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2017

Kovi MR, Amdahl H, Alsheikh M, Rognli OA. 2017. De novo and reference transcriptome assembly of transcripts expressed during flowering provide insight into seed setting in tetraploid red clover. Sci Rep 7: 44383.
doi: 10.1038/srep44383 PMID:28287176

Lee S, Norheim F, Gulseth HL, Langleite TM, Kolnes KJ, Tangen DS, Stadheim HK, Gilfillan GD, Holen T, Birkeland KI, Jensen J, Drevon CA. 2017. Interaction between plasma fetuin-A and free fatty acids predicts changes in insulin sensitivity in response to long-term exercise. Physiol Rep 5.
doi: 10.14814/phy2.13183 PMID:28270597

Gonzalez-Silva BM, Rønning AJ, Andreassen IK, Bakke I, Cervantes FJ, Østgaard K, Vadstein O. 2017. Changes in the microbial community of an anammox consortium during adaptation to marine conditions revealed by 454 pyrosequencing. Appl Microbiol Biotechnol.
doi: 10.1007/s00253-017-8160-5 PMID:28280868

Olsen LC, O'Reilly KC, Liabakk NB, Witter MP, Sætrom P. 2017. MicroRNAs contribute to postnatal development of laminar differences and neuronal subtypes in the rat medial entorhinal cortex. Brain Struct Funct.
doi: 10.1007/s00429-017-1389-z PMID:28260163

Sundaram A, Tengs T, Grimholt U. 2017. Issues with RNA-seq analysis in non-model organisms: A salmonid example. Dev Comp Immunol.
doi: 10.1016/j.dci.2017.02.006 PMID:28223254

Osei Sekyere J, Amoako DG. 2017. Carbonyl Cyanide m-Chlorophenylhydrazine (CCCP) Reverses Resistance to Colistin, but Not to Carbapenems and Tigecycline in Multidrug-Resistant Enterobacteriaceae. Front Microbiol 8.
doi: 10.3389/fmicb.2017.00228

Panagopoulos I, Gorunova L, Torkildsen S, Tierens A, Heim S, Micci F. 2017. FAM53B truncation caused by t(10;19)(q26;q13) chromosome translocation in acute lymphoblastic leukemia. Oncol Lett.
doi: 10.3892/ol.2017.5705

Brunetti M, Agostini A, Davidson B, Tropé CG, Heim S, Panagopoulos I, Micci F. 2017. Recurrent fusion transcripts in squamous cell carcinomas of the vulva. Oncotarget.
doi: 10.18632/oncotarget.15167 PMID:28186972

Torkildsen S, Brunetti M, Gorunova L, Spetalen S, Beiske K, Heim S, Panagopoulos I. 2017. Rearrangement of the Chromatin Organizer Special AT-rich Binding Protein 1 Gene, SATB1, Resulting from a t(3;5)(p24;q14) Chromosomal Translocation in Acute Myeloid Leukemia. Anticancer Res 37: 693-698.
doi: 10.21873/anticanres.11365 PMID:28179318

van der Helm E, Imamovic L, Hashim Ellabaan MM, van Schaik W, Koza A, Sommer MO. 2017. Rapid resistome mapping using nanopore sequencing. Nucleic Acids Res.
doi: 10.1093/nar/gkw1328 PMID:28062856

Davey ML, Skogen MJ, Heegaard E, Halvorsen R, Kauserud H, Ohlson M. 2017. Host and tissue variations overshadow the response of boreal moss-associated fungal communities to increased nitrogen load. Mol Ecol 26: 571-588.
doi: 10.1111/mec.13938 PMID:27882647

Tuveng TR, Hagen LH, Mekasha S, Frank J, Arntzen MØ, Vaaje-Kolstad G, Eijsink VG. 2017. Genomic, proteomic and biochemical analysis of the chitinolytic machinery of Serratia marcescens BJL200. Biochim Biophys Acta.
doi: 10.1016/j.bbapap.2017.01.007 PMID:28130068

Landsverk OJ, Snir O, Casado RB, Richter L, Mold JE, Réu P, Horneland R, Paulsen V, Yaqub S, Aandahl EM, Øyen OM, Thorarensen HS, Salehpour M, Possnert G, Frisén J, Sollid LM, Baekkevold ES, Jahnsen FL. 2017. Antibody-secreting plasma cells persist for decades in human intestine. J Exp Med.
doi: 10.1084/jem.20161590 PMID:28104812

Malmstrøm M, Matschiner M, Tørresen OK, Jakobsen KS, Jentoft S. 2017. Whole genome sequencing data and de novo draft assemblies for 66 teleost species. Sci Data 4: 160132.
doi: 10.1038/sdata.2016.132 PMID:28094797

Tørresen OK, Star B, Jentoft S, Reinar WB, Grove H, Miller JR, Walenz BP, Knight J, Ekholm JM, Peluso P, Edvardsen RB, Tooming-Klunderud A, Skage M, Lien S, Jakobsen KS, Nederbragt AJ. 2017. An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics 18: 95.
doi: 10.1186/s12864-016-3448-x PMID:28100185

Malde K, Seliussen BB, Quintela M, Dahle G, Besnier F, Skaug HJ, Øien N, Solvang HK, Haug T, Skern-Mauritzen R, Kanda N, Pastene LA, Jonassen I, Glover KA. 2017. Whole genome resequencing reveals diagnostic markers for investigating global migration and hybridization between minke whale species. BMC Genomics 18: 76.
doi: 10.1186/s12864-016-3416-5 PMID:28086785

Wissuwa J, Bauer SL, Steen IH, Stokke R. 2017. Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system. Stand Genomic Sci 12: 5.
doi: 10.1186/s40793-016-0219-x PMID:28078050

Aamot HU, Hofgaard IS, Lysøe E. 2017. Complete genome sequence of Luteibacter rhizovicinus strain LJ96T, isolated from the rhizosphere of barley (Hordeum vulgare L.) in Denmark. Genomics Data 11: 104-5.
doi: 10.1016/j.gdata.2016.12.012

 

2016

Steen IH, Dahle H, Stokke R, Roalkvam I, Daae FL, Rapp HT, Pedersen RB, Thorseth IH. 2016. Novel Barite Chimneys at the Loki's Castle Vent Field Shed Light on Key Factors Shaping Microbial Communities and Functions in Hydrothermal Systems. Front Microbiol 6: 1510.
doi: 10.3389/fmicb.2015.01510 PMID:26779165

Bjørnsgaard Aas A, Davey ML, Kauserud H. 2016. ITS all right mama: investigating the formation of chimeric sequences in the ITS2 region by DNA metabarcoding analyses of fungal mock communities of different complexities. Mol Ecol Resour.
doi: 10.1111/1755-0998.12622 PMID:27775220

