer C, Ruiz-Duarte P, Lagesen K, Koch MA. 2018. Adding Complexity to Complexity: Gene Family Evolution in Polyploids. Front Ecol Evol 6.
doi: 10.3389/fevo.2018.00114

Engesmo A, Strand D, Gran-Stadniczeñko S, Edvardsen B, Medlin LK, Eikrem W. 2018. Development of a qPCR assay to detect and quantify ichthyotoxic flagellates along the Norwegian coast, and the first Norwegian record of Fibrocapsa japonica (Raphidophyceae). Harmful Algae 75: 105-117.
doi: 10.1016/j.hal.2018.04.007 PMID:29778220

Sæther T, Paulsen SM, Tungen JE, Vik A, Aursnes M, Holen T, Hansen TV, Nebb HI. 2018. Synthesis and biological evaluations of marine oxohexadecenoic acids: PPARα/γ dual agonism and anti-diabetic target gene effects. Eur J Med Chem 155: 736-753.
doi: 10.1016/j.ejmech.2018.06.034 PMID:29940464

Risnes LF, Christophersen A, Dahal-Koirala S, Neumann RS, Sandve GK, Sarna VK, Lundin KE, Qiao SW, Sollid LM. 2018. Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. J Clin Invest 128: 2642-2650.
doi: 10.1172/JCI98819 PMID:29757191

Lee S, Olsen T, Vinknes KJ, Refsum H, Gulseth HL, Birkeland KI, Drevon CA. 2018. Plasma Sulphur-Containing Amino Acids, Physical Exercise and Insulin Sensitivity in Overweight Dysglycemic and Normal Weight Normoglycemic Men. Nutrients 11.
doi: 10.3390/nu11010010 PMID:30577516

Lund Paulsen M, Müller O, Larsen A, Møller EF, Middelboe M, Sejr MK, Stedmon C. 2019. Biological transformation of Arctic dissolved organic matter in a NE Greenland fjord. Limnol Oceanogr 64: 1014-33.
doi: 10.1002/lno.11091

Moore TM, Zhou Z, Cohn W, Norheim F, Lin AJ, Kalajian N, Strumwasser AR, Cory K, Whitney K, Ho T, Ho T, Lee JL, Rucker DH, Shirihai O, van der Bliek AM, Whitelegge JP, Seldin MM, Lusis AJ, Lee S, Drevon CA, Mahata SK, Turcotte LP, Hevener AL. 2019. The impact of exercise on mitochondrial dynamics and the role of Drp1 in exercise performance and training adaptations in skeletal muscle. Mol Metab 21: 51-67.
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Fuente SG, Camacho E, Peiró-Pastor R, Rastrojo A, Carrasco-Ramiro F, Aguado B, Requena/ JM. 2018. Complete and de novo assembly of the Leishmania braziliensis (M2904) genome. Mem Inst Oswaldo Cruz 114: e180438.
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Dahal-Koirala S, Ciacchi L, Petersen J, Risnes LF, Neumann RS, Christophersen A, Lundin KEA, Reid HH, Qiao SW, Rossjohn J, Sollid LM. 2019. Discriminative T-cell receptor recognition of highly homologous HLA-DQ2-bound gluten epitopes. J Biol Chem 294: 941-952.
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Namouchi A, Guellil M, Kersten O, Hänsch S, Ottoni C, Schmid BV, Pacciani E, Quaglia L, Vermunt M, Bauer EL, Derrick M, Jensen AØ, Kacki S, Cohn SK Jr, Stenseth NC, Bramanti B. 2018. Integrative approach using Yersinia pestis genomes to revisit the historical landscape of plague during the Medieval Period. Proc Natl Acad Sci U S A 115: E11790-E11797.
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Sivertsen A, Janice J, Pedersen T, Wagner TM, Hegstad J, Hegstad K. 2018. The Enterococcus Cassette Chromosome, a Genomic Variation Enabler in Enterococci. mSphere 3.
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Gran-Stadniczeñko S, Egge E, Hostyeva V, Logares R, Eikrem W, Edvardsen B. 2019. Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy. J Eukaryot Microbiol 66: 494-513.
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Stüken A, Haverkamp THA, Dirven HAAM, Gilfillan GD, Leithaug M, Lund V. 2018. Microbial Community Composition of Tap Water and Biofilms Treated with or without Copper-Silver Ionization. Environ Sci Technol 52: 3354-3364.
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Nordgård ASR, Bergland WH, Bakke R, Østgaard K, Bakke I. 2018. Mapping anaerobic sludge bed community adaptations to manure supernatant in biogas reactors. Sci Rep 8: 15870.
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Brynildsrud OB, Pepperell CS, Suffys P, Grandjean L, Monteserin J, Debech N, Bohlin J, Alfsnes K, Pettersson JO, Kirkeleite I, Fandinho F, da Silva MA, Perdigao J, Portugal I, Viveiros M, Clark T, Caws M, Dunstan S, Thai PVK, Lopez B, Ritacco V, Kitchen A, Brown TS, van Soolingen D, O'Neill MB, Holt KE, Feil EJ, Mathema B, Balloux F, Eldholm V. 2018. Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation. Sci Adv 4: eaat5869.
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Hoff SNK, Baalsrud HT, Tooming-Klunderud A, Skage M, Richmond T, Obernosterer G, Shirzadi R, Tørresen OK, Jakobsen KS, Jentoft S. 2019. Long-read sequence capture of the haemoglobin gene clusters across codfish species. Mol Ecol Resour 19: 245-259.
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Lekang K, Hadziavdic K, Sandnes Skaar K, Jonassen I, Thompson EM, Troedsson C. 2018. Development and testing of an 18S rRNA phylogenetic microarray for marine sediments. J Microbiol Methods 154: 95-106.
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Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K. 2018. Unicellular Origin of the Animal MicroRNA Machinery. Curr Biol 28: 3288-3295.e5.
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Strømme P, Groeneweg S, Lima de Souza EC, Zevenbergen C, Torgersbråten A, Holmgren A, Gurcan E, Meima ME, Peeters RP, Visser WE, Høneren Johansson L, Babovic A, Zetterberg H, Heuer H, Frengen E, Misceo D, Visser TJ. 2018. Mutated Thyroid Hormone Transporter OATP1C1 Associates with Severe Brain Hypometabolism and Juvenile Neurodegeneration. Thyroid 28: 1406-1415.
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Hughes T, Sønderby IE, Polushina T, Hansson L, Holmgren A, Athanasiu L, Melbø-Jørgensen C, Hassani S, Hoeffding LK, Herms S, Bergen SE, Karlsson R, Song J, Rietschel M, Nöthen MM, Forstner AJ, Hoffmann P, Hultman CM, Landén M, Cichon S, Werge T, Andreassen OA, Le Hellard S, Djurovic S. 2018. Elevated expression of a minor isoform of ANK3 is a risk factor for bipolar disorder. Transl Psychiatry 8: 210.
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Callejas-Hernández F, Rastrojo A, Poveda C, Gironès N, Fresno M. 2018. Genomic assemblies of newly sequenced Trypanosoma cruzi strains reveal new genomic expansion and greater complexity. Sci Rep 8: 14631.
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Senthakumaran T, Brandal LT, Lindstedt BA, Jørgensen SB, Charnock C, Tunsjø HS. 2018. Implications of stx loss for clinical diagnostics of Shiga toxin-producing Escherichia coli. Eur J Clin Microbiol Infect Dis 37: 2361-2370.
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Guellil M, Kersten O, Namouchi A, Bauer EL, Derrick M, Jensen AØ, Stenseth NC, Bramanti B. 2018. Genomic blueprint of a relapsing fever pathogen in 15th century Scandinavia. Proc Natl Acad Sci U S A 115: 10422-10427.
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Gofton AW, Margos G, Fingerle V, Hepner S, Loh SM, Ryan U, Irwin P, Oskam CL. 2018. Genome-wide analysis of Borrelia turcica and 'Candidatus Borrelia tachyglossi' shows relapsing fever-like genomes with unique genomic links to Lyme disease Borrelia. Infect Genet Evol 66: 72-81.
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López-Muñoz AD, Rastrojo A, Alcamí A. 2018. Complete Genome Sequence of Herpes Simplex Virus 2 Strain 333. Microbiol Resour Announc 7.
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Haverkamp THA, Geslin C, Lossouarn J, Podosokorskaya OA, Kublanov I, Nesbø CL. 2018. Thermosipho spp. Immune System Differences Affect Variation in Genome Size and Geographical Distributions. Genome Biol Evol 10: 2853-2866.
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Orr RJS, Zhao S, Klaveness D, Yabuki A, Ikeda K, Watanabe MM, Shalchian-Tabrizi K. 2018. Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evol Biol 18: 115.
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Ayabina D, Ronning JO, Alfsnes K, Debech N, Brynildsrud OB, Arnesen T, Norheim G, Mengshoel AT, Rykkvin R, Dahle UR, Colijn C, Eldholm V. 2018. Genome-based transmission modelling separates imported tuberculosis from recent transmission within an immigrant population. Microb Genom 4.
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Orr RJ, Waeschenbach A, Enevoldsen EL, Boeve JP, Haugen MN, Voje KL, Porter J, Zágoršek K, Smith AM, Gordon DP, Liow LH. 2018. Bryozoan genera Fenestrulina and Microporella no longer confamilial; multi-gene phylogeny supports separation. 186: 190-9.
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Christensen KA, Rondeau EB, Minkley DR, Leong JS, Nugent CM, Danzmann RG, Ferguson MM, Stadnik A, Devlin RH, Muzzerall R, Edwards M, Davidson WS, Koop BF. 2018. The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly. PLoS One 13: e0204076.
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Taiaroa G, Samuelsen Ø, Kristensen T, Økstad OAL, Heikal A. 2018. Complete Genome Sequence of Pseudomonas aeruginosa K34-7, a Carbapenem-Resistant Isolate of the High-Risk Sequence Type 233. Microbiol Resour Announc 7.
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Tsagaraki TM, Pree B, Leiknes Ø, Larsen A, Bratbak G, Øvreås L, Egge JK, Spanek R, Paulsen ML, Olsen Y, Vadstein O, Thingstad TF. 2018. Bacterial community composition responds to changes in copepod abundance and alters ecosystem function in an Arctic mesocosm study. ISME J 12: 2694-2705.
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Eide M, Rydbeck H, Tørresen OK, Lille-Langøy R, Puntervoll P, Goldstone JV, Jakobsen KS, Stegeman J, Goksøyr A, Karlsen OA. 2018. Independent losses of a xenobiotic receptor across teleost evolution. Sci Rep 8: 10404.
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Rodríguez-Castañeda F, Lemma RB, Cuervo I, Bengtsen M, Moen LM, Ledsaak M, Eskeland R, Gabrielsen OS. 2018. The SUMO protease SENP1 and the chromatin remodeler CHD3 interact and jointly affect chromatin accessibility and gene expression. J Biol Chem 293: 15439-15454.
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Mayerhofer CCK, Awoyemi AO, Moscavitch SD, Lappegård KT, Hov JR, Aukrust P, Hovland A, Lorenzo A, Halvorsen S, Seljeflot I, Gullestad L, Trøseid M, Broch K. 2018. Design of the GutHeart-targeting gut microbiota to treat heart failure-trial: a Phase II, randomized clinical trial. ESC Heart Fail 5: 977-984.
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Adam AC, Skjærven KH, Whatmore P, Moren M, Lie KK. 2018. Parental high dietary arachidonic acid levels modulated the hepatic transcriptome of adult zebrafish (Danio rerio) progeny. PLoS One 13: e0201278.
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Jin Y, Olsen RE, Gillard GB, Østensen MA, Korsvoll SA, Santi N, Vik JO, Sandve SR, Olsen Y. 2018. A systemic study of lipid metabolism regulation in salmon fingerlings and early juveniles fed plant oil. Br J Nutr 120: 653-664.
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Bahram M, Anslan S, Hildebrand F, Bork P, Tedersoo L. 2019. Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment. Environ Microbiol Rep 11: 487-494.
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Müller O, Bang-Andreasen T, White RA 3rd, Elberling B, Taş N, Kneafsey T, Jansson JK, Øvreås L. 2018. Disentangling the complexity of permafrost soil by using high resolution profiling of microbial community composition, key functions and respiration rates. Environ Microbiol 20: 4328-4342.
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Jørgensen TE, Karlsen BO, Emblem Å, Breines R, Andreassen M, Rounge TB, Nederbragt AJ, Jakobsen KS, Nymark M, Ursvik A, Coucheron DH, Jakt LM, Nordeide JT, Moum T, Johansen SD. 2018. Mitochondrial genome variation of Atlantic cod. BMC Res Notes 11: 397.
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Salvadori G, Junges R, Åmdal HA, Chen T, Morrison DA, Petersen FC. 2018. High-resolution profiles of the Streptococcus mitis CSP signaling pathway reveal core and strain-specific regulated genes. BMC Genomics 19: 453.
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de Muinck EJ, Trosvik P. 2018. Individuality and convergence of the infant gut microbiota during the first year of life. Nat Commun 9: 2233.
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Nyerges Á, Csörgő B, Draskovits G, Kintses B, Szili P, Ferenc G, Révész T, Ari E, Nagy I, Bálint B, Vásárhelyi BM, Bihari P, Számel M, Balogh D, Papp H, Kalapis D, Papp B, Pál C. 2018. Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance. Proc Natl Acad Sci U S A 115: E5726-E5735.
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Bakke MJ, Agusti C, Bruusgaard JC, Sundaram AYM, Horsberg TE. 2018. Deltamethrin resistance in the salmon louse, Lepeophtheirus salmonis (Krøyer): Maternal inheritance and reduced apoptosis. Sci Rep 8: 8450.
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Ajayi C, Åberg E, Askarian F, Sollid JUE, Johannessen M, Hanssen AM. 2018. Genetic variability in the sdrD gene in Staphylococcus aureus from healthy nasal carriers. BMC Microbiol 18: 34.
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Wang Y, Lysøe E, Armarego-Marriott T, Erban A, Paruch L, van Eerde A, Bock R, Liu-Clarke J. 2018. Transcriptome and metabolome analyses provide insights into root and root-released organic anion responses to phosphorus deficiency in oat. J Exp Bot 69: 3759-3771.
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Lee S, Norheim F, Gulseth HL, Langleite TM, Aker A, Gundersen TE, Holen T, Birkeland KI, Drevon CA. 2018. Skeletal muscle phosphatidylcholine and phosphatidylethanolamine respond to exercise and influence insulin sensitivity in men. Sci Rep 8: 6531.
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Holm KO, Bækkedal C, Söderberg JJ, Haugen P. 2018. Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing. Genome Biol Evol 10: 1127-1131.
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Lewandowska-Sabat AM, Hansen SF, Solberg TR, Østerås O, Heringstad B, Boysen P, Olsaker I. 2018. MicroRNA expression profiles of bovine monocyte-derived macrophages infected in vitro with two strains of Streptococcus agalactiae. BMC Genomics 19: 241.
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Tørresen OK, Brieuc MSO, Solbakken MH, Sørhus E, Nederbragt AJ, Jakobsen KS, Meier S, Edvardsen RB, Jentoft S. 2018. Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats. BMC Genomics 19: 240.
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Bagi A, Riiser ES, Molland HS, Star B, Haverkamp THA, Sydnes MO, Pampanin DM. 2018. Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil. BMC Microbiol 18: 25.
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Segorbe D, Wilkinson D, Mizeranschi A, Hughes T, Aaløkken R, Váchová L, Palková Z, Gilfillan GD. 2018. An optimized FAIRE procedure for low cell numbers in yeast. Yeast 35: 507-512.
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Eggestøl HØ, Lunde HS, Rønneseth A, Fredman D, Petersen K, Mishra CK, Furmanek T, Colquhoun DJ, Wergeland HI, Haugland GT. 2018. Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure. Sci Rep 8: 5261.
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Pedersen T, Sekyere JO, Govinden U, Moodley K, Sivertsen A, Samuelsen Ø, Essack SY, Sundsfjord A. 2018. Spread of Plasmid-Encoded NDM-1 and GES-5 Carbapenemases among Extensively Drug-Resistant and Pandrug-Resistant Clinical Enterobacteriaceae in Durban, South Africa. Antimicrob Agents Chemother 62.
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Lie KK, Tørresen OK, Solbakken MH, Rønnestad I, Tooming-Klunderud A, Nederbragt AJ, Jentoft S, Sæle Ø. 2018. Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics 19: 186.
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Kotlarz D, Marquardt B, Barøy T, Lee WS, Konnikova L, Hollizeck S, Magg T, Lehle AS, Walz C, Borggraefe I, Hauck F, Bufler P, Conca R, Wall SM, Schumacher EM, Misceo D, Frengen E, Bentsen BS, Uhlig HH, Hopfner KP, Muise AM, Snapper SB, Strømme P, Klein C. 2018. Human TGF-β1 deficiency causes severe inflammatory bowel disease and encephalopathy. Nat Genet 50: 344-348.
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Lingaas F, Guttersrud OA, Arnet E, Espenes A. 2018. Neuronal ceroid lipofuscinosis in Salukis is caused by a single base pair insertion in CLN8. Anim Genet 49: 52-58.
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Fagerlund A, Langsrud S, Moen B, Heir E, Møretrø T. 2018. Complete Genome Sequences of Six Listeria monocytogenes Sequence Type 9 Isolates from Meat Processing Plants in Norway. Genome Announc 6.
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Knutsen TM, Olsen HG, Tafintseva V, Svendsen M, Kohler A, Kent MP, Lien S. 2018. Unravelling genetic variation underlying de novo-synthesis of bovine milk fatty acids. Sci Rep 8: 2179.
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Manousaki T, Tsakogiannis A, Lagnel J, Kyriakis D, Duncan N, Estevez A, Tsigenopoulos CS. 2018. Muscle and liver transcriptome characterization and genetic marker discovery in the farmed meagre, Argyrosomus regius. Mar Genomics 39: 39-44.
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Eichner C, Dondrup M, Nilsen F. 2018. RNA sequencing reveals distinct gene expression patterns during the development of parasitic larval stages of the salmon louse (Lepeophtheirus salmonis). J Fish Dis 41: 1005-1029.
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Olsen-Bergem H, Kristoffersen AK, Bjørnland T, Aas JA. 2018. Is it possible to contaminate the temporomandibular joint by arthrocentesis?. Oral Surg 11: 183-8.
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Vader A, Laughinghouse HD 4th, Griffiths C, Jakobsen KS, Gabrielsen TM. 2018. Proton-pumping rhodopsins are abundantly expressed by microbial eukaryotes in a high-Arctic fjord. Environ Microbiol 20: 890-902.
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Trosvik P, Rueness EK, de Muinck EJ, Moges A, Mekonnen A. 2018. Ecological plasticity in the gastrointestinal microbiomes of Ethiopian Chlorocebus monkeys. Sci Rep 8: 20.
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Rekdal SL, Anmarkrud JA, Johnsen A, Lifjeld JT. 2018. Genotyping strategy matters when analyzing hypervariable major histocompatibility complex-Experience from a passerine bird. Ecol Evol 8: 1680-1692.
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Fehlmann T, Backes C, Alles J, Fischer U, Hart M, Kern F, Langseth H, Rounge T, Umu SU, Kahraman M, Laufer T, Haas J, Staehler C, Ludwig N, Hübenthal M, Meder B, Franke A, Lenhof HP, Meese E, Keller A. 2018. A high-resolution map of the human small non-coding transcriptome. Bioinformatics 34: 1621-1628.
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Baalsrud HT, Tørresen OK, Solbakken MH, Salzburger W, Hanel R, Jakobsen KS, Jentoft S. 2018. De Novo Gene Evolution of Antifreeze Glycoproteins in Codfishes Revealed by Whole Genome Sequence Data. Mol Biol Evol 35: 593-606.
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Ketto IA, Øyaas J, Ådnøy T, Johansen AG, Schüller RB, Narvhus J, Skeie SB. 2018. The influence of milk protein genetic polymorphism on the physical properties of cultured milk. International Dairy Journal 78: 130-7.
doi: 10.1016/j.idairyj.2017.11.009