Sundset MA, Bockwoldt M, Pope PB, Salgado-Flores A, Hagen LH. 2016. First insight into the faecal microbiota of the high Arctic muskoxen (Ovibos moschatus). 2.
doi: 10.1099/mgen.0.000066

Samaras A, Dimitroglou A, Sarropoulou E, Papaharisis L, Kottaras L, Pavlidis M. 2016. Repeatability of cortisol stress response in the European sea bass (Dicentrarchus labrax) and transcription differences between individuals with divergent responses. Sci Rep 6: 34858.
doi: 10.1038/srep34858 PMID:27703277

Gran-Stadniczeñko S, Šupraha L, Egge ED, Edvardsen B. 2016. Haptophyte Diversity and Vertical Distribution Explored by 18S and 28S Ribosomal RNA Gene Metabarcoding and Scanning Electron Microscopy. J Eukaryot Microbiol.
doi: 10.1111/jeu.12388 PMID:27973742

Cross H, Sønstebø JH, Nagy NE, Timmermann V, Solheim H, Børja I, Kauserud H, Carlsen T, Rzepka B, Wasak K, Vivian-Smith A, Hietala AM. 2017. Fungal diversity and seasonal succession in ash leaves infected by the invasive ascomycete Hymenoscyphus fraxineus. New Phytol 213: 1405-1417.
doi: 10.1111/nph.14204 PMID:27716950

Mirkovic N, Polovic N, Vukotic G, Jovcic B, Miljkovic M, Radulovic Z, Diep DB, Kojic M. 2016. Lactococcus lactis LMG2081 Produces Two Bacteriocins, a Nonlantibiotic and a Novel Lantibiotic. Appl Environ Microbiol 82: 2555-62.
doi: 10.1128/AEM.03988-15 PMID:26896142

Kaitetzidou E, Ludwig A, Gessner J, Sarropoulou E. 2016. Expression Patterns of Atlantic Sturgeon (Acipenser oxyrinchus) During Embryonic Development. G3 (Bethesda).
doi: 10.1534/g3.116.036699 PMID:27974440

De Santi C, Altermark B, Pierechod MM, Ambrosino L, de Pascale D, Willassen NP. 2016. Characterization of a cold-active and salt tolerant esterase identified by functional screening of Arctic metagenomic libraries. BMC Biochem 17: 1.
doi: 10.1186/s12858-016-0057-x PMID:26782782

Ovchinnikov KV, Chi H, Mehmeti I, Holo H, Nes IF, Diep DB. 2016. Novel Group of Leaderless Multipeptide Bacteriocins from Gram-Positive Bacteria. Appl Environ Microbiol 82: 5216-24.
doi: 10.1128/AEM.01094-16 PMID:27316965

Zha Y, Berga M, Comte J, Langenheder S. 2016. Effects of Dispersal and Initial Diversity on the Composition and Functional Performance of Bacterial Communities. PLoS One 11: e0155239.
doi: 10.1371/journal.pone.0155239 PMID:27182596

Lanzén A, Lekang K, Jonassen I, Thompson EM, Troedsson C. 2016. High-throughput metabarcoding of eukaryotic diversity for environmental monitoring of offshore oil-drilling activities. Mol Ecol 25: 4392-406.
doi: 10.1111/mec.13761 PMID:27454455

Kristoffersen C, Jensen RB, Avershina E, Austbø D, Tauson AH, Rudi K. 2016. Diet-Dependent Modular Dynamic Interactions of the Equine Cecal Microbiota. Microbes Environ 31: 378-386.
doi: 10.1264/jsme2.ME16061 PMID:27773914

Panagopoulos I, Gorunova L, Kerndrup G, Spetalen S, Tierens A, Osnes LT, Andersen K, Müller LS, Hellebostad M, Zeller B, Heim S. 2016. Rare MLL-ELL fusion transcripts in childhood acute myeloid leukemia-association with young age and myeloid sarcomas?. Exp Hematol Oncol 5: 8.
doi: 10.1186/s40164-016-0037-2 PMID:26949571

Barøy T, Pedurupillay CR, Bliksrud YT, Rasmussen M, Holmgren A, Vigeland MD, Hughes T, Brink M, Rodenburg R, Nedregaard B, Strømme P, Frengen E, Misceo D. 2016. A novel mutation in FBXL4 in a Norwegian child with encephalomyopathic mitochondrial DNA depletion syndrome 13. Eur J Med Genet 59: 342-6.
doi: 10.1016/j.ejmg.2016.05.005 PMID:27182039

Wissuwa J, Stokke R, Fedøy AE, Lian K, Smalås AO, Steen IH. 2016. Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site. Stand Genomic Sci 11: 16.
doi: 10.1186/s40793-016-0137-y PMID:26913091

Trucchi E, Facon B, Gratton P, Mori E, Stenseth NC, Jentoft S. 2016. Long live the alien: is high genetic diversity a pivotal aspect of crested porcupine (Hystrix cristata) long-lasting and successful invasion?. Mol Ecol 25: 3527-39.
doi: 10.1111/mec.13698 PMID:27171527

Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JK, Olav Vik J, Vigeland MD, Caler L, Grimholt U, Jentoft S, Våge DI, de Jong P, Moen T, Baranski M, Palti Y, Smith DR, Yorke JA, Nederbragt AJ, Tooming-Klunderud A, Jakobsen KS, Jiang X, Fan D, Hu Y, Liberles DA, Vidal R, Iturra P, Jones SJ, Jonassen I, Maass A, Omholt SW, Davidson WS. 2016. The Atlantic salmon genome provides insights into rediploidization. Nature 533: 200-5.
doi: 10.1038/nature17164 PMID:27088604

Frank JA, Pan Y, Tooming-Klunderud A, Eijsink VG, McHardy AC, Nederbragt AJ, Pope PB. 2016. Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Sci Rep 6: 25373.
doi: 10.1038/srep25373 PMID:27156482

Kjærner-Semb E, Ayllon F, Furmanek T, Wennevik V, Dahle G, Niemelä E, Ozerov M, Vähä JP, Glover KA, Rubin CJ, Wargelius A, Edvardsen RB. 2016. Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection. BMC Genomics 17: 610.
doi: 10.1186/s12864-016-2867-z PMID:27515098

Iqbal Z, Pihlstrøm L, Rengmark A, Henriksen SP, Linder J, Forsgren L, Toft M. 2016. Rare variants in dementia genes and Parkinson's disease. Eur J Hum Genet 24: 1661-1662.
doi: 10.1038/ejhg.2016.79 PMID:27329738

Rengmark A, Pihlstrøm L, Linder J, Forsgren L, Toft M. 2016. Low frequency of GCH1 and TH mutations in Parkinson's disease. Parkinsonism Relat Disord 29: 109-11.
doi: 10.1016/j.parkreldis.2016.05.010 PMID:27185167

Stray-Pedersen A, Sorte HS, Samarakoon P, Gambin T, Chinn IK, Coban Akdemir ZH, Erichsen HC, Forbes LR, Gu S, Yuan B, Jhangiani SN, Muzny DM, Rødningen OK, Sheng Y, Nicholas SK, Noroski LM, Seeborg FO, Davis CM, Canter DL, Mace EM, Vece TJ, Allen CE, Abhyankar HA, Boone PM, Beck CR, Wiszniewski W, Fevang B, Aukrust P, Tjønnfjord GE, Gedde-Dahl T, Hjorth-Hansen H, Dybedal I, Nordøy I, Jørgensen SF, Abrahamsen TG, Øverland T, Bechensteen AG, Skogen V, Osnes LT, Kulseth MA, Prescott TE, Rustad CF, Heimdal KR, Belmont JW, Rider NL, Chinen J, Cao TN, Smith EA, Caldirola MS, Bezrodnik L, Lugo Reyes SO, Espinosa Rosales FJ, Guerrero-Cursaru ND, Pedroza LA, Poli CM, Franco JL, Trujillo Vargas CM, Aldave Becerra JC, Wright N, Issekutz TB, Issekutz AC, Abbott J, Caldwell JW, Bayer DK, Chan AY, Aiuti A, Cancrini C, Holmberg E, West C, Burstedt M, Karaca E, Yesil G, Artac H, Bayram Y, Atik MM, Eldomery MK, Ehlayel MS, Jolles S, Flatø B, Bertuch AA, Hanson IC, Zhang VW, Wong LJ, Hu J, Walkiewicz M, Yang Y, Eng CM, Boerwinkle E, Gibbs RA, Shearer WT, Lyle R, Orange JS, Lupski JR. 2017. Primary immunodeficiency diseases: Genomic approaches delineate heterogeneous Mendelian disorders. J Allergy Clin Immunol 139: 232-245.
doi: 10.1016/j.jaci.2016.05.042 PMID:27577878

Kuehn HS, Boisson B, Cunningham-Rundles C, Reichenbach J, Stray-Pedersen A, Gelfand EW, Maffucci P, Pierce KR, Abbott JK, Voelkerding KV, South ST, Augustine NH, Bush JS, Dolen WK, Wray BB, Itan Y, Cobat A, Sorte HS, Ganesan S, Prader S, Martins TB, Lawrence MG, Orange JS, Calvo KR, Niemela JE, Casanova JL, Fleisher TA, Hill HR, Kumánovics A, Conley ME, Rosenzweig SD. 2016. Loss of B Cells in Patients with Heterozygous Mutations in IKAROS. N Engl J Med 374: 1032-43.
doi: 10.1056/NEJMoa1512234 PMID:26981933

Velmurugan J, Mollison E, Barth S, Marshall D, Milne L, Creevey CJ, Lynch B, Meally H, McCabe M, Milbourne D. 2016. An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly. Ann Bot 118: 71-87.
doi: 10.1093/aob/mcw081 PMID:27268483

Liljegren MM, de Muinck EJ, Trosvik P. 2016. Microsatellite Length Scoring by Single Molecule Real Time Sequencing - Effects of Sequence Structure and PCR Regime. PLoS One 11: e0159232.
doi: 10.1371/journal.pone.0159232 PMID:27414800

Eldholm V, Pettersson JH, Brynildsrud OB, Kitchen A, Rasmussen EM, Lillebaek T, Rønning JO, Crudu V, Mengshoel AT, Debech N, Alfsnes K, Bohlin J, Pepperell CS, Balloux F. 2016. Armed conflict and population displacement as drivers of the evolution and dispersal of Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 113: 13881-13886.
doi: 10.1073/pnas.1611283113 PMID:27872285

Gervin K, Andreassen BK, Hjorthaug HS, Carlsen KC, Carlsen KH, Undlien DE, Lyle R, Munthe-Kaas MC. 2016. Intra-individual changes in DNA methylation not mediated by cell-type composition are correlated with aging during childhood. Clin Epigenetics 8: 110.
doi: 10.1186/s13148-016-0277-3 PMID:27785156

Dybwad M, Aarskaug T, Fykse EM, Henie Madslien E, Blatny JM. 2016. Complete Genome Sequences of Six Legionella pneumophila Isolates from Two Collocated Outbreaks of Legionnaires' Disease in 2005 and 2008 in Sarpsborg/Fredrikstad, Norway. Genome Announc 4.
doi: 10.1128/genomeA.01367-16 PMID:27979936

Skauli N, Wallace S, Chiang SC, Barøy T, Holmgren A, Stray-Pedersen A, Bryceson YT, Strømme P, Frengen E, Misceo D. 2016. Novel PIGT Variant in Two Brothers: Expansion of the Multiple Congenital Anomalies-Hypotonia Seizures Syndrome 3 Phenotype. Genes (Basel) 7.
doi: 10.3390/genes7120108 PMID:27916860

Nistelberger HM, Smith O, Wales N, Star B, Boessenkool S. 2016. The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains. Sci Rep 6: 37347.
doi: 10.1038/srep37347 PMID:27881876

Dees MW, Brurberg MB, Lysøe E. 2016. Complete genome sequence of the biofilm-forming Microbacterium sp. strain BH-3-3-3, isolated from conventional field-grown lettuce (Lactuca sativa) in Norway. Genom Data 11: 7-8.
doi: 10.1016/j.gdata.2016.11.018 PMID:27900265

Ketto IA, Knutsen TM, Øyaas J, Heringstad B, Ådnøy T, Devold TG, Skeie SB. 2016. Effects of milk protein polymorphism and composition, casein micelle size and salt distribution on the milk coagulation properties in Norwegian Red cattle. International Dairy Journal.
doi: 10.1016/j.idairyj.2016.10.010

Lee S, Norheim F, Langleite TM, Noreng HJ, Storås TH, Afman LA, Frost G, Bell JD, Thomas EL, Kolnes KJ, Tangen DS, Stadheim HK, Gilfillan GD, Gulseth HL, Birkeland KI, Jensen J, Drevon CA, Holen T. 2016. Effect of energy restriction and physical exercise intervention on phenotypic flexibility as examined by transcriptomics analyses of mRNA from adipose tissue and whole body magnetic resonance imaging. Physiol Rep 4.
doi: 10.14814/phy2.13019 PMID:27821717