 

2017

Bujko A, Atlasy N, Landsverk OJB, Richter L, Yaqub S, Horneland R, Øyen O, Aandahl EM, Aabakken L, Stunnenberg HG, Bækkevold ES, Jahnsen FL. 2018. Transcriptional and functional profiling defines human small intestinal macrophage subsets. J Exp Med 215: 441-458.
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Paulsen ML, Nielsen SE, Müller O, Møller EF, Stedmon CA, Juul-Pedersen T, Markager S, Sejr MK, Delgado Huertas A, Larsen A, Middelboe M. 2017. Carbon Bioavailability in a High Arctic Fjord Influenced by Glacial Meltwater, NE Greenland. Front Mar Sci 4.
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Khan R, Junges R, Åmdal HA, Chen T, Morrison DA, Petersen FC. 2017. A positive feedback loop mediated by Sigma X enhances expression of the streptococcal regulator ComR. Sci Rep 7: 5984.
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Lesaulnier CC, Herbold CW, Pelikan C, Berry D, Gérard C, Le Coz X, Gagnot S, Niggemann J, Dittmar T, Singer GA, Loy A. 2017. Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters. Microbiome 5: 126.
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Barth JMI, Damerau M, Matschiner M, Jentoft S, Hanel R. 2017. Genomic Differentiation and Demographic Histories of Atlantic and Indo-Pacific Yellowfin Tuna (Thunnus albacares) Populations. Genome Biol Evol 9: 1084-1098.
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Iversen R, Snir O, Stensland M, Kroll JE, Steinsbø Ø, Korponay-Szabó IR, Lundin KEA, de Souza GA, Sollid LM. 2017. Strong Clonal Relatedness between Serum and Gut IgA despite Different Plasma Cell Origins. Cell Rep 20: 2357-2367.
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Panagopoulos I, Gorunova L, Brunetti M, Agostini A, Andersen HK, Lobmaier I, Bjerkehagen B, Heim S. 2017. Genetic heterogeneity in leiomyomas of deep soft tissue. Oncotarget 8: 48769-48781.
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Baalsrud HT, Voje KL, Tørresen OK, Solbakken MH, Matschiner M, Malmstrøm M, Hanel R, Salzburger W, Jakobsen KS, Jentoft S. 2017. Evolution of Hemoglobin Genes in Codfishes Influenced by Ocean Depth. Sci Rep 7: 7956.
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Orr RJS, Rombauts S, Van de Peer Y, Shalchian-Tabrizi K. 2017. Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples. Genome Announc 5.
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Tronstad RR, Kummen M, Holm K, von Volkmann HL, Anmarkrud JA, Høivik ML, Moum B, Gilja OH, Hausken T, Baines J, Karlsen TH, Fiskerstrand T, Hov JR. 2017. Guanylate Cyclase C Activation Shapes the Intestinal Microbiota in Patients with Familial Diarrhea and Increased Susceptibility for Crohn's Disease. Inflamm Bowel Dis 23: 1752-1761.
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Rydning SL, Backe PH, Sousa MML, Iqbal Z, Øye AM, Sheng Y, Yang M, Lin X, Slupphaug G, Nordenmark TH, Vigeland MD, Bjørås M, Tallaksen CM, Selmer KK. 2017. Novel UCHL1 mutations reveal new insights into ubiquitin processing. Hum Mol Genet 26: 1031-1040.
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Bjørgo K, Fjær R, Mørk HH, Ferdinandusse S, Falkenberg KD, Waterham HR, Øye AM, Sikiric A, Amundsen SS, Kulseth MA, Selmer K. 2017. Biochemical and genetic characterization of an unusual mild PEX3-related Zellweger spectrum disorder. Mol Genet Metab 121: 325-328.
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Low KJ, Ansari M, Abou Jamra R, Clarke A, El Chehadeh S, FitzPatrick DR, Greenslade M, Henderson A, Hurst J, Keller K, Kuentz P, Prescott T, Roessler F, Selmer KK, Schneider MC, Stewart F, Tatton-Brown K, Thevenon J, Vigeland MD, Vogt J, Willems M, Zonana J, Study DD, Smithson SF. 2017. PUF60 variants cause a syndrome of ID, short stature, microcephaly, coloboma, craniofacial, cardiac, renal and spinal features. Eur J Hum Genet 25: 552-559.
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Mero IL, Mørk HH, Sheng Y, Blomhoff A, Opheim GL, Erichsen A, Vigeland MD, Selmer KK. 2017. Homozygous KIDINS220 loss-of-function variants in fetuses with cerebral ventriculomegaly and limb contractures. Hum Mol Genet 26: 3792-3796.
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Lanzén A, Lekang K, Jonassen I, Thompson EM, Troedsson C. 2017. DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments. PLoS One 12: e0179443.
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Boumans L, Hogner S, Brittain J, Johnsen A. 2017. Ecological speciation by temporal isolation in a population of the stonefly Leuctra hippopus (Plecoptera, Leuctridae). Ecol Evol 7: 1635-1649.
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Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp THA. 2017. Temporal dynamics in microbial soil communities at anthrax carcass sites. BMC Microbiol 17: 206.
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Vander Roost J, Thorseth IH, Dahle H. 2017. Microbial analysis of Zetaproteobacteria and co-colonizers of iron mats in the Troll Wall Vent Field, Arctic Mid-Ocean Ridge. PLoS One 12: e0185008.
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Lekva T, Roland MCP, Michelsen AE, Friis CM, Aukrust P, Bollerslev J, Henriksen T, Ueland T. 2017. Large Reduction in Adiponectin During Pregnancy Is Associated With Large-for-Gestational-Age Newborns. J Clin Endocrinol Metab 102: 2552-2559.
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Dunne KA, Chaudhuri RR, Rossiter AE, Beriotto I, Browning DF, Squire D, Cunningham AF, Cole JA, Loman N, Henderson IR. 2017. Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain. Microb Genom 3: mgen000106.
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Ansar M, Riazuddin S, Sarwar MT, Makrythanasis P, Paracha SA, Iqbal Z, Khan J, Assir MZ, Hussain M, Razzaq A, Polla DL, Taj AS, Holmgren A, Batool N, Misceo D, Iwaszkiewicz J, de Brouwer APM, Guipponi M, Hanquinet S, Zoete V, Santoni FA, Frengen E, Ahmed J, Riazuddin S, van Bokhoven H, Antonarakis SE. 2018. Biallelic variants in LINGO1 are associated with autosomal recessive intellectual disability, microcephaly, speech and motor delay. Genet Med 20: 778-784.
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Roy B, Neumann RS, Snir O, Iversen R, Sandve GK, Lundin KEA, Sollid LM. 2017. High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease. J Immunol 199: 782-791.
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Berg PR, Star B, Pampoulie C, Bradbury IR, Bentzen P, Hutchings JA, Jentoft S, Jakobsen KS. 2017. Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions. Heredity (Edinb) 119: 418-428.
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Pettersson JH, Shi M, Bohlin J, Eldholm V, Brynildsrud OB, Paulsen KM, Andreassen Å, Holmes EC. 2017. Characterizing the virome of Ixodes ricinus ticks from northern Europe. Sci Rep 7: 10870.
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Sørhus E, Incardona JP, Furmanek T, Goetz GW, Scholz NL, Meier S, Edvardsen RB, Jentoft S. 2017. Novel adverse outcome pathways revealed by chemical genetics in a developing marine fish. Elife 6.
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Berge-Seidl V, Pihlstrøm L, Maple-Grødem J, Forsgren L, Linder J, Larsen JP, Tysnes OB, Toft M. 2017. The GBA variant E326K is associated with Parkinson's disease and explains a genome-wide association signal. Neurosci Lett 658: 48-52.
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Brandrud MK, Paun O, Lorenzo MT, Nordal I, Brysting AK. 2017. RADseq provides evidence for parallel ecotypic divergence in the autotetraploid Cochlearia officinalis in Northern Norway. Sci Rep 7: 5573.
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Acuña SM, Aoki JI, Laranjeira-Silva MF, Zampieri RA, Fernandes JCR, Muxel SM, Floeter-Winter LM. 2017. Arginase expression modulates nitric oxide production in Leishmania (Leishmania) amazonensis. PLoS One 12: e0187186.
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Aoki JI, Muxel SM, Zampieri RA, Laranjeira-Silva MF, Müller KE, Nerland AH, Floeter-Winter LM. 2017. RNA-seq transcriptional profiling of Leishmania amazonensis reveals an arginase-dependent gene expression regulation. PLoS Negl Trop Dis 11: e0006026.
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Umu SU, Langseth H, Bucher-Johannessen C, Fromm B, Keller A, Meese E, Lauritzen M, Leithaug M, Lyle R, Rounge TB. 2018. A comprehensive profile of circulating RNAs in human serum. RNA Biol 15: 242-250.
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de Muinck EJ, Lundin KEA, Trosvik P. 2017. Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota. mSystems 2.
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Margos G, Hepner S, Mang C, Marosevic D, Reynolds SE, Krebs S, Sing A, Derdakova M, Reiter MA, Fingerle V. 2017. Lost in plasmids: next generation sequencing and the complex genome of the tick-borne pathogen Borrelia burgdorferi. BMC Genomics 18: 422.
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Ekblad B, Nissen-Meyer J, Kristensen T. 2017. Whole-genome sequencing of mutants with increased resistance against the two-peptide bacteriocin plantaricin JK reveals a putative receptor and potential docking site. PLoS One 12: e0185279.
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Reynolds HT, Slot JC, Divon HH, Lysøe E, Proctor RH, Brown DW. 2017. Differential Retention of Gene Functions in a Secondary Metabolite Cluster. Mol Biol Evol 34: 2002-2015.
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Lysøe E, Dees MW, Brurberg MB. 2017. A Three-Way Transcriptomic Interaction Study of a Biocontrol Agent (Clonostachys rosea), a Fungal Pathogen (Helminthosporium solani), and a Potato Host (Solanum tuberosum). Mol Plant Microbe Interact 30: 646-655.
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Dees MW, Lysøe E, Rossmann S, Perminow J, Brurberg MB. 2017. Pectobacterium polaris sp. nov., isolated from potato (Solanum tuberosum). Int J Syst Evol Microbiol 67: 5222-5229.
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Maršíková J, Wilkinson D, Hlaváček O, Gilfillan GD, Mizeranschi A, Hughes T, Begany M, Rešetárová S, Váchová L, Palková Z. 2017. Metabolic differentiation of surface and invasive cells of yeast colony biofilms revealed by gene expression profiling. BMC Genomics 18: 814.
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González-de la Fuente S, Peiró-Pastor R, Rastrojo A, Moreno J, Carrasco-Ramiro F, Requena JM, Aguado B. 2017. Resequencing of the Leishmania infantum (strain JPCM5) genome and de novo assembly into 36 contigs. Sci Rep 7: 18050.
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Falch CM, Sundaram AYM, Øystese KA, Normann KR, Lekva T, Silamikelis I, Eieland AK, Andersen M, Bollerslev J, Olarescu NC. 2018. Gene expression profiling of fast- and slow-growing non-functioning gonadotroph pituitary adenomas. Eur J Endocrinol 178: 295-307.
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van Son M, Tremoen NH, Gaustad AH, Myromslien FD, Våge DI, Stenseth EB, Zeremichael TT, Grindflek E. 2017. RNA sequencing reveals candidate genes and polymorphisms related to sperm DNA integrity in testis tissue from boars. BMC Vet Res 13: 362.
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Pettersen VK, Steinsland H, Wiker HG. 2018. Comparative Proteomics of Enterotoxigenic Escherichia coli Reveals Differences in Surface Protein Production and Similarities in Metabolism. J Proteome Res 17: 325-336.
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Sarropoulou E, Sundaram AYM, Kaitetzidou E, Kotoulas G, Gilfillan GD, Papandroulakis N, Mylonas CC, Magoulas A. 2017. Full genome survey and dynamics of gene expression in the greater amberjack Seriola dumerili. Gigascience 6: 1-13.
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de Muinck EJ, Trosvik P, Gilfillan GD, Hov JR, Sundaram AYM. 2017. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform. Microbiome 5: 68.
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Nordgård ASR, Bergland WH, Vadstein O, Mironov V, Bakke R, Østgaard K, Bakke I. 2017. Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaea. Sci Rep 7: 15077.
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McLeod A, Mosleth EF, Rud I, Branco Dos Santos F, Snipen L, Liland KH, Axelsson L. 2017. Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome. PLoS One 12: e0187542.
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Panagopoulos I, Gorunova L, Torkildsen S, Tjønnfjord GE, Micci F, Heim S. 2017. DEK-NUP214-Fusion Identified by RNA-Sequencing of an Acute Myeloid Leukemia with t(9;12)(q34;q15). Cancer Genomics Proteomics 14: 437-443.
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Lefevre S, Stecyk JAW, Torp MK, Løvold LY, Sørensen C, Johansen IB, Stensløkken KO, Couturier CS, Sloman KA, Nilsson GE. 2017. Re-oxygenation after anoxia induces brain cell death and memory loss in the anoxia-tolerant crucian carp. J Exp Biol 220: 3883-3895.
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Aoki JI, Muxel SM, Zampieri RA, Acuña SM, Fernandes JCR, Vanderlinde RH, Sales MCOP, Floeter-Winter LM. 2017. L-arginine availability and arginase activity: Characterization of amino acid permease 3 in Leishmania amazonensis. PLoS Negl Trop Dis 11: e0006025.
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Popperud TH, Viken MK, Kerty E, Lie BA. 2017. Juvenile myasthenia gravis in Norway: HLA-DRB1*04:04 is positively associated with prepubertal onset. PLoS One 12: e0186383.
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Skaftnesmo KO, Edvardsen RB, Furmanek T, Crespo D, Andersson E, Kleppe L, Taranger GL, Bogerd J, Schulz RW, Wargelius A. 2017. Integrative testis transcriptome analysis reveals differentially expressed miRNAs and their mRNA targets during early puberty in Atlantic salmon. BMC Genomics 18: 801.
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Tedersoo L, Tooming-Klunderud A, Anslan S. 2018. PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives. New Phytol 217: 1370-1385.
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de Welzen L, Eldholm V, Maharaj K, Manson AL, Earl AM, Pym AS. 2017. Whole-Transcriptome and -Genome Analysis of Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolates Identifies Downregulation of ethA as a Mechanism of Ethionamide Resistance. Antimicrob Agents Chemother 61.
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Samuelsen Ø, Hansen F, Aasnæs B, Hasman H, Lund BA, Leiros HS, Lilje B, Janice J, Jakobsen L, Littauer P, Søes LM, Holzknecht BJ, Andersen LP, Stegger M, Andersen PS, Hammerum AM. 2018. Dissemination and Characteristics of a Novel Plasmid-Encoded Carbapenem-Hydrolyzing Class D β-Lactamase, OXA-436, Found in Isolates from Four Patients at Six Different Hospitals in Denmark. Antimicrob Agents Chemother 62.
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Snir O, Chen X, Gidoni M, du Pré MF, Zhao Y, Steinsbø Ø, Lundin KE, Yaari G, Sollid LM. 2017. Stereotyped antibody responses target posttranslationally modified gluten in celiac disease. JCI Insight 2.
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Wrobel A, Ottoni C, Leo JC, Gulla S, Linke D. 2018. The repeat structure of two paralogous genes, Yersinia ruckeri invasin (yrInv) and a "Y. ruckeri invasin-like molecule", (yrIlm) sheds light on the evolution of adhesive capacities of a fish pathogen. J Struct Biol 201: 171-183.
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Junges R, Salvadori G, Shekhar S, Åmdal HA, Periselneris JN, Chen T, Brown JS, Petersen FC. 2017. A Quorum-Sensing System That Regulates Streptococcus pneumoniae Biofilm Formation and Surface Polysaccharide Production. mSphere 2: e00324-17.
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Orr RJS, Rombauts S, Van de Peer Y, Shalchian-Tabrizi K. 2017. Draft Genome Sequences of Two Unclassified Chitinophagaceae Bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples. Genome Announc 5.
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Orr RJS, Rombauts S, Van de Peer Y, Shalchian-Tabrizi K. 2017. Draft Genome Sequences of Two Unclassified Bacteria, Hydrogenophaga sp. Strains IBVHS1 and IBVHS2, Isolated from Environmental Samples. Genome Announc 5.
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Star B, Boessenkool S, Gondek AT, Nikulina EA, Hufthammer AK, Pampoulie C, Knutsen H, André C, Nistelberger HM, Dierking J, Petereit C, Heinrich D, Jakobsen KS, Stenseth NC, Jentoft S, Barrett JH. 2017. Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany. Proc Natl Acad Sci U S A 114: 9152-9157.
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Micci F, Brunetti M, Dal Cin P, Nucci MR, Gorunova L, Heim S, Panagopoulos I. 2017. Fusion of the genes BRD8 and PHF1 in endometrial stromal sarcoma. Genes Chromosomes Cancer 56: 841-845.
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Margos G, Hepner S, Mang C, Sing A, Liebl B, Fingerle V. 2017. Completed Genome Sequences of Borrelia burgdorferi Sensu Stricto B31(NRZ) and Closely Related Patient Isolates from Europe. Genome Announc 5.
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Thode SK, Bækkedal C, Söderberg JJ, Hjerde E, Hansen H, Haugen P. 2017. Construction of a fur null mutant and RNA-sequencing provide deeper global understanding of the Aliivibrio salmonicida Fur regulon. PeerJ 5: e3461.
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Osei Sekyere J, Amoako DG. 2017. Genomic and phenotypic characterisation of fluoroquinolone resistance mechanisms in Enterobacteriaceae in Durban, South Africa. PLoS One 12: e0178888.
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Barth JMI, Berg PR, Jonsson PR, Bonanomi S, Corell H, Hemmer-Hansen J, Jakobsen KS, Johannesson K, Jorde PE, Knutsen H, Moksnes PO, Star B, Stenseth NC, Svedäng H, Jentoft S, André C. 2017. Genome architecture enables local adaptation of Atlantic cod despite high connectivity. Mol Ecol 26: 4452-4466.
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Elgvin TO, Trier CN, Tørresen OK, Hagen IJ, Lien S, Nederbragt AJ, Ravinet M, Jensen H, Sætre GP. 2017. The genomic mosaicism of hybrid speciation. Sci Adv 3: e1602996.
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Heikal A, Samuelsen Ø, Kristensen T, Økstad OA. 2017. Complete Genome Sequence of a Multidrug-Resistant, bla_NDM-1-Expressing Klebsiella pneumoniae K66-45 Clinical Isolate from Norway. Genome Announc 5.
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Egger B, Bachmann L, Fromm B. 2017. Atp8 is in the ground pattern of flatworm mitochondrial genomes. BMC Genomics 18: 414.
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Freeman MA, Fuss J, Kristmundsson Á, Bjorbækmo MFM, Mangot JF, Del Campo J, Keeling PJ, Shalchian-Tabrizi K, Bass D. 2017. X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates. Curr Biol 27: 1645-1651.e3.
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Panagopoulos I, Gorunova L, Lobmaier I, Bjerkehagen B, Heim S. 2017. Identification of SETD2-NF1 fusion gene in a pediatric spindle cell tumor with the chromosomal translocation t(3;17)(p21;q12). Oncol Rep 37: 3181-3188.
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Irene Roalkvam, Karine Drønen. 2017. Two Case Studies of Corrosion from an Injection Water Pipeline in the North Sea. Microbiologically Influenced Corrosion in the Upstream Oil and Gas Industry.
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Fuglerud BM, Lemma RB, Wanichawan P, Sundaram AYM, Eskeland R, Gabrielsen OS. 2017. A c-Myb mutant causes deregulated differentiation due to impaired histone binding and abrogated pioneer factor function. Nucleic Acids Res 45: 7681-7696.
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Leandro T, da Costa MS, Sanz JL, Amils R. 2017. Complete Genome Sequence of Tessaracoccus sp. Strain T2.5-30 Isolated from 139.5 Meters Deep on the Subsurface of the Iberian Pyritic Belt. Genome Announc 5.
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Székely AJ, Langenheder S. 2017. Dispersal timing and drought history influence the response of bacterioplankton to drying-rewetting stress. ISME J 11: 1764-1776.
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Holm I, Spildrejorde M, Stadheim B, Eiklid KL, Samarakoon PS. 2017. Whole exome sequencing of sporadic patients with Currarino Syndrome: A report of three trios. Gene 624: 50-55.
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Khomich M, Davey ML, Kauserud H, Rasconi S, Andersen T. 2017. Fungal communities in Scandinavian lakes along a longitudinal gradient. Fungal Ecology 27: 36-46.
doi: 10.1016/j.funeco.2017.01.008