Khomich M, Kauserud H, Logares R, Rasconi S, Andersen T. 2016. Planktonic protistan communities in lakes along a large-scale environmental gradient. FEMS Microbiol Ecol.
doi: 10.1093/femsec/fiw231 PMID:27827804

Dees MW, Brurberg MB, Lysøe E. 2016. Complete genome sequence of the biofilm-forming Curtobacterium sp. strain BH-2-1-1, isolated from lettuce (Lactuca sativa) originating from a conventional field in Norway. Genomics Data 10: 135-6.
doi: 10.1016/j.gdata.2016.11.003

Boessenkool S, Hanghøj K, Nistelberger HM, Der Sarkissian C, Gondek AT, Orlando L, Barrett JH, Star B. 2016. Combining bleach and mild predigestion improves ancient DNA recovery from bones. Mol Ecol Resour.
doi: 10.1111/1755-0998.12623 PMID:27790833

Olsen HG, Knutsen TM, Lewandowska-Sabat AM, Grove H, Nome T, Svendsen M, Arnyasi M, Sodeland M, Sundsaasen KK, Dahl SR, Heringstad B, Hansen HH, Olsaker I, Kent MP, Lien S. 2016. Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production. Genet Sel Evol 48: 79.
doi: 10.1186/s12711-016-0257-2 PMID:27760518

Star B, Hansen MH, Skage M, Bradbury IR, Godiksen JA, Kjesbu OS, Jentoft S. 2016. Preferential amplification of repetitive DNA during whole genome sequencing library creation from historic samples. STAR: Science & Technology of Archaeological Research 2: 36-45.
doi: 10.1080/20548923.2016.1160594

Sundaram AY, Hughes T, Biondi S, Bolduc N, Bowman SK, Camilli A, Chew YC, Couture C, Farmer A, Jerome JP, Lazinski DW, McUsic A, Peng X, Shazand K, Xu F, Lyle R, Gilfillan GD. 2016. A comparative study of ChIP-seq sequencing library preparation methods. BMC Genomics 17: 816.
doi: 10.1186/s12864-016-3135-y PMID:27769162

Johannessen LE, Panagopoulos I, Haugvik SP, Gladhaug IP, Heim S, Micci F. 2016. Upregulation of INS-IGF2 read-through expression and identification of a novel INS-IGF2 splice variant in insulinomas. Oncol Rep.
doi: 10.3892/or.2016.5132 PMID:27667266

Ray JL, Althammer J, Skaar KS, Simonelli P, Larsen A, Stoecker D, Sazhin A, Ijaz UZ, Quince C, Nejstgaard JC, Frischer M, Pohnert G, Troedsson C. 2016. Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities. Mol Ecol.
doi: 10.1111/mec.13844 PMID:27662431

Panagopoulos I, Gorunova L, Viset T, Heim S. 2016. Gene fusions AHRR-NCOA2, NCOA2-ETV4, ETV4-AHRR, P4HA2-TBCK, and TBCK-P4HA2 resulting from the translocations t(5;8;17)(p15;q13;q21) and t(4;5)(q24;q31) in a soft tissue angiofibroma. Oncol Rep.
doi: 10.3892/or.2016.5096 PMID:27633981

Panagopoulos I, Torkildsen S, Gorunova L, Ulvmoen A, Tierens A, Zeller B, Heim S. 2016. RUNX1 truncation resulting from a cryptic and novel t(6;21)(q25;q22) chromosome translocation in acute myeloid leukemia: A case report. Oncol Rep.
doi: 10.3892/or.2016.5119 PMID:27667292

Anmarkrud JA, Lifjeld JT. 2016. Complete mitochondrial genomes of eleven extinct or possibly extinct bird species. Mol Ecol Resour.
doi: 10.1111/1755-0998.12600 PMID:27654125

Sorte HS, Osnes LT, Fevang B, Aukrust P, Erichsen HC, Backe PH, Abrahamsen TG, Kittang OB, Øverland T, Jhangiani SN, Muzny DM, Vigeland MD, Samarakoon P, Gambin T, Akdemir ZH, Gibbs RA, Rødningen OK, Lyle R, Lupski JR, Stray-Pedersen A. 2016. A potential founder variant in CARMIL2/RLTPR in three Norwegian families with warts, molluscum contagiosum, and T-cell dysfunction. Mol Genet Genomic Med 4: 604-16.
doi: 10.1002/mgg3.237 PMID:27896283

Henriksen EK, Jørgensen KK, Kaveh F, Holm K, Hamm D, Olweus J, Melum E, Chung BK, Eide TJ, Lundin KE, Boberg KM, Karlsen TH, Hirschfield GM, Liaskou E. 2017. Gut and liver T-cells of common clonal origin in primary sclerosing cholangitis-inflammatory bowel disease. J Hepatol 66: 116-122.
doi: 10.1016/j.jhep.2016.09.002 PMID:27647428

Fiorito E, Sharma Y, Gilfillan S, Wang S, Singh SK, Satheesh SV, Katika MR, Urbanucci A, Thiede B, Mills IG, Hurtado A. 2016. CTCF modulates Estrogen Receptor function through specific chromatin and nuclear matrix interactions. Nucleic Acids Res 44: 10588-10602.
doi: 10.1093/nar/gkw785 PMID:27638884

Williamson A, De Santi C, Altermark B, Karlsen C, Hjerde E. 2016. Complete genome sequence of Halomonas sp. R5-57. Stand Genomic Sci 11: 62.
doi: 10.1186/s40793-016-0192-4 PMID:27610212

Jørgensen SF, Trøseid M, Kummen M, Anmarkrud JA, Michelsen AE, Osnes LT, Holm K, Høivik ML, Rashidi A, Dahl CP, Vesterhus M, Halvorsen B, Mollnes TE, Berge RK, Moum B, Lundin KE, Fevang B, Ueland T, Karlsen TH, Aukrust P, Hov JR. 2016. Altered gut microbiota profile in common variable immunodeficiency associates with levels of lipopolysaccharide and markers of systemic immune activation. Mucosal Immunol 9: 1455-1465.
doi: 10.1038/mi.2016.18 PMID:26982597

Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp TH. 2016. Draft Genome Sequences of Two Bacillus anthracis Strains from Etosha National Park, Namibia. Genome Announc 4.
doi: 10.1128/genomeA.00861-16 PMID:27563043

Malmstrøm M, Matschiner M, Tørresen OK, Star B, Snipen LG, Hansen TF, Baalsrud HT, Nederbragt AJ, Hanel R, Salzburger W, Stenseth NC, Jakobsen KS, Jentoft S. 2016. Evolution of the immune system influences speciation rates in teleost fishes. Nat Genet 48: 1204-10.
doi: 10.1038/ng.3645 PMID:27548311