Wilson B, Müller O, Nordmann EL, Seuthe L, Bratbak G, Øvreås L. 2017. Changes in Marine Prokaryote Composition with Season and Depth Over an Arctic Polar Year. Front Mar Sci 4.
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Iqbal Z, Rydning SL, Wedding IM, Koht J, Pihlstrøm L, Rengmark AH, Henriksen SP, Tallaksen CM, Toft M. 2017. Targeted high throughput sequencing in hereditary ataxia and spastic paraplegia. PLoS One 12: e0174667.
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Kovi MR, Amdahl H, Alsheikh M, Rognli OA. 2017. De novo and reference transcriptome assembly of transcripts expressed during flowering provide insight into seed setting in tetraploid red clover. Sci Rep 7: 44383.
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Lee S, Norheim F, Gulseth HL, Langleite TM, Kolnes KJ, Tangen DS, Stadheim HK, Gilfillan GD, Holen T, Birkeland KI, Jensen J, Drevon CA. 2017. Interaction between plasma fetuin-A and free fatty acids predicts changes in insulin sensitivity in response to long-term exercise. Physiol Rep 5.
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Gonzalez-Silva BM, Rønning AJ, Andreassen IK, Bakke I, Cervantes FJ, Østgaard K, Vadstein O. 2017. Changes in the microbial community of an anammox consortium during adaptation to marine conditions revealed by 454 pyrosequencing. Appl Microbiol Biotechnol.
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Olsen LC, O'Reilly KC, Liabakk NB, Witter MP, Sætrom P. 2017. MicroRNAs contribute to postnatal development of laminar differences and neuronal subtypes in the rat medial entorhinal cortex. Brain Struct Funct.
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Sundaram A, Tengs T, Grimholt U. 2017. Issues with RNA-seq analysis in non-model organisms: A salmonid example. Dev Comp Immunol 75: 38-47.
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Osei Sekyere J, Amoako DG. 2017. Carbonyl Cyanide m-Chlorophenylhydrazine (CCCP) Reverses Resistance to Colistin, but Not to Carbapenems and Tigecycline in Multidrug-Resistant Enterobacteriaceae. Front Microbiol 8: 228.
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Panagopoulos I, Gorunova L, Torkildsen S, Tierens A, Heim S, Micci F. 2017. FAM53B truncation caused by t(10;19)(q26;q13) chromosome translocation in acute lymphoblastic leukemia. Oncol Lett 13: 2216-2220.
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Brunetti M, Agostini A, Davidson B, Tropé CG, Heim S, Panagopoulos I, Micci F. 2017. Recurrent fusion transcripts in squamous cell carcinomas of the vulva. Oncotarget 8: 16843-16850.
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Torkildsen S, Brunetti M, Gorunova L, Spetalen S, Beiske K, Heim S, Panagopoulos I. 2017. Rearrangement of the Chromatin Organizer Special AT-rich Binding Protein 1 Gene, SATB1, Resulting from a t(3;5)(p24;q14) Chromosomal Translocation in Acute Myeloid Leukemia. Anticancer Res 37: 693-698.
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van der Helm E, Imamovic L, Hashim Ellabaan MM, van Schaik W, Koza A, Sommer MOA. 2017. Rapid resistome mapping using nanopore sequencing. Nucleic Acids Res 45: e61.
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Davey ML, Skogen MJ, Heegaard E, Halvorsen R, Kauserud H, Ohlson M. 2017. Host and tissue variations overshadow the response of boreal moss-associated fungal communities to increased nitrogen load. Mol Ecol 26: 571-588.
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Gran-Stadniczeñko S, Šupraha L, Egge ED, Edvardsen B. 2017. Haptophyte Diversity and Vertical Distribution Explored by 18S and 28S Ribosomal RNA Gene Metabarcoding and Scanning Electron Microscopy. J Eukaryot Microbiol 64: 514-532.
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Tuveng TR, Hagen LH, Mekasha S, Frank J, Arntzen MØ, Vaaje-Kolstad G, Eijsink VG. 2017. Genomic, proteomic and biochemical analysis of the chitinolytic machinery of Serratia marcescens BJL200. Biochim Biophys Acta 1865: 414-421.
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Landsverk OJ, Snir O, Casado RB, Richter L, Mold JE, Réu P, Horneland R, Paulsen V, Yaqub S, Aandahl EM, Øyen OM, Thorarensen HS, Salehpour M, Possnert G, Frisén J, Sollid LM, Baekkevold ES, Jahnsen FL. 2017. Antibody-secreting plasma cells persist for decades in human intestine. J Exp Med 214: 309-317.
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Malmstrøm M, Matschiner M, Tørresen OK, Jakobsen KS, Jentoft S. 2017. Whole genome sequencing data and de novo draft assemblies for 66 teleost species. Sci Data 4: 160132.
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Tørresen OK, Star B, Jentoft S, Reinar WB, Grove H, Miller JR, Walenz BP, Knight J, Ekholm JM, Peluso P, Edvardsen RB, Tooming-Klunderud A, Skage M, Lien S, Jakobsen KS, Nederbragt AJ. 2017. An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics 18: 95.
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Malde K, Seliussen BB, Quintela M, Dahle G, Besnier F, Skaug HJ, Øien N, Solvang HK, Haug T, Skern-Mauritzen R, Kanda N, Pastene LA, Jonassen I, Glover KA. 2017. Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species. BMC Genomics 18: 76.
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Wissuwa J, Bauer SL, Steen IH, Stokke R. 2017. Complete genome sequence of Lutibacter profundi LP1^T isolated from an Arctic deep-sea hydrothermal vent system. Stand Genomic Sci 12: 5.
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Ketto IA, Knutsen TM, Øyaas J, Heringstad B, Ådnøy T, Devold TG, Skeie SB. 2017. Effects of milk protein polymorphism and composition, casein micelle size and salt distribution on the milk coagulation properties in Norwegian Red cattle. International Dairy Journal 70: 55-64.
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Khomich M, Kauserud H, Logares R, Rasconi S, Andersen T. 2017. Planktonic protistan communities in lakes along a large-scale environmental gradient. FEMS Microbiol Ecol 93.
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2016