Møretrø T, Moen B, Heir E, Hansen AÅ, Langsrud S. 2016. Contamination of salmon fillets and processing plants with spoilage bacteria. Int J Food Microbiol 237: 98-108.
doi: 10.1016/j.ijfoodmicro.2016.08.016 PMID:27552347

Star B, Tørresen OK, Nederbragt AJ, Jakobsen KS, Pampoulie C, Jentoft S. 2016. Genomic characterization of the Atlantic cod sex-locus. Sci Rep 6: 31235.
doi: 10.1038/srep31235 PMID:27499266

Langleite TM, Jensen J, Norheim F, Gulseth HL, Tangen DS, Kolnes KJ, Heck A, Storås T, Grøthe G, Dahl MA, Kielland A, Holen T, Noreng HJ, Stadheim HK, Bjørnerud A, Johansen EI, Nellemann B, Birkeland KI, Drevon CA. 2016. Insulin sensitivity, body composition and adipose depots following 12 w combined endurance and strength training in dysglycemic and normoglycemic sedentary men. Arch Physiol Biochem.
doi: 10.1080/13813455.2016.1202985 PMID:27477619

Panagopoulos I, Gorunova L, Lund-Iversen M, Lobmaier I, Bjerkehagen B, Heim S. 2016. Recurrent fusion of the genes FN1 and ALK in gastrointestinal leiomyomas. Mod Pathol 29: 1415-1423.
doi: 10.1038/modpathol.2016.129 PMID:27469327

Pedurupillay CR, Landsend EC, Vigeland MD, Ansar M, Frengen E, Misceo D, Strømme P. 2016. Segregation of Incomplete Achromatopsia and Alopecia Due to PDE6H and LPAR6 Variants in a Consanguineous Family from Pakistan. Genes (Basel) 7.
doi: 10.3390/genes7080041 PMID:27472364

Gante HF, Matschiner M, Malmstrøm M, Jakobsen KS, Jentoft S, Salzburger W. 2016. Genomics of speciation and introgression in Princess cichlid fishes from Lake Tanganyika. Mol Ecol 25: 6143-6161.
doi: 10.1111/mec.13767 PMID:27452499

Sarropoulou E, Tsalafouta A, Sundaram AY, Gilfillan GD, Kotoulas G, Papandroulakis N, Pavlidis M. 2016. Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata). BMC Genomics 17: 506.
doi: 10.1186/s12864-016-2874-0 PMID:27461489

Lekva T, Lyle R, Roland MC, Friis C, Bianchi DW, Jaffe IZ, Norwitz ER, Bollerslev J, Henriksen T, Ueland T. 2016. Gene expression in term placentas is regulated more by spinal or epidural anesthesia than by late-onset preeclampsia or gestational diabetes mellitus. Sci Rep 6: 29715.
doi: 10.1038/srep29715 PMID:27405415

Olsen TK, Panagopoulos I, Gorunova L, Micci F, Andersen K, Kilen Andersen H, Meling TR, Due-Tønnessen B, Scheie D, Heim S, Brandal P. 2016. Novel fusion genes and chimeric transcripts in ependymal tumors. Genes Chromosomes Cancer 55: 944-953.
doi: 10.1002/gcc.22392 PMID:27401149

Valen R, Eilertsen M, Edvardsen RB, Furmanek T, Rønnestad I, van der Meeren T, Karlsen Ø, Nilsen TO, Helvik JV. 2016. The two-step development of a duplex retina involves distinct events of cone and rod neurogenesis and differentiation. Dev Biol 416: 389-401.
doi: 10.1016/j.ydbio.2016.06.041 PMID:27374844

Pedurupillay CR, Amundsen SS, Barøy T, Rasmussen M, Blomhoff A, Stadheim BF, Ørstavik K, Holmgren A, Iqbal T, Frengen E, Misceo D, Strømme P. 2016. Clinical and molecular characteristics in three families with biallelic mutations in IGHMBP2. Neuromuscular Disorders 26: 570-5.
doi: 10.1016/j.nmd.2016.06.457

Cristofari R, Bertorelle G, Ancel A, Benazzo A, Le Maho Y, Ponganis PJ, Stenseth NC, Trathan PN, Whittington JD, Zanetti E, Zitterbart DP, Le Bohec C, Trucchi E. 2016. Full circumpolar migration ensures evolutionary unity in the Emperor penguin. Nat Commun 7: 11842.
doi: 10.1038/ncomms11842 PMID:27296726

Micci F, Gorunova L, Agostini A, Johannessen LE, Brunetti M, Davidson B, Heim S, Panagopoulos I. 2016. Cytogenetic and molecular profile of endometrial stromal sarcoma. Genes Chromosomes Cancer 55: 834-46.
doi: 10.1002/gcc.22380 PMID:27219024

Salgado-Flores A, Hagen LH, Ishaq SL, Zamanzadeh M, Wright AD, Pope PB, Sundset MA. 2016. Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions. PLoS One 11: e0155213.
doi: 10.1371/journal.pone.0155213 PMID:27159387

Oppegård C, Kjos M, Veening JW, Nissen-Meyer J, Kristensen T. 2016. A putative amino acid transporter determines sensitivity to the two-peptide bacteriocin plantaricin JK. Microbiologyopen 5: 700-8.
doi: 10.1002/mbo3.363 PMID:27150273

Rämä T, Davey ML, Nordén J, Halvorsen R, Blaalid R, Mathiassen GH, Alsos IG, Kauserud H. 2016. Fungi Sailing the Arctic Ocean: Speciose Communities in North Atlantic Driftwood as Revealed by High-Throughput Amplicon Sequencing. Microb Ecol 72: 295-304.
doi: 10.1007/s00248-016-0778-9 PMID:27147245

Solbakken MH, Tørresen OK, Nederbragt AJ, Seppola M, Gregers TF, Jakobsen KS, Jentoft S. 2016. Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions. Sci Rep 6: 25211.
doi: 10.1038/srep25211 PMID:27126702

Mazzarella AB, Boessenkool S, Østbye K, Vøllestad LA, Trucchi E. 2016. Genomic signatures of the plateless phenotype in the threespine stickleback. Ecol Evol 6: 3161-73.
doi: 10.1002/ece3.2072 PMID:27096077

Ledsaak M, Bengtsen M, Molværsmyr AK, Fuglerud BM, Matre V, Eskeland R, Gabrielsen OS. 2016. PIAS1 binds p300 and behaves as a coactivator or corepressor of the transcription factor c-Myb dependent on SUMO-status. Biochim Biophys Acta 1859: 705-18.
doi: 10.1016/j.bbagrm.2016.03.011 PMID:27032383