Lund C, Striano P, Sorte HS, Parisi P, Iacomino M, Sheng Y, Vigeland MD, Øye AM, Møller RS, Selmer KK, Zara F. 2016. Exome Sequencing Fails to Identify the Genetic Cause of Aicardi Syndrome. Mol Syndromol 7: 234-238.
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Moen MN, Fjær R, Hamdani EH, Laerdahl JK, Menchini RJ, Vigeland MD, Sheng Y, Undlien DE, Hassel B, Salih MA, El Khashab HY, Selmer KK, Chaudhry FA. 2016. Pathogenic variants in KCTD7 perturb neuronal K+ fluxes and glutamine transport. Brain 139: 3109-3120.
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Kuehn HS, Boisson B, Cunningham-Rundles C, Reichenbach J, Stray-Pedersen A, Gelfand EW, Maffucci P, Pierce KR, Abbott JK, Voelkerding KV, South ST, Augustine NH, Bush JS, Dolen WK, Wray BB, Itan Y, Cobat A, Sorte HS, Ganesan S, Prader S, Martins TB, Lawrence MG, Orange JS, Calvo KR, Niemela JE, Casanova JL, Fleisher TA, Hill HR, Kumánovics A, Conley ME, Rosenzweig SD. 2016. Loss of B Cells in Patients with Heterozygous Mutations in IKAROS. N Engl J Med 374: 1032-43.
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Velmurugan J, Mollison E, Barth S, Marshall D, Milne L, Creevey CJ, Lynch B, Meally H, McCabe M, Milbourne D. 2016. An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly. Ann Bot 118: 71-87.
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Liljegren MM, de Muinck EJ, Trosvik P. 2016. Microsatellite Length Scoring by Single Molecule Real Time Sequencing - Effects of Sequence Structure and PCR Regime. PLoS One 11: e0159232.
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Eldholm V, Pettersson JH, Brynildsrud OB, Kitchen A, Rasmussen EM, Lillebaek T, Rønning JO, Crudu V, Mengshoel AT, Debech N, Alfsnes K, Bohlin J, Pepperell CS, Balloux F. 2016. Armed conflict and population displacement as drivers of the evolution and dispersal of Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 113: 13881-13886.
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Gervin K, Andreassen BK, Hjorthaug HS, Carlsen KC, Carlsen KH, Undlien DE, Lyle R, Munthe-Kaas MC. 2016. Intra-individual changes in DNA methylation not mediated by cell-type composition are correlated with aging during childhood. Clin Epigenetics 8: 110.
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Aamot HU, Hofgaard IS, Lysøe E. 2017. Complete genome sequence of Luteibacter rhizovicinus strain LJ96T, isolated from the rhizosphere of barley (Hordeum vulgare L.) in Denmark. Genom Data 11: 104-105.
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Dybwad M, Aarskaug T, Fykse EM, Henie Madslien E, Blatny JM. 2016. Complete Genome Sequences of Six Legionella pneumophila Isolates from Two Collocated Outbreaks of Legionnaires' Disease in 2005 and 2008 in Sarpsborg/Fredrikstad, Norway. Genome Announc 4.
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Skauli N, Wallace S, Chiang SC, Barøy T, Holmgren A, Stray-Pedersen A, Bryceson YT, Strømme P, Frengen E, Misceo D. 2016. Novel PIGT Variant in Two Brothers: Expansion of the Multiple Congenital Anomalies-Hypotonia Seizures Syndrome 3 Phenotype. Genes (Basel) 7.
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Nistelberger HM, Smith O, Wales N, Star B, Boessenkool S. 2016. The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains. Sci Rep 6: 37347.
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Dees MW, Brurberg MB, Lysøe E. 2016. Complete genome sequence of the biofilm-forming Microbacterium sp. strain BH-3-3-3, isolated from conventional field-grown lettuce (Lactuca sativa) in Norway. Genom Data 11: 7-8.
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Lee S, Norheim F, Langleite TM, Noreng HJ, Storås TH, Afman LA, Frost G, Bell JD, Thomas EL, Kolnes KJ, Tangen DS, Stadheim HK, Gilfillan GD, Gulseth HL, Birkeland KI, Jensen J, Drevon CA, Holen T. 2016. Effect of energy restriction and physical exercise intervention on phenotypic flexibility as examined by transcriptomics analyses of mRNA from adipose tissue and whole body magnetic resonance imaging. Physiol Rep 4.
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Dees MW, Brurberg MB, Lysøe E. 2016. Complete genome sequence of the biofilm-forming Curtobacterium sp. strain BH-2-1-1, isolated from lettuce (Lactuca sativa) originating from a conventional field in Norway. Genom Data 10: 135-136.
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Boessenkool S, Hanghøj K, Nistelberger HM, Der Sarkissian C, Gondek AT, Orlando L, Barrett JH, Star B. 2017. Combining bleach and mild predigestion improves ancient DNA recovery from bones. Mol Ecol Resour 17: 742-751.
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Olsen HG, Knutsen TM, Lewandowska-Sabat AM, Grove H, Nome T, Svendsen M, Arnyasi M, Sodeland M, Sundsaasen KK, Dahl SR, Heringstad B, Hansen HH, Olsaker I, Kent MP, Lien S. 2016. Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production. Genet Sel Evol 48: 79.
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Star B, Hansen MH, Skage M, Bradbury IR, Godiksen JA, Kjesbu OS, Jentoft S. 2016. Preferential amplification of repetitive DNA during whole genome sequencing library creation from historic samples. STAR: Science & Technology of Archaeological Research 2: 36-45.
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Sundaram AY, Hughes T, Biondi S, Bolduc N, Bowman SK, Camilli A, Chew YC, Couture C, Farmer A, Jerome JP, Lazinski DW, McUsic A, Peng X, Shazand K, Xu F, Lyle R, Gilfillan GD. 2016. A comparative study of ChIP-seq sequencing library preparation methods. BMC Genomics 17: 816.
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Johannessen LE, Panagopoulos I, Haugvik SP, Gladhaug IP, Heim S, Micci F. 2016. Upregulation of INS-IGF2 read-through expression and identification of a novel INS-IGF2 splice variant in insulinomas. Oncol Rep.
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Ray JL, Althammer J, Skaar KS, Simonelli P, Larsen A, Stoecker D, Sazhin A, Ijaz UZ, Quince C, Nejstgaard JC, Frischer M, Pohnert G, Troedsson C. 2016. Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Mol Ecol.
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Panagopoulos I, Gorunova L, Viset T, Heim S. 2016. Gene fusions AHRR-NCOA2, NCOA2-ETV4, ETV4-AHRR, P4HA2-TBCK, and TBCK-P4HA2 resulting from the translocations t(5;8;17)(p15;q13;q21) and t(4;5)(q24;q31) in a soft tissue angiofibroma. Oncol Rep.
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Panagopoulos I, Torkildsen S, Gorunova L, Ulvmoen A, Tierens A, Zeller B, Heim S. 2016. RUNX1 truncation resulting from a cryptic and novel t(6;21)(q25;q22) chromosome translocation in acute myeloid leukemia: A case report. Oncol Rep.
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Anmarkrud JA, Lifjeld JT. 2017. Complete mitochondrial genomes of eleven extinct or possibly extinct bird species. Mol Ecol Resour 17: 334-341.
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Sorte HS, Osnes LT, Fevang B, Aukrust P, Erichsen HC, Backe PH, Abrahamsen TG, Kittang OB, Øverland T, Jhangiani SN, Muzny DM, Vigeland MD, Samarakoon P, Gambin T, Akdemir ZH, Gibbs RA, Rødningen OK, Lyle R, Lupski JR, Stray-Pedersen A. 2016. A potential founder variant in CARMIL2/RLTPR in three Norwegian families with warts, molluscum contagiosum, and T-cell dysfunction. Mol Genet Genomic Med 4: 604-16.
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Henriksen EK, Jørgensen KK, Kaveh F, Holm K, Hamm D, Olweus J, Melum E, Chung BK, Eide TJ, Lundin KE, Boberg KM, Karlsen TH, Hirschfield GM, Liaskou E. 2017. Gut and liver T-cells of common clonal origin in primary sclerosing cholangitis-inflammatory bowel disease. J Hepatol 66: 116-122.
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Fiorito E, Sharma Y, Gilfillan S, Wang S, Singh SK, Satheesh SV, Katika MR, Urbanucci A, Thiede B, Mills IG, Hurtado A. 2016. CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions. Nucleic Acids Res 44: 10588-10602.
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Williamson A, De Santi C, Altermark B, Karlsen C, Hjerde E. 2016. Complete genome sequence of Halomonas sp. R5-57. Stand Genomic Sci 11: 62.
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Jørgensen SF, Trøseid M, Kummen M, Anmarkrud JA, Michelsen AE, Osnes LT, Holm K, Høivik ML, Rashidi A, Dahl CP, Vesterhus M, Halvorsen B, Mollnes TE, Berge RK, Moum B, Lundin KE, Fevang B, Ueland T, Karlsen TH, Aukrust P, Hov JR. 2016. Altered gut microbiota profile in common variable immunodeficiency associates with levels of lipopolysaccharide and markers of systemic immune activation. Mucosal Immunol 9: 1455-1465.
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Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp TH. 2016. Draft Genome Sequences of Two Bacillus anthracis Strains from Etosha National Park, Namibia. Genome Announc 4.
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Malmstrøm M, Matschiner M, Tørresen OK, Star B, Snipen LG, Hansen TF, Baalsrud HT, Nederbragt AJ, Hanel R, Salzburger W, Stenseth NC, Jakobsen KS, Jentoft S. 2016. Evolution of the immune system influences speciation rates in teleost fishes. Nat Genet 48: 1204-10.
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Møretrø T, Moen B, Heir E, Hansen AÅ, Langsrud S. 2016. Contamination of salmon fillets and processing plants with spoilage bacteria. Int J Food Microbiol 237: 98-108.
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Star B, Tørresen OK, Nederbragt AJ, Jakobsen KS, Pampoulie C, Jentoft S. 2016. Genomic characterization of the Atlantic cod sex-locus. Sci Rep 6: 31235.
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Langleite TM, Jensen J, Norheim F, Gulseth HL, Tangen DS, Kolnes KJ, Heck A, Storås T, Grøthe G, Dahl MA, Kielland A, Holen T, Noreng HJ, Stadheim HK, Bjørnerud A, Johansen EI, Nellemann B, Birkeland KI, Drevon CA. 2016. Insulin sensitivity, body composition and adipose depots following 12 w combined endurance and strength training in dysglycemic and normoglycemic sedentary men. Arch Physiol Biochem.
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Panagopoulos I, Gorunova L, Lund-Iversen M, Lobmaier I, Bjerkehagen B, Heim S. 2016. Recurrent fusion of the genes FN1 and ALK in gastrointestinal leiomyomas. Mod Pathol 29: 1415-1423.
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Pedurupillay CR, Landsend EC, Vigeland MD, Ansar M, Frengen E, Misceo D, Strømme P. 2016. Segregation of Incomplete Achromatopsia and Alopecia Due to PDE6H and LPAR6 Variants in a Consanguineous Family from Pakistan. Genes (Basel) 7.
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Gante HF, Matschiner M, Malmstrøm M, Jakobsen KS, Jentoft S, Salzburger W. 2016. Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika. Mol Ecol 25: 6143-6161.
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Sarropoulou E, Tsalafouta A, Sundaram AY, Gilfillan GD, Kotoulas G, Papandroulakis N, Pavlidis M. 2016. Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata). BMC Genomics 17: 506.
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Lekva T, Lyle R, Roland MC, Friis C, Bianchi DW, Jaffe IZ, Norwitz ER, Bollerslev J, Henriksen T, Ueland T. 2016. Gene expression in term placentas is regulated more by spinal or epidural anesthesia than by late-onset preeclampsia or gestational diabetes mellitus. Sci Rep 6: 29715.
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Olsen TK, Panagopoulos I, Gorunova L, Micci F, Andersen K, Kilen Andersen H, Meling TR, Due-Tønnessen B, Scheie D, Heim S, Brandal P. 2016. Novel fusion genes and chimeric transcripts in ependymal tumors. Genes Chromosomes Cancer 55: 944-953.
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Valen R, Eilertsen M, Edvardsen RB, Furmanek T, Rønnestad I, van der Meeren T, Karlsen Ø, Nilsen TO, Helvik JV. 2016. The two-step development of a duplex retina involves distinct events of cone and rod neurogenesis and differentiation. Dev Biol 416: 389-401.
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Pedurupillay CR, Amundsen SS, Barøy T, Rasmussen M, Blomhoff A, Stadheim BF, Ørstavik K, Holmgren A, Iqbal T, Frengen E, Misceo D, Strømme P. 2016. Clinical and molecular characteristics in three families with biallelic mutations in IGHMBP2. Neuromuscul Disord 26: 570-5.
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Cristofari R, Bertorelle G, Ancel A, Benazzo A, Le Maho Y, Ponganis PJ, Stenseth NC, Trathan PN, Whittington JD, Zanetti E, Zitterbart DP, Le Bohec C, Trucchi E. 2016. Full circumpolar migration ensures evolutionary unity in the Emperor penguin. Nat Commun 7: 11842.
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Micci F, Gorunova L, Agostini A, Johannessen LE, Brunetti M, Davidson B, Heim S, Panagopoulos I. 2016. Cytogenetic and molecular profile of endometrial stromal sarcoma. Genes Chromosomes Cancer 55: 834-46.
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Salgado-Flores A, Hagen LH, Ishaq SL, Zamanzadeh M, Wright AD, Pope PB, Sundset MA. 2016. Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions. PLoS One 11: e0155213.
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Oppegård C, Kjos M, Veening JW, Nissen-Meyer J, Kristensen T. 2016. A putative amino acid transporter determines sensitivity to the two-peptide bacteriocin plantaricin JK. Microbiologyopen 5: 700-8.
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Rämä T, Davey ML, Nordén J, Halvorsen R, Blaalid R, Mathiassen GH, Alsos IG, Kauserud H. 2016. Fungi Sailing the Arctic Ocean: Speciose Communities in North Atlantic Driftwood as Revealed by High-Throughput Amplicon Sequencing. Microb Ecol 72: 295-304.
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Solbakken MH, Tørresen OK, Nederbragt AJ, Seppola M, Gregers TF, Jakobsen KS, Jentoft S. 2016. Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions. Sci Rep 6: 25211.
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Mazzarella AB, Boessenkool S, Østbye K, Vøllestad LA, Trucchi E. 2016. Genomic signatures of the plateless phenotype in the threespine stickleback. Ecol Evol 6: 3161-73.
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Ledsaak M, Bengtsen M, Molværsmyr AK, Fuglerud BM, Matre V, Eskeland R, Gabrielsen OS. 2016. PIAS1 binds p300 and behaves as a coactivator or corepressor of the transcription factor c-Myb dependent on SUMO-status. Biochim Biophys Acta 1859: 705-18.
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Berg PR, Star B, Pampoulie C, Sodeland M, Barth JM, Knutsen H, Jakobsen KS, Jentoft S. 2016. Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod. Sci Rep 6: 23246.
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Beulig F, Urich T, Nowak M, Trumbore SE, Gleixner G, Gilfillan GD, Fjelland KE, Küsel K. 2016. Altered carbon turnover processes and microbiomes in soils under long-term extremely high CO2 exposure. Nat Microbiol 1: 15025.
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Gonzalez-Silva BM, Jonassen KR, Bakke I, Østgaard K, Vadstein O. 2016. Nitrification at different salinities: Biofilm community composition and physiological plasticity. Water Res 95: 48-58.
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Sørhus E, Incardona JP, Furmanek T, Jentoft S, Meier S, Edvardsen RB. 2016. Developmental transcriptomics in Atlantic haddock: Illuminating pattern formation and organogenesis in non-model vertebrates. Dev Biol 411: 301-13.
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Kummen M, Holm K, Anmarkrud JA, Nygård S, Vesterhus M, Høivik ML, Trøseid M, Marschall HU, Schrumpf E, Moum B, Røsjø H, Aukrust P, Karlsen TH, Hov JR. 2017. The gut microbial profile in patients with primary sclerosing cholangitis is distinct from patients with ulcerative colitis without biliary disease and healthy controls. Gut 66: 611-619.
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Samarakoon PS, Sorte HS, Stray-Pedersen A, Rødningen OK, Rognes T, Lyle R. 2016. cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. BMC Genomics 17: 51.
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Henry IA, Einbu A, Svendsen HF, Bakke I, ÿstgaard K. 2016. Inhibition factors in biofilm N removal systems treating wastes generated by amine based CO 2 capture. International Journal of Greenhouse Gas Control 45: 200-6.
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Langsrud S, Moen B, Møretrø T, Løype M, Heir E. 2016. Microbial dynamics in mixed culture biofilms of bacteria surviving sanitation of conveyor belts in salmon-processing plants. J Appl Microbiol 120: 366-78.
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2015

Hagen LH, Vivekanand V, Pope PB, Eijsink VG, Horn SJ. 2015. The effect of storage conditions on microbial community composition and biomethane potential in a biogas starter culture. Appl Microbiol Biotechnol 99: 5749-61.
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Botnen S, Kauserud H, Carlsen T, Blaalid R, Høiland K. 2015. Mycorrhizal fungal communities in coastal sand dunes and heaths investigated by pyrosequencing analyses. Mycorrhiza 25: 447-56.
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Baldo L, Riera JL, Tooming-Klunderud A, Albà MM, Salzburger W. 2015. Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes. PLoS One 10: e0127462.
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Dahle H, Økland I, Thorseth IH, Pederesen RB, Steen IH. 2015. Energy landscapes shape microbial communities in hydrothermal systems on the Arctic Mid-Ocean Ridge. ISME J 9: 1593-606.
doi: 10.1038/ismej.2014.247 PMID:25575309

Casén C, Vebø HC, Sekelja M, Hegge FT, Karlsson MK, Ciemniejewska E, Dzankovic S, Frøyland C, Nestestog R, Engstrand L, Munkholm P, Nielsen OH, Rogler G, Simrén M, Öhman L, Vatn MH, Rudi K. 2015. Deviations in human gut microbiota: a novel diagnostic test for determining dysbiosis in patients with IBS or IBD. Aliment Pharmacol Ther 42: 71-83.
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Fjaer R, Brodtkorb E, Øye AM, Sheng Y, Vigeland MD, Kvistad KA, Backe PH, Selmer KK. 2015. Generalized epilepsy in a family with basal ganglia calcifications and mutations in SLC20A2 and CHRNB2. Eur J Med Genet 58: 624-8.
doi: 10.1016/j.ejmg.2015.10.005 PMID:26475232

Roalkvam I, Drønen K, Stokke R, Daae FL, Dahle H, Steen IH. 2015. Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria. Front Microbiol 6: 987.
doi: 10.3389/fmicb.2015.00987 PMID:26441916

Umu ÖC, Frank JA, Fangel JU, Oostindjer M, da Silva CS, Bolhuis EJ, Bosch G, Willats WG, Pope PB, Diep DB. 2015. Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations. Microbiome 3: 16.
doi: 10.1186/s40168-015-0078-5 PMID:25905018

Panagopoulos I, Gorunova L, Bjerkehagen B, Lobmaier I, Heim S. 2015. LAMTOR1-PRKCD and NUMA1-SFMBT1 fusion genes identified by RNA sequencing in aneurysmal benign fibrous histiocytoma with t(3;11)(p21;q13). Cancer Genet 208: 545-51.
doi: 10.1016/j.cancergen.2015.07.007 PMID:26432191

Porcellato D, Frantzen C, Rangberg A, Umu OC, Gabrielsen C, Nes IF, Amdam GV, Diep DB. 2015. Draft Genome Sequence of Lactobacillus kunkeei AR114 Isolated from Honey Bee Gut. Genome Announc 3.
doi: 10.1128/genomeA.00144-15 PMID:25792062

Dotterud CK, Avershina E, Sekelja M, Simpson MR, Rudi K, Storrø O, Johnsen R, Øien T. 2015. Does Maternal Perinatal Probiotic Supplementation Alter the Intestinal Microbiota of Mother and Child?. J Pediatr Gastroenterol Nutr 61: 200-7.
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Nowak P, Troseid M, Avershina E, Barqasho B, Neogi U, Holm K, Hov JR, Noyan K, Vesterbacka J, Svärd J, Rudi K, Sönnerborg A. 2015. Gut microbiota diversity predicts immune status in HIV-1 infection. AIDS 29: 2409-18.
doi: 10.1097/QAD.0000000000000869 PMID:26355675

Logue JB, Stedmon CA, Kellerman AM, Nielsen NJ, Andersson AF, Laudon H, Lindström ES, Kritzberg ES. 2016. Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter. ISME J 10: 533-45.
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Olsen S, Striberny B, Hollmann J, Schwacke R, Popper Z, Krause K. 2016. Getting ready for host invasion: elevated expression and action of xyloglucan endotransglucosylases/hydrolases in developing haustoria of the holoparasitic angiosperm Cuscuta. J Exp Bot 67: 695-708.
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Santos SN, Gacesa R, Taketani RG, Long PF, Melo IS. 2015. Genome Sequence of Streptomyces caatingaensis CMAA 1322, a New Abiotic Stress-Tolerant Actinomycete Isolated from Dried Lake Bed Sediment in the Brazilian Caatinga Biome. Genome Announc 3.
doi: 10.1128/genomeA.01020-15 PMID:26358601

Santos SN, Kavamura VN, Taketani RG, Vasconcellos RL, Zucchi TD, Melo IS. 2015. Draft Genome Sequence of Bacillus sp. Strain CMAA 1185, a Cellullolytic Bacterium Isolated from Stain House Lake, Antarctic Peninsula. Genome Announc 3.
doi: 10.1128/genomeA.00436-15 PMID:26021916

Rueness EK, Trosvik P, Atickem A, Sillero-Zubiri C, Trucchi E. 2015. The African wolf is a missing link in the wolf-like canid phylogeny. .
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Read TD, Petit III RA, Joseph SJ, Alam MT, RW, Ahmad M, Bhimani R, Vuong JS, Haase CP, Webb H, Dove ADM. 2015. Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus Smith 1828. PeerJ PrePrints.
doi: 10.7287/peerj.preprints.837v1

Bråte J, Adamski M, Neumann RS, Shalchian-Tabrizi K, Adamska M. 2015. Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proc Biol Sci 282.
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Hjerde E, Karlsen C, Sørum H, Parkhill J, Willassen NP, Thomson NR. 2015. Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. BMC Genomics 16: 447.
doi: 10.1186/s12864-015-1669-z PMID:26059548

Ayllon F, Kjærner-Semb E, Furmanek T, Wennevik V, Solberg MF, Dahle G, Taranger GL, Glover KA, Almén MS, Rubin CJ, Edvardsen RB, Wargelius A. 2015. The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males. PLoS Genet 11: e1005628.
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Penglase S, Edvardsen RB, Furmanek T, Rønnestad I, Karlsen Ø, van der Meeren T, Hamre K. 2015. Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae. Redox Biol 5: 308-18.
doi: 10.1016/j.redox.2015.06.003 PMID:26099546

Dees MW, Lysøe E, Alsheikh M, Davik J, Brurberg MB. 2016. Resistance to Streptomyces turgidiscabies in potato involves an early and sustained transcriptional reprogramming at initial stages of tuber formation. Mol Plant Pathol 17: 703-13.
doi: 10.1111/mpp.12323 PMID:26416294

Olsen PA, Lund K, Krauss S. 2015. Expression profiling of wild type and β-catenin gene disrupted human BxPC-3 pancreatic adenocarcinoma cells. Genom Data 4: 150-2.
doi: 10.1016/j.gdata.2015.04.010 PMID:26484203

Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M. 2015. Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae). PLoS One 10: e0140175.
doi: 10.1371/journal.pone.0140175 PMID:26448557

Berg PR, Jentoft S, Star B, Ring KH, Knutsen H, Lien S, Jakobsen KS, André C. 2015. Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.). Genome Biol Evol 7: 1644-63.
doi: 10.1093/gbe/evv093 PMID:25994933

Holm KO, Nilsson K, Hjerde E, Willassen NP, Milton DL. 2015. Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia. Stand Genomic Sci 10: 60.
doi: 10.1186/s40793-015-0060-7 PMID:26380645

Munkley J, Oltean S, Vodák D, Wilson BT, Livermore KE, Zhou Y, Star E, Floros VI, Johannessen B, Knight B, McCullagh P, McGrath J, Crundwell M, Skotheim RI, Robson CN, Leung HY, Harries LW, Rajan P, Mills IG, Elliott DJ. 2015. The androgen receptor controls expression of the cancer-associated sTn antigen and cell adhesion through induction of ST6GalNAc1 in prostate cancer. Oncotarget 6: 34358-74.
doi: 10.18632/oncotarget.6024 PMID:26452038

Rounge TB, Lauritzen M, Langseth H, Enerly E, Lyle R, Gislefoss RE. 2015. microRNA Biomarker Discovery and High-Throughput DNA Sequencing Are Possible Using Long-term Archived Serum Samples. Cancer Epidemiol Biomarkers Prev 24: 1381-7.
doi: 10.1158/1055-9965.EPI-15-0289 PMID:26108462

García-Moyano A, Austnes AE, Lanzén A, González-Toril E, Aguilera Á, Øvreås L. 2015. Novel and Unexpected Microbial Diversity in Acid Mine Drainage in Svalbard (78° N), Revealed by Culture-Independent Approaches. Microorganisms 3: 667-94.
doi: 10.3390/microorganisms3040667 PMID:27682111

Panagopoulos I, Gorunova L, Bjerkehagen B, Heim S. 2015. Novel KAT6B-KANSL1 fusion gene identified by RNA sequencing in retroperitoneal leiomyoma with t(10;17)(q22;q21). PLoS One 10: e0117010.
doi: 10.1371/journal.pone.0117010 PMID:25621995

Ravi A, Avershina E, Foley SL, Ludvigsen J, Storrø O, Øien T, Johnsen R, McCartney AL, L'Abée-Lund TM, Rudi K. 2015. The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons. Sci Rep 5: 15317.
doi: 10.1038/srep15317 PMID:26507767

Panagopoulos I, Gorunova L, Bjerkehagen B, Lobmaier I, Heim S. 2016. Fusion of the TBL1XR1 and HMGA1 genes in splenic hemangioma with t(3;6)(q26;p21). Int J Oncol 48: 1242-50.
doi: 10.3892/ijo.2015.3310 PMID:26708416

Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M. 2015. RAD-seq data point to a northern origin of the arctic-alpine genus Cassiope (Ericaceae). Mol Phylogenet Evol 95: 152-160.
doi: 10.1016/j.ympev.2015.11.009 PMID:26691641

Gratton P, Trucchi E, Trasatti A, Riccarducci G, Marta S, Allegrucci G, Cesaroni D, Sbordoni V. 2016. Testing Classical Species Properties with Contemporary Data: How "Bad Species" in the Brassy Ringlets (Erebia tyndarus complex, Lepidoptera) Turned Good. Syst Biol 65: 292-303.
doi: 10.1093/sysbio/syv087 PMID:26568458

Moen B, Røssvoll E, Måge I, Møretrø T, Langsrud S. 2016. Microbiota formed on attached stainless steel coupons correlates with the natural biofilm of the sink surface in domestic kitchens. Can J Microbiol 62: 148-60.
doi: 10.1139/cjm-2015-0562 PMID:26758935

Olsen-Bergem H, Kristoffersen AK, Bjørnland T, Reseland JE, Aas JA. 2016. Juvenile idiopathic arthritis and rheumatoid arthritis: bacterial diversity in temporomandibular joint synovial fluid in comparison with immunological and clinical findings. Int J Oral Maxillofac Surg 45: 318-22.
doi: 10.1016/j.ijom.2015.08.986 PMID:26554824

Barson NJ, Aykanat T, Hindar K, Baranski M, Bolstad GH, Fiske P, Jacq C, Jensen AJ, Johnston SE, Karlsson S, Kent M, Moen T, Niemelä E, Nome T, Næsje TF, Orell P, Romakkaniemi A, Sægrov H, Urdal K, Erkinaro J, Lien S, Primmer CR. 2015. Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon. Nature 528: 405-8.
doi: 10.1038/nature16062 PMID:26536110

Pedurupillay CR, Barøy T, Holmgren A, Blomhoff A, Vigeland MD, Sheng Y, Frengen E, Strømme P, Misceo D. 2015. Kaufman oculocerebrofacial syndrome in sisters with novel compound heterozygous mutation in UBE3B. Am J Med Genet A 167A: 657-63.
doi: 10.1002/ajmg.a.36944 PMID:25691420

Barøy T, Koster J, Strømme P, Ebberink MS, Misceo D, Ferdinandusse S, Holmgren A, Hughes T, Merckoll E, Westvik J, Woldseth B, Walter J, Wood N, Tvedt B, Stadskleiv K, Wanders RJ, Waterham HR, Frengen E. 2015. A novel type of rhizomelic chondrodysplasia punctata, RCDP5, is caused by loss of the PEX5 long isoform. Hum Mol Genet 24: 5845-54.
doi: 10.1093/hmg/ddv305 PMID:26220973

Simachew A, Lanzén A, Gessesse A, Øvreås L. 2016. Prokaryotic Community Diversity Along an Increasing Salt Gradient in a Soda Ash Concentration Pond. Microb Ecol 71: 326-38.
doi: 10.1007/s00248-015-0675-7 PMID:26408190

Pettersen VK, Steinsland H, Wiker HG. 2015. Improving genome annotation of enterotoxigenic Escherichia coli TW10598 by a label-free quantitative MS/MS approach. Proteomics 15: 3826-34.
doi: 10.1002/pmic.201500278 PMID:26349841

Stiksrud B, Nowak P, Nwosu FC, Kvale D, Thalme A, Sonnerborg A, Ueland PM, Holm K, Birkeland SE, Dahm AE, Sandset PM, Rudi K, Hov JR, Dyrhol-Riise AM, Trøseid M. 2015. Reduced Levels of D-dimer and Changes in Gut Microbiota Composition After Probiotic Intervention in HIV-Infected Individuals on Stable ART. J Acquir Immune Defic Syndr 70: 329-37.
doi: 10.1097/QAI.0000000000000784 PMID:26258571

Pourteymour S, Lee S, Langleite TM, Eckardt K, Hjorth M, Bindesbøll C, Dalen KT, Birkeland KI, Drevon CA, Holen T, Norheim F. 2015. Perilipin 4 in human skeletal muscle: localization and effect of physical activity. Physiol Rep 3.
doi: 10.14814/phy2.12481 PMID:26265748

Liaskou E, Henriksen EK, Holm K, Kaveh F, Hamm D, Fear J, Viken MK, Hov JR, Melum E, Robins H, Olweus J, Karlsen TH, Hirschfield GM. 2016. High-throughput T-cell receptor sequencing across chronic liver diseases reveals distinct disease-associated repertoires. Hepatology 63: 1608-19.
doi: 10.1002/hep.28116 PMID:26257205

Torkildsen S, Gorunova L, Beiske K, Tjønnfjord GE, Heim S, Panagopoulos I. 2015. Novel ZEB2-BCL11B Fusion Gene Identified by RNA-Sequencing in Acute Myeloid Leukemia with t(2;14)(q22;q32). PLoS One 10: e0132736.
doi: 10.1371/journal.pone.0132736 PMID:26186352

Sun L, Pope PB, Eijsink VG, Schnürer A. 2015. Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure. Microb Biotechnol 8: 815-27.
doi: 10.1111/1751-7915.12298 PMID:26152665

Lundén K, Danielsson M, Durling MB, Ihrmark K, Gorriz MN, Stenlid J, Asiegbu FO, Elfstrand M. 2015. Transcriptional Responses Associated with Virulence and Defence in the Interaction between Heterobasidion annosum s.s. and Norway Spruce. PLoS One 10: e0131182.
doi: 10.1371/journal.pone.0131182 PMID:26151363

Stokke R, Dahle H, Roalkvam I, Wissuwa J, Daae FL, Tooming-Klunderud A, Thorseth IH, Pedersen RB, Steen IH. 2015. Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environ Microbiol 17: 4063-77.
doi: 10.1111/1462-2920.12970 PMID:26147346

Flåtten I, Fossum-Raunehaug S, Taipale R, Martinsen S, Skarstad K. 2015. The DnaA Protein Is Not the Limiting Factor for Initiation of Replication in Escherichia coli. PLoS Genet 11: e1005276.
doi: 10.1371/journal.pgen.1005276 PMID:26047361

Gabrielsen C, Drabløs F, Afset JE. 2015. Genome Sequences of 11 Shiga Toxin-Producing Escherichia coli Strains. Genome Announc 3.
doi: 10.1128/genomeA.00418-15 PMID:25977421

Snir O, Mesin L, Gidoni M, Lundin KE, Yaari G, Sollid LM. 2015. Analysis of Celiac Disease Autoreactive Gut Plasma Cells and Their Corresponding Memory Compartment in Peripheral Blood Using High-Throughput Sequencing. J Immunol 194: 5703-12.
doi: 10.4049/jimmunol.1402611 PMID:25972486

Eldholm V, Monteserin J, Rieux A, Lopez B, Sobkowiak B, Ritacco V, Balloux F. 2015. Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain. Nat Commun 6: 7119.
doi: 10.1038/ncomms8119 PMID:25960343

Epp LS, Gussarova G, Boessenkool S, Olsen J, Haile J, Schrøder-Nielsen A, Ludikova A, Hassel K, Stenøien HK, Funder S, Willerslev E, Kjær K, Brochmann C. 2015. Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes. Quaternary Science Reviews 117: 152-63.
doi: 10.1016/j.quascirev.2015.03.027

Tveit AT, Urich T, Frenzel P, Svenning MM. 2015. Metabolic and trophic interactions modulate methane production by Arctic peat microbiota in response to warming. Proc Natl Acad Sci U S A 112: E2507-16.
doi: 10.1073/pnas.1420797112 PMID:25918393

Bakke I, Coward E, Andersen T, Vadstein O. 2015. Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua). Environ Microbiol 17: 3914-24.
doi: 10.1111/1462-2920.12888 PMID:25923170

Egge ES, Johannessen TV, Andersen T, Eikrem W, Bittner L, Larsen A, Sandaa RA, Edvardsen B. 2015. Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing. Mol Ecol 24: 3026-42.
doi: 10.1111/mec.13160 PMID:25893259

Pihlstrøm L, Rengmark A, Bjørnarå KA, Dizdar N, Fardell C, Forsgren L, Holmberg B, Larsen JP, Linder J, Nissbrandt H, Tysnes OB, Dietrichs E, Toft M. 2015. Fine mapping and resequencing of the PARK16 locus in Parkinson's disease. J Hum Genet 60: 357-62.
doi: 10.1038/jhg.2015.34 PMID:25855069

La Rosa SL, Snipen LG, Murray BE, Willems RJ, Gilmore MS, Diep DB, Nes IF, Brede DA. 2015. A Genomic Virulence Reference Map of Enterococcus faecalis Reveals an Important Contribution of Phage03-Like Elements in Nosocomial Genetic Lineages to Pathogenicity in a Caenorhabditis elegans Infection Model. Infect Immun 83: 2156-67.
doi: 10.1128/IAI.02801-14 PMID:25776747

Olsen TK, Panagopoulos I, Meling TR, Micci F, Gorunova L, Thorsen J, Due-Tønnessen B, Scheie D, Lund-Iversen M, Krossnes B, Saxhaug C, Heim S, Brandal P. 2015. Fusion genes with ALK as recurrent partner in ependymoma-like gliomas: a new brain tumor entity?. Neuro Oncol 17: 1365-73.
doi: 10.1093/neuonc/nov039 PMID:25795305

Albrecht E, Norheim F, Thiede B, Holen T, Ohashi T, Schering L, Lee S, Brenmoehl J, Thomas S, Drevon CA, Erickson HP, Maak S. 2015. Irisin - a myth rather than an exercise-inducible myokine. Sci Rep 5: 8889.
doi: 10.1038/srep08889 PMID:25749243

Davey M, Blaalid R, Vik U, Carlsen T, Kauserud H, Eidesen PB. 2015. Primary succession of Bistorta vivipara (L.) Delabre (Polygonaceae) root-associated fungi mirrors plant succession in two glacial chronosequences. Environ Microbiol 17: 2777-90.
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Nguyen TT, Landfald B. 2015. Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor. Front Microbiol 6: 17.
doi: 10.3389/fmicb.2015.00017 PMID:25667586