Berg PR, Star B, Pampoulie C, Sodeland M, Barth JM, Knutsen H, Jakobsen KS, Jentoft S. 2016. Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod. Sci Rep 6: 23246.
doi: 10.1038/srep23246 PMID:26983361

Beulig F, Urich T, Nowak M, Trumbore SE, Gleixner G, Gilfillan GD, Fjelland KE, Küsel K. 2016. Altered carbon turnover processes and microbiomes in soils under long-term extremely high CO2 exposure. Nat Microbiol 1: 15025.
doi: 10.1038/nmicrobiol.2015.25

Gonzalez-Silva BM, Jonassen KR, Bakke I, Østgaard K, Vadstein O. 2016. Nitrification at different salinities: Biofilm community composition and physiological plasticity. Water Res 95: 48-58.
doi: 10.1016/j.watres.2016.02.050 PMID:26986496

Sørhus E, Incardona JP, Furmanek T, Jentoft S, Meier S, Edvardsen RB. 2016. Developmental transcriptomics in Atlantic haddock: Illuminating pattern formation and organogenesis in non-model vertebrates. Dev Biol 411: 301-13.
doi: 10.1016/j.ydbio.2016.02.012 PMID:26875497

Kummen M, Holm K, Anmarkrud JA, Nygård S, Vesterhus M, Høivik ML, Trøseid M, Marschall HU, Schrumpf E, Moum B, Røsjø H, Aukrust P, Karlsen TH, Hov JR. 2016. The gut microbial profile in patients with primary sclerosing cholangitis is distinct from patients with ulcerative colitis without biliary disease and healthy controls. Gut.
doi: 10.1136/gutjnl-2015-310500 PMID:26887816

Samarakoon PS, Sorte HS, Stray-Pedersen A, Rødningen OK, Rognes T, Lyle R. 2016. cnvScan: a CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. BMC Genomics 17: 51.
doi: 10.1186/s12864-016-2374-2 PMID:26764020

Henry IA, Einbu A, Svendsen HF, Bakke I, Østgaard K. 2016. Inhibition factors in biofilm N removal systems treating wastes generated by amine based CO2 capture. International Journal of Greenhouse Gas Control 45: 200-6.
doi: 10.1016/j.ijggc.2015.12.023

Langsrud S, Moen B, Møretrø T, Løype M, Heir E. 2016. Microbial dynamics in mixed culture biofilms of bacteria surviving sanitation of conveyor belts in salmon-processing plants. J Appl Microbiol 120: 366-78.
doi: 10.1111/jam.13013 PMID:26613979

 

2015

Hagen LH, Vivekanand V, Pope PB, Eijsink VG, Horn SJ. 2015. The effect of storage conditions on microbial community composition and biomethane potential in a biogas starter culture. Appl Microbiol Biotechnol 99: 5749-61.
doi: 10.1007/s00253-015-6623-0 PMID:25947246

Botnen S, Kauserud H, Carlsen T, Blaalid R, Høiland K. 2015. Mycorrhizal fungal communities in coastal sand dunes and heaths investigated by pyrosequencing analyses. Mycorrhiza 25: 447-56.
doi: 10.1007/s00572-014-0624-1 PMID:25597300

Baldo L, Riera JL, Tooming-Klunderud A, Albà MM, Salzburger W. 2015. Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes. PLoS One 10: e0127462.
doi: 10.1371/journal.pone.0127462 PMID:25978452

Dahle H, Økland I, Thorseth IH, Pederesen RB, Steen IH. 2015. Energy landscapes shape microbial communities in hydrothermal systems on the Arctic Mid-Ocean Ridge. ISME J 9: 1593-606.
doi: 10.1038/ismej.2014.247 PMID:25575309

Casén C, Vebø HC, Sekelja M, Hegge FT, Karlsson MK, Ciemniejewska E, Dzankovic S, Frøyland C, Nestestog R, Engstrand L, Munkholm P, Nielsen OH, Rogler G, Simrén M, Öhman L, Vatn MH, Rudi K. 2015. Deviations in human gut microbiota: a novel diagnostic test for determining dysbiosis in patients with IBS or IBD. Aliment Pharmacol Ther 42: 71-83.
doi: 10.1111/apt.13236 PMID:25973666

Fjaer R, Brodtkorb E, Øye AM, Sheng Y, Vigeland MD, Kvistad KA, Backe PH, Selmer KK. 2015. Generalized epilepsy in a family with basal ganglia calcifications and mutations in SLC20A2 and CHRNB2. Eur J Med Genet 58: 624-8.
doi: 10.1016/j.ejmg.2015.10.005 PMID:26475232

Roalkvam I, Drønen K, Stokke R, Daae FL, Dahle H, Steen IH. 2015. Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria. Front Microbiol 6: 987.
doi: 10.3389/fmicb.2015.00987 PMID:26441916

Umu ÖC, Frank JA, Fangel JU, Oostindjer M, da Silva CS, Bolhuis EJ, Bosch G, Willats WG, Pope PB, Diep DB. 2015. Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations. Microbiome 3: 16.
doi: 10.1186/s40168-015-0078-5 PMID:25905018

Panagopoulos I, Gorunova L, Bjerkehagen B, Lobmaier I, Heim S. 2015. LAMTOR1-PRKCD and NUMA1-SFMBT1 fusion genes identified by RNA sequencing in aneurysmal benign fibrous histiocytoma with t(3;11)(p21;q13). Cancer Genet 208: 545-51.
doi: 10.1016/j.cancergen.2015.07.007 PMID:26432191

Porcellato D, Frantzen C, Rangberg A, Umu OC, Gabrielsen C, Nes IF, Amdam GV, Diep DB. 2015. Draft Genome Sequence of Lactobacillus kunkeei AR114 Isolated from Honey Bee Gut. Genome Announc 3.
doi: 10.1128/genomeA.00144-15 PMID:25792062

Dotterud CK, Avershina E, Sekelja M, Simpson MR, Rudi K, Storrø O, Johnsen R, Øien T. 2015. Does Maternal Perinatal Probiotic Supplementation Alter the Intestinal Microbiota of Mother and Child?. J Pediatr Gastroenterol Nutr 61: 200-7.
doi: 10.1097/MPG.0000000000000781 PMID:25782657

Nowak P, Troseid M, Avershina E, Barqasho B, Neogi U, Holm K, Hov JR, Noyan K, Vesterbacka J, Svärd J, Rudi K, Sönnerborg A. 2015. Gut microbiota diversity predicts immune status in HIV-1 infection. AIDS 29: 2409-18.
doi: 10.1097/QAD.0000000000000869 PMID:26355675