 

2014

Severin I, Lindström ES, Ostman O. 2014. Relationships between bacterial community composition, functional trait composition and functioning are context dependent--but what is the context?. PLoS One 9: e112409.
doi: 10.1371/journal.pone.0112409 PMID:25380200

Micklem DR, Blø M, Bergström P, Hodneland E, Tiron C, Høiby T, Gjerdrum C, Hammarsten O, Lorens JB. 2014. Flow cytometry-based functional selection of RNA interference triggers for efficient epi-allelic analysis of therapeutic targets. BMC Biotechnol 14: 57.
doi: 10.1186/1472-6750-14-57 PMID:24952598

Naseribafrouei A, Hestad K, Avershina E, Sekelja M, Linløkken A, Wilson R, Rudi K. 2014. Correlation between the human fecal microbiota and depression. Neurogastroenterol Motil 26: 1155-62.
doi: 10.1111/nmo.12378 PMID:24888394

Porcellato D, Ostlie HM, Skeie SB. 2014. Draft Genome Sequence of Enterococcus hirae Strain INF E1 Isolated from Cultured Milk. Genome Announc 2.
doi: 10.1128/genomeA.00498-14 PMID:25035319

Handeland K, Tengs T, Kokotovic B, Vikøren T, Ayling RD, Bergsjø B, Sigurðardóttir OG, Bretten T. 2014. Mycoplasma ovipneumoniae--a primary cause of severe pneumonia epizootics in the Norwegian Muskox (Ovibos moschatus) population. PLoS One 9: e106116.
doi: 10.1371/journal.pone.0106116 PMID:25198695

Fjøsne TF, Stenseth EB, Myromslien F, Rudi K. 2015. Gene expression of TLR homologues identified by genome-wide screening of the earthworm Dendrobaena veneta. Innate Immun 21: 161-6.
doi: 10.1177/1753425914523056 PMID:24574024

Trier CN, Hermansen JS, Sætre GP, Bailey RI. 2014. Evidence for mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species. PLoS Genet 10: e1004075.
doi: 10.1371/journal.pgen.1004075 PMID:24415954

Jensen S, Lynch MD, Ray JL, Neufeld JD, Hovland M. 2015. Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities. Environ Microbiol 17: 3597-609.
doi: 10.1111/1462-2920.12531 PMID:24911121

Rondeau EB, Minkley DR, Leong JS, Messmer AM, Jantzen JR, von Schalburg KR, Lemon C, Bird NH, Koop BF. 2014. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. PLoS One 9: e102089.
doi: 10.1371/journal.pone.0102089 PMID:25069045

Olsen PA, Solberg NT, Lund K, Vehus T, Gelazauskaite M, Wilson SR, Krauss S. 2014. Implications of targeted genomic disruption of β-catenin in BxPC-3 pancreatic adenocarcinoma cells. PLoS One 9: e115496.
doi: 10.1371/journal.pone.0115496 PMID:25536063

Norheim F, Hjorth M, Langleite TM, Lee S, Holen T, Bindesbøll C, Stadheim HK, Gulseth HL, Birkeland KI, Kielland A, Jensen J, Dalen KT, Drevon CA. 2014. Regulation of angiopoietin-like protein 4 production during and after exercise. Physiol Rep 2.
doi: 10.14814/phy2.12109 PMID:25138789

Siddiqui H, Lagesen K, Nederbragt AJ, Eri LM, Jeansson SL, Jakobsen KS. 2014. Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report. Open Microbiol J 8: 148-53.
doi: 10.2174/1874285801408010148 PMID:25685246

Bjerga GE, Hjerde E, De Santi C, Williamson AK, Smalås AO, Willassen NP, Altermark B. 2014. High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway. Stand Genomic Sci 9: 676-86.
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Zakrzewski AC, Weigert A, Helm C, Adamski M, Adamska M, Bleidorn C, Raible F, Hausen H. 2014. Early divergence, broad distribution, and high diversity of animal chitin synthases. Genome Biol Evol 6: 316-25.
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Kjos M, Oppegård C, Diep DB, Nes IF, Veening JW, Nissen-Meyer J, Kristensen T. 2014. Sensitivity to the two-peptide bacteriocin lactococcin G is dependent on UppP, an enzyme involved in cell-wall synthesis. Mol Microbiol 92: 1177-87.
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Hahn C, Fromm B, Bachmann L. 2014. Comparative genomics of flatworms (platyhelminthes) reveals shared genomic features of ecto- and endoparastic neodermata. Genome Biol Evol 6: 1105-17.
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Pihlstrøm L, Rengmark A, Bjørnarå KA, Toft M. 2014. Effective variant detection by targeted deep sequencing of DNA pools: an example from Parkinson's disease. Ann Hum Genet 78: 243-52.
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Star B, Nederbragt AJ, Hansen MH, Skage M, Gilfillan GD, Bradbury IR, Pampoulie C, Stenseth NC, Jakobsen KS, Jentoft S. 2014. Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA. PLoS One 9: e89676.
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Panagopoulos I, Brandal P, Gorunova L, Bjerkehagen B, Heim S. 2014. Novel CSF1-S100A10 fusion gene and CSF1 transcript identified by RNA sequencing in tenosynovial giant cell tumors. Int J Oncol 44: 1425-32.
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Micci F, Gorunova L, Gatius S, Matias-Guiu X, Davidson B, Heim S, Panagopoulos I. 2014. MEAF6/PHF1 is a recurrent gene fusion in endometrial stromal sarcoma. Cancer Lett 347: 75-8.
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Micci F, Panagopoulos I, Thorsen J, Davidson B, Tropé CG, Heim S. 2014. Low frequency of ESRRA-C11orf20 fusion gene in ovarian carcinomas. PLoS Biol 12: e1001784.
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Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E, Brysting AK, Elven R, Sønstebø JH, Murton J, Sher A, Rasmussen M, Rønn R, Mourier T, Cooper A, Austin J, Möller P, Froese D, Zazula G, Pompanon F, Rioux D, Niderkorn V, Tikhonov A, Savvinov G, Roberts RG, MacPhee RD, Gilbert MT, Kjær KH, Orlando L, Brochmann C, Taberlet P. 2014. Fifty thousand years of Arctic vegetation and megafaunal diet. Nature 506: 47-51.
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Haverkamp TH, Hammer Ø, Jakobsen KS. 2014. Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure. PLoS One 9: e85990.
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Blaalid R, Davey ML, Kauserud H, Carlsen T, Halvorsen R, Høiland K, Eidesen PB. 2014. Arctic root-associated fungal community composition reflects environmental filtering. Mol Ecol 23: 649-59.
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Botnen S, Vik U, Carlsen T, Eidesen PB, Davey ML, Kauserud H. 2014. Low host specificity of root-associated fungi at an Arctic site. Mol Ecol 23: 975-85.
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Weedon-Fekjær MS, Sheng Y, Sugulle M, Johnsen GM, Herse F, Redman CW, Lyle R, Dechend R, Staff AC. 2014. Placental miR-1301 is dysregulated in early-onset preeclampsia and inversely correlated with maternal circulating leptin. Placenta 35: 709-17.
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Pfeifer M, Kugler KG, Sandve SR, Zhan B, Rudi H, Hvidsten TR, Mayer KF, Olsen OA. 2014. Genome interplay in the grain transcriptome of hexaploid bread wheat. Science 345: 1250091.
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Samarakoon PS, Sorte HS, Kristiansen BE, Skodje T, Sheng Y, Tjønnfjord GE, Stadheim B, Stray-Pedersen A, Rødningen OK, Lyle R. 2014. Identification of copy number variants from exome sequence data. BMC Genomics 15: 661.
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Egge ES, Eikrem W, Edvardsen B. 2015. Deep-branching Novel Lineages and High Diversity of Haptophytes in the Skagerrak (Norway) Uncovered by 454 Pyrosequencing. J Eukaryot Microbiol 62: 121-140.
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Xiao X, Sogge H, Lagesen K, Tooming-Klunderud A, Jakobsen KS, Rohrlack T. 2014. Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment. PLoS One 9: e106510.
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Stormo C, Kringen MK, Lyle R, Olstad OK, Sachse D, Berg JP, Piehler AP. 2014. RNA-sequencing analysis of HepG2 cells treated with atorvastatin. PLoS One 9: e105836.
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Håvelsrud OE, Sørum H, Gaustad P. 2014. Genome Sequences of Corynebacterium pseudotuberculosis Strains 48252 (Human, Pneumonia), CS_10 (Lab Strain), Ft_2193/67 (Goat, Pus), and CCUG 27541. Genome Announc 2.
doi: 10.1128/genomeA.00869-14 PMID:25189581

Hagen LH, Vivekanand V, Linjordet R, Pope PB, Eijsink VG, Horn SJ. 2014. Microbial community structure and dynamics during co-digestion of whey permeate and cow manure in continuous stirred tank reactor systems. Bioresour Technol 171: 350-9.
doi: 10.1016/j.biortech.2014.08.095 PMID:25222739

Leininger S, Adamski M, Bergum B, Guder C, Liu J, Laplante M, Bråte J, Hoffmann F, Fortunato S, Jordal S, Rapp HT, Adamska M. 2014. Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans. Nat Commun 5: 3905.
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Domman D, Collingro A, Lagkouvardos I, Gehre L, Weinmaier T, Rattei T, Subtil A, Horn M. 2014. Massive expansion of Ubiquitination-related gene families within the Chlamydiae. Mol Biol Evol 31: 2890-904.
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Tveit AT, Urich T, Svenning MM. 2014. Metatranscriptomic analysis of arctic peat soil microbiota. Appl Environ Microbiol 80: 5761-72.
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Squadrito ML, Baer C, Burdet F, Maderna C, Gilfillan GD, Lyle R, Ibberson M, De Palma M. 2014. Endogenous RNAs modulate microRNA sorting to exosomes and transfer to acceptor cells. Cell Rep 8: 1432-46.
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Misceo D, Holmgren A, Louch WE, Holme PA, Mizobuchi M, Morales RJ, De Paula AM, Stray-Pedersen A, Lyle R, Dalhus B, Christensen G, Stormorken H, Tjønnfjord GE, Frengen E. 2014. A dominant STIM1 mutation causes Stormorken syndrome. Hum Mutat 35: 556-64.
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Siddiqui H, Yoder-Himes DR, Mizgalska D, Nguyen KA, Potempa J, Olsen I. 2014. Genome Sequence of Porphyromonas gingivalis Strain HG66 (DSM 28984). Genome Announc 2.
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Solli L, Håvelsrud OE, Horn SJ, Rike AG. 2014. A metagenomic study of the microbial communities in four parallel biogas reactors. Biotechnol Biofuels 7: 146.
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Haugum K, Johansen J, Gabrielsen C, Brandal LT, Bergh K, Ussery DW, Drabløs F, Afset JE. 2014. Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLoS One 9: e111788.
doi: 10.1371/journal.pone.0111788 PMID:25360710

Eldholm V, Norheim G, von der Lippe B, Kinander W, Dahle UR, Caugant DA, Mannsåker T, Mengshoel AT, Dyrhol-Riise AM, Balloux F. 2014. Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient. Genome Biol 15: 490.
doi: 10.1186/s13059-014-0490-3 PMID:25418686

Quick J, Cumley N, Wearn CM, Niebel M, Constantinidou C, Thomas CM, Pallen MJ, Moiemen NS, Bamford A, Oppenheim B, Loman NJ. 2014. Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing. BMJ Open 4: e006278.
doi: 10.1136/bmjopen-2014-006278 PMID:25371418

Li Y, Lee S, Langleite T, Norheim F, Pourteymour S, Jensen J, Stadheim HK, Storås TH, Davanger S, Gulseth HL, Birkeland KI, Drevon CA, Holen T. 2014. Subsarcolemmal lipid droplet responses to a combined endurance and strength exercise intervention. Physiol Rep 2.
doi: 10.14814/phy2.12187 PMID:25413318

Krogvold L, Edwin B, Buanes T, Frisk G, Skog O, Anagandula M, Korsgren O, Undlien D, Eike MC, Richardson SJ, Leete P, Morgan NG, Oikarinen S, Oikarinen M, Laiho JE, Hyöty H, Ludvigsson J, Hanssen KF, Dahl-Jørgensen K. 2015. Detection of a low-grade enteroviral infection in the islets of langerhans of living patients newly diagnosed with type 1 diabetes. Diabetes 64: 1682-7.
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Panagopoulos I, Gorunova L, Davidson B, Heim S. 2015. Novel TNS3-MAP3K3 and ZFPM2-ELF5 fusion genes identified by RNA sequencing in multicystic mesothelioma with t(7;17)(p12;q23) and t(8;11)(q23;p13). Cancer Lett 357: 502-9.
doi: 10.1016/j.canlet.2014.12.002 PMID:25484136

Fortunato SA, Adamski M, Ramos OM, Leininger S, Liu J, Ferrier DE, Adamska M. 2014. Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Nature 514: 620-3.
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Dees MW, Lysøe E, Nordskog B, Brurberg MB. 2015. Bacterial Communities Associated with Surfaces of Leafy Greens: Shift in Composition and Decrease in Richness over Time. Appl Environ Microbiol 81: 1530-9.
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Mundra S, Halvorsen R, Kauserud H, Müller E, Vik U, Eidesen PB. 2015. Arctic fungal communities associated with roots of Bistorta vivipara do not respond to the same fine-scale edaphic gradients as the aboveground vegetation. New Phytol 205: 1587-97.
doi: 10.1111/nph.13216 PMID:25483568

Trucchi E, Gratton P, Whittington JD, Cristofari R, Le Maho Y, Stenseth NC, Le Bohec C. 2014. King penguin demography since the last glaciation inferred from genome-wide data. Proc Biol Sci 281.
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de Been M, Lanza VF, de Toro M, Scharringa J, Dohmen W, Du Y, Hu J, Lei Y, Li N, Tooming-Klunderud A, Heederik DJ, Fluit AC, Bonten MJ, Willems RJ, de la Cruz F, van Schaik W. 2014. Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages. PLoS Genet 10: e1004776.
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Malde K. 2014. Estimating the information value of polymorphic sites using pooled sequences. BMC Genomics 15: S20.
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Cortesi F, Musilová Z, Stieb SM, Hart NS, Siebeck UE, Malmstrøm M, Tørresen OK, Jentoft S, Cheney KL, Marshall NJ, Carleton KL, Salzburger W. 2015. Ancestral duplications and highly dynamic opsin gene evolution in percomorph fishes. Proc Natl Acad Sci U S A 112: 1493-8.
doi: 10.1073/pnas.1417803112 PMID:25548152

 

2013

Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S, Nowka B, Richter A, Spieck E, Lebedeva E, Loy A, Wagner M, Daims H. 2014. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environ Microbiol 16: 3055-71.
doi: 10.1111/1462-2920.12300 PMID:24118804

Zhao S, Shalchian-Tabrizi K, Klaveness D. 2013. Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Mol Phylogenet Evol 69: 462-8.
doi: 10.1016/j.ympev.2013.08.005 PMID:23973893

Petri A, Pfeil BE, Oxelman B. 2013. Introgressive hybridization between anciently diverged lineages of Silene (Caryophyllaceae). PLoS One 8: e67729.
doi: 10.1371/journal.pone.0067729 PMID:23861793

Berry D, Stecher B, Schintlmeister A, Reichert J, Brugiroux S, Wild B, Wanek W, Richter A, Rauch I, Decker T, Loy A, Wagner M. 2013. Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing. Proc Natl Acad Sci U S A 110: 4720-5.
doi: 10.1073/pnas.1219247110 PMID:23487774

Avershina E, Storrø O, Øien T, Johnsen R, Pope P, Rudi K. 2014. Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children. FEMS Microbiol Ecol 87: 280-90.
doi: 10.1111/1574-6941.12223 PMID:24112053

Boessenkool S, McGlynn G, Epp LS, Taylor D, Pimentel M, Gizaw A, Nemomissa S, Brochmann C, Popp M. 2014. Use of ancient sedimentary DNA as a novel conservation tool for high-altitude tropical biodiversity. Conserv Biol 28: 446-55.
doi: 10.1111/cobi.12195 PMID:24372820

Hjerde E, Pierechod MM, Williamson AK, Bjerga GE, Willassen NP, Smalås AO, Altermark B. 2013. Draft Genome Sequence of the Actinomycete Rhodococcus sp. Strain AW25M09, Isolated from the Hadsel Fjord, Northern Norway. Genome Announc 1: e0005513.
doi: 10.1128/genomeA.00055-13 PMID:23516194

Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ. 2013. The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. J Exp Zool B Mol Dev Evol 320: 84-93.
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de Muinck EJ, Stenseth NC, Sachse D, Vander Roost J, Rønningen KS, Rudi K, Trosvik P. 2013. Context-dependent competition in a model gut bacterial community. PLoS One 8: e67210.
doi: 10.1371/journal.pone.0067210 PMID:23922635

Panagopoulos I, Gorunova L, Zeller B, Tierens A, Heim S. 2013. Cryptic FUS-ERG fusion identified by RNA-sequencing in childhood acute myeloid leukemia. Oncol Rep 30: 2587-92.
doi: 10.3892/or.2013.2751 PMID:24068373

de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, Rudi K, Stenseth NC, Trosvik P. 2013. Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche. BMC Genomics 14: 81.
doi: 10.1186/1471-2164-14-81 PMID:23384204

Lekva T, Berg JP, Lyle R, Heck A, Ringstad G, Olstad OK, Michelsen AE, Casar-Borota O, Bollerslev J, Ueland T. 2013. Epithelial splicing regulator protein 1 and alternative splicing in somatotroph adenomas. Endocrinology 154: 3331-43.
doi: 10.1210/en.2013-1051 PMID:23825128

Avershina E, Frisli T, Rudi K. 2013. De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data. Microbes Environ 28: 211-6.
doi: 10.1264/jsme2.me12157 PMID:23603801

Egge E, Bittner L, Andersen T, Audic S, de Vargas C, Edvardsen B. 2013. 454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes. PLoS One 8: e74371.
doi: 10.1371/journal.pone.0074371 PMID:24069303

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2013. Metagenomics in CO2 Monitoring. Energy Procedia 37: 4215-33.
doi: 10.1016/j.egypro.2013.06.324

Lanzén A, Simachew A, Gessesse A, Chmolowska D, Jonassen I, Øvreås L. 2013. Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes. PLoS One 8: e72577.
doi: 10.1371/journal.pone.0072577 PMID:24023625

Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ. 2013. Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection. PLoS One 8: e57543.
doi: 10.1371/journal.pone.0057543 PMID:23472090

Malmstrøm M, Jentoft S, Gregers TF, Jakobsen KS. 2013. Unraveling the evolution of the Atlantic cod's (Gadus morhua L.) alternative immune strategy. PLoS One 8: e74004.
doi: 10.1371/journal.pone.0074004 PMID:24019946

Markussen T, Sindre H, Jonassen CM, Tengs T, Kristoffersen AB, Ramsell J, Numanovic S, Hjortaas MJ, Christiansen DH, Dale OB, Falk K. 2013. Ultra-deep pyrosequencing of partial surface protein genes from infectious Salmon Anaemia virus (ISAV) suggest novel mechanisms involved in transition to virulence. PLoS One 8: e81571.
doi: 10.1371/journal.pone.0081571 PMID:24303056

McLeod A, Brede DA, Rud I, Axelsson L. 2013. Genome Sequence of Lactobacillus sakei subsp. sakei LS25, a Commercial Starter Culture Strain for Fermented Sausage. Genome Announc 1.
doi: 10.1128/genomeA.00475-13 PMID:23846274

Olsvik PA, Hemre GI, Waagbø R. 2013. Exploring early micronutrient deficiencies in rainbow Trout (Oncorhynchus mykiss) by next-generation sequencing technology--from black box to functional genomics. PLoS One 8: e69461.
doi: 10.1371/journal.pone.0069461 PMID:23894486

Olsvik PA, Vikeså V, Lie KK, Hevrøy EM. 2013. Transcriptional responses to temperature and low oxygen stress in Atlantic salmon studied with next-generation sequencing technology. BMC Genomics 14: 817.
doi: 10.1186/1471-2164-14-817 PMID:24261939

Orr RJ, Stüken A, Murray SA, Jakobsen KS. 2013. Evolution and distribution of saxitoxin biosynthesis in dinoflagellates. Mar Drugs 11: 2814-28.
doi: 10.3390/md11082814 PMID:23966031

Panagopoulos I, Micci F, Thorsen J, Haugom L, Buechner J, Kerndrup G, Tierens A, Zeller B, Heim S. 2013. Fusion of ZMYND8 and RELA genes in acute erythroid leukemia. PLoS One 8: e63663.
doi: 10.1371/journal.pone.0063663 PMID:23667654

Star B, Haverkamp TH, Jentoft S, Jakobsen KS. 2013. Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location. BMC Microbiol 13: 248.
doi: 10.1186/1471-2180-13-248 PMID:24206635

Stokke R, Hocking WP, Steinsbu BO, Steen IH. 2013. Complete Genome Sequence of the Thermophilic and Facultatively Chemolithoautotrophic Sulfate Reducer Archaeoglobus sulfaticallidus Strain PM70-1T. Genome Announc 1.
doi: 10.1128/genomeA.00406-13 PMID:23833130

Vik U, Logares R, Blaalid R, Halvorsen R, Carlsen T, Bakke I, Kolstø AB, Økstad OA, Kauserud H. 2013. Different bacterial communities in ectomycorrhizae and surrounding soil. Sci Rep 3: 3471.
doi: 10.1038/srep03471 PMID:24326907

Orr RJ, Stüken A, Murray SA, Jakobsen KS. 2013. Evolutionary acquisition and loss of saxitoxin biosynthesis in dinoflagellates: the second "core" gene, sxtG. Appl Environ Microbiol 79: 2128-36.
doi: 10.1128/AEM.03279-12 PMID:23335767

Panagopoulos I, Thorsen J, Gorunova L, Micci F, Haugom L, Davidson B, Heim S. 2013. RNA sequencing identifies fusion of the EWSR1 and YY1 genes in mesothelioma with t(14;22)(q32;q12). Genes Chromosomes Cancer 52: 733-40.
doi: 10.1002/gcc.22068 PMID:23630070

Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L. 2013. Substantial loss of conserved and gain of novel MicroRNA families in flatworms. Mol Biol Evol 30: 2619-28.
doi: 10.1093/molbev/mst155 PMID:24025793

Uzelac G, Kojic M, Lozo J, Aleksandrzak-Piekarczyk T, Gabrielsen C, Kristensen T, Nes IF, Diep DB, Topisirovic L. 2013. A Zn-dependent metallopeptidase is responsible for sensitivity to LsbB, a class II leaderless bacteriocin of Lactococcus lactis subsp. lactis BGMN1-5. J Bacteriol 195: 5614-21.
doi: 10.1128/JB.00859-13 PMID:24123824

Müller AL, de Rezende JR, Hubert CR, Kjeldsen KU, Lagkouvardos I, Berry D, Jørgensen BB, Loy A. 2014. Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents. ISME J 8: 1153-65.
doi: 10.1038/ismej.2013.225 PMID:24351936

Brembu T, Winge P, Tooming-Klunderud A, Nederbragt AJ, Jakobsen KS, Bones AM. 2014. The chloroplast genome of the diatom Seminavis robusta: new features introduced through multiple mechanisms of horizontal gene transfer. Mar Genomics 16: 17-27.
doi: 10.1016/j.margen.2013.12.002 PMID:24365712

Liu B, Frostegård A, Shapleigh JP. 2013. Draft genome sequences of five strains in the genus thauera. Genome Announc 1.
doi: 10.1128/genomeA.00052-12 PMID:23405361

Panagopoulos I, Thorsen J, Gorunova L, Haugom L, Bjerkehagen B, Davidson B, Heim S, Micci F. 2013. Fusion of the ZC3H7B and BCOR genes in endometrial stromal sarcomas carrying an X;22-translocation. Genes Chromosomes Cancer 52: 610-8.
doi: 10.1002/gcc.22057 PMID:23580382

Yamamoto ML, Maier I, Dang AT, Berry D, Liu J, Ruegger PM, Yang JI, Soto PA, Presley LL, Reliene R, Westbrook AM, Wei B, Loy A, Chang C, Braun J, Borneman J, Schiestl RH. 2013. Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity. Cancer Res 73: 4222-32.
doi: 10.1158/0008-5472.CAN-13-0022 PMID:23860718

Eme L, Reigstad LJ, Spang A, Lanzén A, Weinmaier T, Rattei T, Schleper C, Brochier-Armanet C. 2013. Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota. Res Microbiol 164: 425-38.
doi: 10.1016/j.resmic.2013.02.006 PMID:23470515

Lindner DL, Carlsen T, Henrik Nilsson R, Davey M, Schumacher T, Kauserud H. 2013. Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi. Ecol Evol 3: 1751-64.
doi: 10.1002/ece3.586 PMID:23789083

Olsvik PA, Berg V, Lyche JL. 2013. Transcriptional profiling in burbot (Lota lota) from Lake Mjøsa--a Norwegian Lake contaminated by several organic pollutants. Ecotoxicol Environ Saf 92: 94-103.
doi: 10.1016/j.ecoenv.2013.02.019 PMID:23582132

Blaalid R, Kumar S, Nilsson RH, Abarenkov K, Kirk PM, Kauserud H. 2013. ITS1 versus ITS2 as DNA metabarcodes for fungi. Mol Ecol Resour 13: 218-24.
doi: 10.1111/1755-0998.12065 PMID:23350562

Peña-Diaz J, Hegre SA, Anderssen E, Aas PA, Mjelle R, Gilfillan GD, Lyle R, Drabløs F, Krokan HE, Sætrom P. 2013. Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Nucleic Acids Res 41: 2846-56.
doi: 10.1093/nar/gks1336 PMID:23325852

Hagen IJ, Billing AM, Rønning B, Pedersen SA, Pärn H, Slate J, Jensen H. 2013. The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus). Mol Ecol Resour 13: 429-39.
doi: 10.1111/1755-0998.12088 PMID:23480404

Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS. 2013. From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains. Appl Environ Microbiol 79: 6803-12.
doi: 10.1128/AEM.01455-13 PMID:23995927

Yao F, Vik U, Brysting AK, Carlsen T, Halvorsen R, Kauserud H. 2013. Substantial compositional turnover of fungal communities in an alpine ridge-to-snowbed gradient. Mol Ecol 22: 5040-52.
doi: 10.1111/mec.12437 PMID:23962113

Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ. 2013. Profiling microRNA expression in bovine alveolar macrophages using RNA-seq. Vet Immunol Immunopathol 155: 238-44.
doi: 10.1016/j.vetimm.2013.08.004 PMID:24021155

Liang Z, Demko V, Wilson RC, Johnson KA, Ahmad R, Perroud PF, Quatrano R, Zhao S, Shalchian-Tabrizi K, Otegui MS, Olsen OA, Johansen W. 2013. The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. Plant J 75: 742-54.
doi: 10.1111/tpj.12235 PMID:23663131

Urich T, Lanzén A, Stokke R, Pedersen RB, Bayer C, Thorseth IH, Schleper C, Steen IH, Ovreas L. 2014. Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics. Environ Microbiol 16: 2699-710.
doi: 10.1111/1462-2920.12283 PMID:24112684

Præsteng KE, Pope PB, Cann IK, Mackie RI, Mathiesen SD, Folkow LP, Eijsink VG, Sundset MA. 2013. Probiotic dosing of Ruminococcus flavefaciens affects rumen microbiome structure and function in reindeer. Microb Ecol 66: 840-9.
doi: 10.1007/s00248-013-0279-z PMID:23959114

 

2012

Logares R, Lindström ES, Langenheder S, Logue JB, Paterson H, Laybourn-Parry J, Rengefors K, Tranvik L, Bertilsson S. 2013. Biogeography of bacterial communities exposed to progressive long-term environmental change. ISME J 7: 937-48.
doi: 10.1038/ismej.2012.168 PMID:23254515

Sokol L, Cripe L, Kantarjian H, Sekeres MA, Parmar S, Greenberg P, Goldberg SL, Bhushan V, Shammo J, Hohl R, Verma A, Garcia-Manero G, Li YP, Lowe A, Zhu J, List AF. 2013. Randomized, dose-escalation study of the p38α MAPK inhibitor SCIO-469 in patients with myelodysplastic syndrome. Leukemia 27: 977-80.
doi: 10.1038/leu.2012.264 PMID:23032694

Voso MT, Fabiani E, Fianchi L, Falconi G, Criscuolo M, Santangelo R, Chiusolo P, Betti S, D'Alo' F, Hohaus S, De Stefano V, Leone G. 2013. Mutations of epigenetic regulators and of the spliceosome machinery in therapy-related myeloid neoplasms and in acute leukemias evolved from chronic myeloproliferative diseases. Leukemia 27: 982-5.
doi: 10.1038/leu.2012.267 PMID:22964944

Micci F, Thorsen J, Panagopoulos I, Nyquist KB, Zeller B, Tierens A, Heim S. 2013. High-throughput sequencing identifies an NFIA/CBFA2T3 fusion gene in acute erythroid leukemia with t(1;16)(p31;q24). Leukemia 27: 980-2.
doi: 10.1038/leu.2012.266 PMID:23032695

Moen B, Rudi K, Bore E, Langsrud S. 2012. Subminimal inhibitory concentrations of the disinfectant benzalkonium chloride select for a tolerant subpopulation of Escherichia coli with inheritable characteristics. Int J Mol Sci 13: 4101-23.
doi: 10.3390/ijms13044101 PMID:22605968

Rudi K, Moen B, Sekelja M, Frisli T, Lee MR. 2012. An eight-year investigation of bovine livestock fecal microbiota. Vet Microbiol 160: 369-77.
doi: 10.1016/j.vetmic.2012.06.003 PMID:22749759

Heggeset TM, Krog A, Balzer S, Wentzel A, Ellingsen TE, Brautaset T. 2012. Genome sequence of thermotolerant Bacillus methanolicus: features and regulation related to methylotrophy and production of L-lysine and L-glutamate from methanol. Appl Environ Microbiol 78: 5170-81.
doi: 10.1128/AEM.00703-12 PMID:22610424

Farup PG, Jacobsen M, Ligaarden SC, Rudi K. 2012. Probiotics, symptoms, and gut microbiota: what are the relations? A randomized controlled trial in subjects with irritable bowel syndrome. Gastroenterol Res Pract 2012: 214102.
doi: 10.1155/2012/214102 PMID:22899904

Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H. 2012. Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches. J Microbiol Methods 91: 106-13.
doi: 10.1016/j.mimet.2012.07.017 PMID:22849829

Blaalid R, Carlsen T, Kumar S, Halvorsen R, Ugland KI, Fontana G, Kauserud H. 2012. Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing. Mol Ecol 21: 1897-908.
doi: 10.1111/j.1365-294x.2011.05214.x PMID:22590726

Fortunato S, Adamski M, Bergum B, Guder C, Jordal S, Leininger S, Zwafink C, Rapp HT, Adamska M. 2012. Genome-wide analysis of the sox family in the calcareous sponge Sycon ciliatum: multiple genes with unique expression patterns. Evodevo 3: 14.
doi: 10.1186/2041-9139-3-14 PMID:22824100

Bellemain E, Davey ML, Kauserud H, Epp LS, Boessenkool S, Coissac E, Geml J, Edwards M, Willerslev E, Gussarova G, Taberlet P, Haile J, Brochmann C. 2013. Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environ Microbiol 15: 1176-89.
doi: 10.1111/1462-2920.12020 PMID:23171292

Bråte J, Krabberød AK, Dolven JK, Ose RF, Kristensen T, Bjørklund KR, Shalchian-Tabrizi K. 2012. Radiolaria associated with large diversity of marine alveolates. Protist 163: 767-77.
doi: 10.1016/j.protis.2012.04.004 PMID:22658831

Carlsen T, Aas AB, Lindner D, Vrålstad T, Schumacher T, Kauserud H. 2012. Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?. Fungal Ecology 5: 747-9.
doi: 10.1016/j.funeco.2012.06.003

Epp LS, Boessenkool S, Bellemain EP, Haile J, Esposito A, Riaz T, Erséus C, Gusarov VI, Edwards ME, Johnsen A, Stenøien HK, Hassel K, Kauserud H, Yoccoz NG, Bråthen KA, Willerslev E, Taberlet P, Coissac E, Brochmann C. 2012. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol Ecol 21: 1821-33.
doi: 10.1111/j.1365-294X.2012.05537.x PMID:22486821

Espelund M, Minge MA, Gabrielsen TM, Nederbragt AJ, Shalchian-Tabrizi K, Otis C, Turmel M, Lemieux C, Jakobsen KS. 2012. Genome fragmentation is not confined to the peridinin plastid in dinoflagellates. PLoS One 7: e38809.
doi: 10.1371/journal.pone.0038809 PMID:22719952

Frisli T, Haverkamp TH, Jakobsen KS, Stenseth NC, Rudi K. 2013. Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data. J Appl Microbiol 114: 141-51.
doi: 10.1111/jam.12035 PMID:23039191