Logue JB, Stedmon CA, Kellerman AM, Nielsen NJ, Andersson AF, Laudon H, Lindström ES, Kritzberg ES. 2016. Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter. ISME J 10: 533-45.
doi: 10.1038/ismej.2015.131 PMID:26296065

Olsen S, Striberny B, Hollmann J, Schwacke R, Popper Z, Krause K. 2016. Getting ready for host invasion: elevated expression and action of xyloglucan endotransglucosylases/hydrolases in developing haustoria of the holoparasitic angiosperm Cuscuta. J Exp Bot 67: 695-708.
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Santos SN, Gacesa R, Taketani RG, Long PF, Melo IS. 2015. Genome Sequence of Streptomyces caatingaensis CMAA 1322, a New Abiotic Stress-Tolerant Actinomycete Isolated from Dried Lake Bed Sediment in the Brazilian Caatinga Biome. Genome Announc 3.
doi: 10.1128/genomeA.01020-15 PMID:26358601

Santos SN, Kavamura VN, Taketani RG, Vasconcellos RL, Zucchi TD, Melo IS. 2015. Draft Genome Sequence of Bacillus sp. Strain CMAA 1185, a Cellullolytic Bacterium Isolated from Stain House Lake, Antarctic Peninsula. Genome Announc 3.
doi: 10.1128/genomeA.00436-15 PMID:26021916

Rueness EK, Trosvik P, Atickem A, Sillero-Zubiri C, Trucchi E. 2015. The African wolf is a missing link in the wolf-like canid phylogeny. .
doi: 10.1101/017996

Trucchi E, Facon B, Gratton P, Mori E, Stenseth NC, Jentoft S. 2015. Long live the alien: studying the fate of the genomic diversity along the long-term dynamics of an extremely successful invader, the crested porcupine. bioRxiv.
doi: 10.1101/016493

Frank JA, Pan Y, Tooming-Klunderud A, Eijsink VG, McHardy AC, Nederbragt AJ, Pope PB. 2015. Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. bioRxiv.
doi: 10.1101/026922

Read TD, Petit III RA, Joseph SJ, Alam MT, RW, Ahmad M, Bhimani R, Vuong JS, Haase CP, Webb H, Dove ADM. 2015. Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus Smith 1828. PeerJ PrePrints.
doi: 10.7287/peerj.preprints.837v1

Bråte J, Adamski M, Neumann RS, Shalchian-Tabrizi K, Adamska M. 2015. Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proc Biol Sci 282.
doi: 10.1098/rspb.2015.1746 PMID:26702038

Hjerde E, Karlsen C, Sørum H, Parkhill J, Willassen NP, Thomson NR. 2015. Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. BMC Genomics 16: 447.
doi: 10.1186/s12864-015-1669-z PMID:26059548

Ayllon F, Kjærner-Semb E, Furmanek T, Wennevik V, Solberg MF, Dahle G, Taranger GL, Glover KA, Almén MS, Rubin CJ, Edvardsen RB, Wargelius A. 2015. The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males. PLoS Genet 11: e1005628.
doi: 10.1371/journal.pgen.1005628 PMID:26551894

Penglase S, Edvardsen RB, Furmanek T, Rønnestad I, Karlsen Ø, van der Meeren T, Hamre K. 2015. Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae. Redox Biol 5: 308-18.
doi: 10.1016/j.redox.2015.06.003 PMID:26099546

Dees MW, Lysøe E, Alsheikh M, Davik J, Brurberg MB. 2016. Resistance to Streptomyces turgidiscabies in potato involves an early and sustained transcriptional reprogramming at initial stages of tuber formation. Mol Plant Pathol 17: 703-13.
doi: 10.1111/mpp.12323 PMID:26416294

Olsen PA, Lund K, Krauss S. 2015. Expression profiling of wild type and β-catenin gene disrupted human BxPC-3 pancreatic adenocarcinoma cells. Genom Data 4: 150-2.
doi: 10.1016/j.gdata.2015.04.010 PMID:26484203

Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M. 2015. Thousands of RAD-seq Loci Fully Resolve the Phylogeny of the Highly Disjunct Arctic-Alpine Genus Diapensia (Diapensiaceae). PLoS One 10: e0140175.
doi: 10.1371/journal.pone.0140175 PMID:26448557

Berg PR, Jentoft S, Star B, Ring KH, Knutsen H, Lien S, Jakobsen KS, André C. 2015. Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.). Genome Biol Evol 7: 1644-63.
doi: 10.1093/gbe/evv093 PMID:25994933

Holm KO, Nilsson K, Hjerde E, Willassen NP, Milton DL. 2015. Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia. Stand Genomic Sci 10: 60.
doi: 10.1186/s40793-015-0060-7 PMID:26380645

Munkley J, Oltean S, Vodák D, Wilson BT, Livermore KE, Zhou Y, Star E, Floros VI, Johannessen B, Knight B, McCullagh P, McGrath J, Crundwell M, Skotheim RI, Robson CN, Leung HY, Harries LW, Rajan P, Mills IG, Elliott DJ. 2015. The androgen receptor controls expression of the cancer-associated sTn antigen and cell adhesion through induction of ST6GalNAc1 in prostate cancer. Oncotarget 6: 34358-74.
doi: 10.18632/oncotarget.6024 PMID:26452038

Rounge TB, Lauritzen M, Langseth H, Enerly E, Lyle R, Gislefoss RE. 2015. microRNA Biomarker Discovery and High-Throughput DNA Sequencing Are Possible Using Long-term Archived Serum Samples. Cancer Epidemiol Biomarkers Prev 24: 1381-7.
doi: 10.1158/1055-9965.EPI-15-0289 PMID:26108462

García-Moyano A, Austnes A, Lanzén A, González-Toril E, Aguilera Á, Øvreås L. 2015. Novel and Unexpected Microbial Diversity in Acid Mine Drainage in Svalbard (78° N), Revealed by Culture-Independent Approaches. Microorganisms 3: 667-94.
doi: 10.3390/microorganisms3040667

Panagopoulos I, Gorunova L, Bjerkehagen B, Heim S. 2015. Novel KAT6B-KANSL1 fusion gene identified by RNA sequencing in retroperitoneal leiomyoma with t(10;17)(q22;q21). PLoS One 10: e0117010.
doi: 10.1371/journal.pone.0117010 PMID:25621995

Ravi A, Avershina E, Foley SL, Ludvigsen J, Storrø O, Øien T, Johnsen R, McCartney AL, L'Abée-Lund TM, Rudi K. 2015. The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons. Sci Rep 5: 15317.
doi: 10.1038/srep15317 PMID:26507767

Panagopoulos I, Gorunova L, Bjerkehagen B, Lobmaier I, Heim S. 2016. Fusion of the TBL1XR1 and HMGA1 genes in splenic hemangioma with t(3;6)(q26;p21). Int J Oncol 48: 1242-50.
doi: 10.3892/ijo.2015.3310 PMID:26708416