Hamfjord J, Stangeland AM, Hughes T, Skrede ML, Tveit KM, Ikdahl T, Kure EH. 2012. Differential expression of miRNAs in colorectal cancer: comparison of paired tumor tissue and adjacent normal mucosa using high-throughput sequencing. PLoS One 7: e34150.
doi: 10.1371/journal.pone.0034150 PMID:22529906

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2012. Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea. BMC Microbiol 12: 203.
doi: 10.1186/1471-2180-12-203 PMID:22966776

Jaeschke A, Jørgensen SL, Bernasconi SM, Pedersen RB, Thorseth IH, Früh-Green GL. 2012. Microbial diversity of Loki's Castle black smokers at the Arctic Mid-Ocean Ridge. Geobiology 10: 548-61.
doi: 10.1111/gbi.12009 PMID:23006788

Ougland R, Lando D, Jonson I, Dahl JA, Moen MN, Nordstrand LM, Rognes T, Lee JT, Klungland A, Kouzarides T, Larsen E. 2012. ALKBH1 is a histone H2A dioxygenase involved in neural differentiation. Stem Cells 30: 2672-82.
doi: 10.1002/stem.1228 PMID:22961808

Radax R, Rattei T, Lanzen A, Bayer C, Rapp HT, Urich T, Schleper C. 2012. Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. Environ Microbiol 14: 1308-24.
doi: 10.1111/j.1462-2920.2012.02714.x PMID:22364353

Sorte H, Mørkrid L, Rødningen O, Kulseth MA, Stray-Pedersen A, Matthijs G, Race V, Houge G, Fiskerstrand T, Bjurulf B, Lyle R, Prescott T. 2012. Severe ALG8-CDG (CDG-Ih) associated with homozygosity for two novel missense mutations detected by exome sequencing of candidate genes. Eur J Med Genet 55: 196-202.
doi: 10.1016/j.ejmg.2012.01.003 PMID:22306853

Squadrito ML, Pucci F, Magri L, Moi D, Gilfillan GD, Ranghetti A, Casazza A, Mazzone M, Lyle R, Naldini L, De Palma M. 2012. miR-511-3p modulates genetic programs of tumor-associated macrophages. Cell Rep 1: 141-54.
doi: 10.1016/j.celrep.2011.12.005 PMID:22832163

Roalkvam I, Dahle H, Chen Y, Jørgensen SL, Haflidason H, Steen IH. 2012. Fine-Scale Community Structure Analysis of ANME in Nyegga Sediments with High and Low Methane Flux. Front Microbiol 3: 216.
doi: 10.3389/fmicb.2012.00216 PMID:22715336

Gabrielsen C, Brede DA, Hernández PE, Nes IF, Diep DB. 2012. Genome sequence of the bacteriocin-producing strain Lactococcus garvieae DCC43. J Bacteriol 194: 6976-7.
doi: 10.1128/JB.01864-12 PMID:23209230

Jørgensen MH, Lagesen K, Mable BK, Brysting AK. 2012. Using high-throughput sequencing to investigate the evolution of self-incompatibility genes in the Brassicaceae: strategies and challenges. Plant Ecology & Diversity 5: 473-84.
doi: 10.1080/17550874.2012.748098

Straub T, Zabel A, Gilfillan GD, Feller C, Becker PB. 2013. Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq. Genome Res 23: 473-85.
doi: 10.1101/gr.146407.112 PMID:23233545

Robertson AB, Dahl JA, Ougland R, Klungland A. 2012. Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads. Nat Protoc 7: 340-50.
doi: 10.1038/nprot.2011.443 PMID:22281869

Undlien DE. 2012. Individuell genomsekvensering. Tidsskr Nor Laegeforen 132: 264.
doi: 10.4045/tidsskr.11.1490 PMID:22314723

Zhao S, Burki F, Bråte J, Keeling PJ, Klaveness D, Shalchian-Tabrizi K. 2012. Collodictyon--an ancient lineage in the tree of eukaryotes. Mol Biol Evol 29: 1557-68.
doi: 10.1093/molbev/mss001 PMID:22319147

Bengtsson MM, Sjøtun K, Lanzén A, Ovreås L. 2012. Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea. ISME J 6: 2188-98.
doi: 10.1038/ismej.2012.67 PMID:22763650

Stokke R, Roalkvam I, Lanzen A, Haflidason H, Steen IH. 2012. Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments. Environ Microbiol 14: 1333-46.
doi: 10.1111/j.1462-2920.2012.02716.x PMID:22404914

Sogge H, Rohrlack T, Rounge TB, Sønstebø JH, Tooming-Klunderud A, Kristensen T, Jakobsen KS. 2013. Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix freshwater strains. Appl Environ Microbiol 79: 508-15.
doi: 10.1128/AEM.02417-12 PMID:23124237

Sridhar S, Sharma A, Kongshaug H, Nilsen F, Jonassen I. 2012. Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity. BMC Genomics 13: 598.
doi: 10.1186/1471-2164-13-598 PMID:23131096

Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C. 2013. Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Mol Ecol 22: 87-101.
doi: 10.1111/mec.12108 PMID:23163508

Gilfillan GD, Hughes T, Sheng Y, Hjorthaug HS, Straub T, Gervin K, Harris JR, Undlien DE, Lyle R. 2012. Limitations and possibilities of low cell number ChIP-seq. BMC Genomics 13: 645.
doi: 10.1186/1471-2164-13-645 PMID:23171294

Davey ML, Heegaard E, Halvorsen R, Kauserud H, Ohlson M. 2013. Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient. Mol Ecol 22: 368-83.
doi: 10.1111/mec.12122 PMID:23190367

Jorgensen SL, Hannisdal B, Lanzén A, Baumberger T, Flesland K, Fonseca R, Ovreås L, Steen IH, Thorseth IH, Pedersen RB, Schleper C. 2012. Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge. Proc Natl Acad Sci U S A 109: E2846-55.
doi: 10.1073/pnas.1207574109 PMID:23027979

Davey ML, Heegaard E, Halvorsen R, Ohlson M, Kauserud H. 2012. Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing. New Phytol 195: 844-56.
doi: 10.1111/j.1469-8137.2012.04215.x PMID:22758207

Leidenroth A, Sorte HS, Gilfillan G, Ehrlich M, Lyle R, Hewitt JE. 2012. Diagnosis by sequencing: correction of misdiagnosis from FSHD2 to LGMD2A by whole-exome analysis. Eur J Hum Genet 20: 999-1003.
doi: 10.1038/ejhg.2012.42 PMID:22378277

Tveit A, Schwacke R, Svenning MM, Urich T. 2013. Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms. ISME J 7: 299-311.
doi: 10.1038/ismej.2012.99 PMID:22955232

Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS. 2012. Alterations of microbiota in urine from women with interstitial cystitis. BMC Microbiol 12: 205.
doi: 10.1186/1471-2180-12-205 PMID:22974186

Nordstrand LM, Furu K, Paulsen J, Rognes T, Klungland A. 2012. Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nucleic Acids Res 40: 10950-63.
doi: 10.1093/nar/gks839 PMID:22965116

 

2011

Høvik H, Yu WH, Olsen I, Chen T. 2012. Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83. J Bacteriol 194: 100-14.
doi: 10.1128/JB.06385-11 PMID:22037400

Pester M, Rattei T, Flechl S, Gröngröft A, Richter A, Overmann J, Reinhold-Hurek B, Loy A, Wagner M. 2012. amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions. Environ Microbiol 14: 525-39.
doi: 10.1111/j.1462-2920.2011.02666.x PMID:22141924

Shalchian-Tabrizi K, Reier-Røberg K, Ree DK, Klaveness D, Bråte J. 2011. Marine-freshwater colonizations of haptophytes inferred from phylogeny of environmental 18S rDNA sequences. J Eukaryot Microbiol 58: 315-8.
doi: 10.1111/j.1550-7408.2011.00547.x PMID:21518078

Sodeland M, Grove H, Kent M, Taylor S, Svendsen M, Hayes BJ, Lien S. 2011. Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle. BMC Genet 12: 70.
doi: 10.1186/1471-2156-12-70 PMID:21835015

Klaveness D, Bråte J, Patil V, Shalchian-Tabrizi K, Kluge R, Gislerød HR, Jakobsen KS. 2011. The 18S and 28S rDNA identity and phylogeny of the common lotic chrysophyte. European Journal of Phycology 46: 282-91.
doi: 10.1080/09670262.2011.598950

Kauserud H, Kumar S, Brysting AK, Nordén J, Carlsen T. 2012. High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples. Mycorrhiza 22: 309-15.
doi: 10.1007/s00572-011-0403-1 PMID:21779811

Boessenkool S, Epp LS, Haile J, Bellemain E, Edwards M, Coissac E, Willerslev E, Brochmann C. 2012. Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA. Mol Ecol 21: 1806-15.
doi: 10.1111/j.1365-294X.2011.05306.x PMID:21988749

Lindqvist M, Isaksson B, Grub C, Jonassen TØ, Hällgren A. 2012. Detection and characterisation of SCCmec remnants in multiresistant methicillin-susceptible Staphylococcus aureus causing a clonal outbreak in a Swedish county. Eur J Clin Microbiol Infect Dis 31: 141-7.
doi: 10.1007/s10096-011-1286-y PMID:21590357

Selmer KK, Gilfillan GD, Strømme P, Lyle R, Hughes T, Hjorthaug HS, Brandal K, Nakken S, Misceo D, Egeland T, Munthe LA, Braekken SK, Undlien DE. 2012. A mild form of Mucopolysaccharidosis IIIB diagnosed with targeted next-generation sequencing of linked genomic regions. Eur J Hum Genet 20: 58-63.
doi: 10.1038/ejhg.2011.126 PMID:21712855

Danielsson M, Lundén K, Elfstrand M, Hu J, Zhao T, Arnerup J, Ihrmark K, Swedjemark G, Borg-Karlson AK, Stenlid J. 2011. Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection. BMC Plant Biol 11: 154.
doi: 10.1186/1471-2229-11-154 PMID:22067529

Gabrielsen TM, Minge MA, Espelund M, Tooming-Klunderud A, Patil V, Nederbragt AJ, Otis C, Turmel M, Shalchian-Tabrizi K, Lemieux C, Jakobsen KS. 2011. Genome evolution of a tertiary dinoflagellate plastid. PLoS One 6: e19132.
doi: 10.1371/journal.pone.0019132 PMID:21541332

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2011. A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments. BMC Microbiol 11: 221.
doi: 10.1186/1471-2180-11-221 PMID:21970369

Kumar S, Carlsen T, Mevik BH, Enger P, Blaalid R, Shalchian-Tabrizi K, Kauserud H. 2011. CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics 12: 182.
doi: 10.1186/1471-2105-12-182 PMID:21599929

Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS. 2011. Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons. BMC Microbiol 11: 244.
doi: 10.1186/1471-2180-11-244 PMID:22047020

Stüken A, Orr RJ, Kellmann R, Murray SA, Neilan BA, Jakobsen KS. 2011. Discovery of nuclear-encoded genes for the neurotoxin saxitoxin in dinoflagellates. PLoS One 6: e20096.
doi: 10.1371/journal.pone.0020096 PMID:21625593

Kotlar HK, Lewin A, Johansen J, Throne-Holst M, Haverkamp T, Markussen S, Winnberg A, Ringrose P, Aakvik T, Ryeng E, Jakobsen K, Drabløs F, Valla S. 2011. High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environ Microbiol Rep 3: 674-81.
doi: 10.1111/j.1758-2229.2011.00279.x PMID:23761356

Logue JB, Langenheder S, Andersson AF, Bertilsson S, Drakare S, Lanzén A, Lindström ES. 2012. Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships. ISME J 6: 1127-36.
doi: 10.1038/ismej.2011.184 PMID:22170419

Hildahl J, Sandvik GK, Edvardsen RB, Fagernes C, Norberg B, Haug TM, Weltzien FA. 2011. Identification and gene expression analysis of three GnRH genes in female Atlantic cod during puberty provides insight into GnRH variant gene loss in fish. Gen Comp Endocrinol 172: 458-67.
doi: 10.1016/j.ygcen.2011.04.010 PMID:21521645

Berry D, Ben Mahfoudh K, Wagner M, Loy A. 2011. Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Appl Environ Microbiol 77: 7846-9.
doi: 10.1128/AEM.05220-11 PMID:21890669

Roalkvam I, Jørgensen SL, Chen Y, Stokke R, Dahle H, Hocking WP, Lanzén A, Haflidason H, Steen IH. 2011. New insight into stratification of anaerobic methanotrophs in cold seep sediments. FEMS Microbiol Ecol 78: 233-43.
doi: 10.1111/j.1574-6941.2011.01153.x PMID:21676010

Lanzén A, Jørgensen SL, Bengtsson MM, Jonassen I, Øvreås L, Urich T. 2011. Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA. FEMS Microbiol Ecol 77: 577-89.
doi: 10.1111/j.1574-6941.2011.01138.x PMID:21627670

Hildahl J, Sandvik GK, Edvardsen RB, Norberg B, Haug TM, Weltzien FA. 2011. Four gonadotropin releasing hormone receptor genes in Atlantic cod are differentially expressed in the brain and pituitary during puberty. Gen Comp Endocrinol 173: 333-45.
doi: 10.1016/j.ygcen.2011.06.002 PMID:21704626

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS. 2011. The genome sequence of Atlantic cod reveals a unique immune system. Nature 477: 207-10.
doi: 10.1038/nature10342 PMID:21832995

 

2010

Løvoll M, Wiik-Nielsen J, Grove S, Wiik-Nielsen CR, Kristoffersen AB, Faller R, Poppe T, Jung J, Pedamallu CS, Nederbragt AJ, Meyerson M, Rimstad E, Tengs T. 2010. A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS). Virol J 7: 309.
doi: 10.1186/1743-422X-7-309 PMID:21067578

Lukacs MF, Harstad H, Bakke HG, Beetz-Sargent M, McKinnel L, Lubieniecki KP, Koop BF, Grimholt U. 2010. Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon. BMC Genomics 11: 154.
doi: 10.1186/1471-2164-11-154 PMID:20205726

Nederbragt AJ, Rounge TB, Kausrud KL, Jakobsen KS. 2010. Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads. Sequencing 2010: 1-12.
doi: 10.1155/2010/782465

Wetten OF, Nederbragt AJ, Wilson RC, Jakobsen KS, Edvardsen RB, Andersen Ø. 2010. Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters. BMC Evol Biol 10: 315.
doi: 10.1186/1471-2148-10-315 PMID:20961401

Stüken A, Jakobsen KS. 2010. The cylindrospermopsin gene cluster of Aphanizomenon sp. strain 10E6: organization and recombination. Microbiology 156: 2438-51.
doi: 10.1099/mic.0.036988-0 PMID:20430808

Bråte J, Logares R, Berney C, Ree DK, Klaveness D, Jakobsen KS, Shalchian-Tabrizi K. 2010. Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. ISME J 4: 1144-53.
doi: 10.1038/ismej.2010.39 PMID:20393574

 

2009

Jørgensen H, Degnes KF, Dikiy A, Fjaervik E, Klinkenberg G, Zotchev SB. 2010. Insights into the evolution of macrolactam biosynthesis through cloning and comparative analysis of the biosynthetic gene cluster for a novel macrocyclic lactam, ML-449. Appl Environ Microbiol 76: 283-93.
doi: 10.1128/AEM.00744-09 PMID:19854930

Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K. 2009. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol 1: 231-8.
doi: 10.1093/gbe/evp022 PMID:20333193

Rounge TB, Rohrlack T, Nederbragt AJ, Kristensen T, Jakobsen KS. 2009. A genome-wide analysis of nonribosomal peptide synthetase gene clusters and their peptides in a Planktothrix rubescens strain. BMC Genomics 10: 396.
doi: 10.1186/1471-2164-10-396 PMID:19706155

Tengs T, Zhang H, Holst-Jensen A, Bohlin J, Butenko MA, Kristoffersen AB, Sorteberg HG, Berdal KG. 2009. Characterization of unknown genetic modifications using high throughput sequencing and computational subtraction. BMC Biotechnol 9: 87.
doi: 10.1186/1472-6750-9-87 PMID:19814792

Jørgensen H, Degnes KF, Sletta H, Fjaervik E, Dikiy A, Herfindal L, Bruheim P, Klinkenberg G, Bredholt H, Nygård G, Døskeland SO, Ellingsen TE, Zotchev SB. 2009. Biosynthesis of macrolactam BE-14106 involves two distinct PKS systems and amino acid processing enzymes for generation of the aminoacyl starter unit. Chem Biol 16: 1109-21.
doi: 10.1016/j.chembiol.2009.09.014 PMID:19875084