Hou Y, Nowak MD, Mirré V, Bjorå CS, Brochmann C, Popp M. 2015. RAD-seq data point to a northern origin of the arctic-alpine genus Cassiope (Ericaceae). Mol Phylogenet Evol 95: 152-160.
doi: 10.1016/j.ympev.2015.11.009 PMID:26691641

Gratton P, Trucchi E, Trasatti A, Riccarducci G, Marta S, Allegrucci G, Cesaroni D, Sbordoni V. 2016. Testing Classical Species Properties with Contemporary Data: How "Bad Species" in the Brassy Ringlets (Erebia tyndarus complex, Lepidoptera) Turned Good. Syst Biol 65: 292-303.
doi: 10.1093/sysbio/syv087 PMID:26568458

Moen B, Røssvoll E, Måge I, Møretrø T, Langsrud S. 2015. Microbiota formed on attached stainless steel coupons correlates with the natural biofilm of the sink surface in domestic kitchens. Can J Microbiol.
doi: 10.1139/cjm-2015-0562

Olsen-Bergem H, Kristoffersen AK, Bjørnland T, Reseland JE, Aas JA. 2016. Juvenile idiopathic arthritis and rheumatoid arthritis: bacterial diversity in temporomandibular joint synovial fluid in comparison with immunological and clinical findings. Int J Oral Maxillofac Surg 45: 318-22.
doi: 10.1016/j.ijom.2015.08.986 PMID:26554824

Barson NJ, Aykanat T, Hindar K, Baranski M, Bolstad GH, Fiske P, Jacq C, Jensen AJ, Johnston SE, Karlsson S, Kent M, Moen T, Niemelä E, Nome T, Næsje TF, Orell P, Romakkaniemi A, Sægrov H, Urdal K, Erkinaro J, Lien S, Primmer CR. 2015. Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon. Nature 528: 405-8.
doi: 10.1038/nature16062 PMID:26536110

Pedurupillay CR, Barøy T, Holmgren A, Blomhoff A, Vigeland MD, Sheng Y, Frengen E, Strømme P, Misceo D. 2015. Kaufman oculocerebrofacial syndrome in sisters with novel compound heterozygous mutation in UBE3B. Am J Med Genet A 167A: 657-63.
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Barøy T, Koster J, Strømme P, Ebberink MS, Misceo D, Ferdinandusse S, Holmgren A, Hughes T, Merckoll E, Westvik J, Woldseth B, Walter J, Wood N, Tvedt B, Stadskleiv K, Wanders RJ, Waterham HR, Frengen E. 2015. A novel type of rhizomelic chondrodysplasia punctata, RCDP5, is caused by loss of the PEX5 long isoform. Hum Mol Genet 24: 5845-54.
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Simachew A, Lanzén A, Gessesse A, Øvreås L. 2016. Prokaryotic Community Diversity Along an Increasing Salt Gradient in a Soda Ash Concentration Pond. Microb Ecol 71: 326-38.
doi: 10.1007/s00248-015-0675-7 PMID:26408190

Pettersen VK, Steinsland H, Wiker HG. 2015. Improving genome annotation of enterotoxigenic Escherichia coli TW10598 by a label-free quantitative MS/MS approach. Proteomics 15: 3826-34.
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Stiksrud B, Nowak P, Nwosu FC, Kvale D, Thalme A, Sonnerborg A, Ueland PM, Holm K, Birkeland SE, Dahm AE, Sandset PM, Rudi K, Hov JR, Dyrhol-Riise AM, Trøseid M. 2015. Reduced Levels of D-dimer and Changes in Gut Microbiota Composition After Probiotic Intervention in HIV-Infected Individuals on Stable ART. J Acquir Immune Defic Syndr 70: 329-37.
doi: 10.1097/QAI.0000000000000784 PMID:26258571

Pourteymour S, Lee S, Langleite TM, Eckardt K, Hjorth M, Bindesbøll C, Dalen KT, Birkeland KI, Drevon CA, Holen T, Norheim F. 2015. Perilipin 4 in human skeletal muscle: localization and effect of physical activity. Physiol Rep 3.
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Liaskou E, Henriksen EK, Holm K, Kaveh F, Hamm D, Fear J, Viken MK, Hov JR, Melum E, Robins H, Olweus J, Karlsen TH, Hirschfield GM. 2016. High-throughput T-cell receptor sequencing across chronic liver diseases reveals distinct disease-associated repertoires. Hepatology 63: 1608-19.
doi: 10.1002/hep.28116 PMID:26257205

Torkildsen S, Gorunova L, Beiske K, Tjønnfjord GE, Heim S, Panagopoulos I. 2015. Novel ZEB2-BCL11B Fusion Gene Identified by RNA-Sequencing in Acute Myeloid Leukemia with t(2;14)(q22;q32). PLoS One 10: e0132736.
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Sun L, Pope PB, Eijsink VG, Schnürer A. 2015. Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure. Microb Biotechnol 8: 815-27.
doi: 10.1111/1751-7915.12298 PMID:26152665

Lundén K, Danielsson M, Durling MB, Ihrmark K, Gorriz MN, Stenlid J, Asiegbu FO, Elfstrand M. 2015. Transcriptional Responses Associated with Virulence and Defence in the Interaction between Heterobasidion annosum s.s. and Norway Spruce. PLoS One 10: e0131182.
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Stokke R, Dahle H, Roalkvam I, Wissuwa J, Daae FL, Tooming-Klunderud A, Thorseth IH, Pedersen RB, Steen IH. 2015. Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environ Microbiol 17: 4063-77.
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Flåtten I, Fossum-Raunehaug S, Taipale R, Martinsen S, Skarstad K. 2015. The DnaA Protein Is Not the Limiting Factor for Initiation of Replication in Escherichia coli. PLoS Genet 11: e1005276.
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Gabrielsen C, Drabløs F, Afset JE. 2015. Genome Sequences of 11 Shiga Toxin-Producing Escherichia coli Strains. Genome Announc 3.
doi: 10.1128/genomeA.00418-15 PMID:25977421

Snir O, Mesin L, Gidoni M, Lundin KE, Yaari G, Sollid LM. 2015. Analysis of Celiac Disease Autoreactive Gut Plasma Cells and Their Corresponding Memory Compartment in Peripheral Blood Using High-Throughput Sequencing. J Immunol 194: 5703-12.
doi: 10.4049/jimmunol.1402611 PMID:25972486

Eldholm V, Monteserin J, Rieux A, Lopez B, Sobkowiak B, Ritacco V, Balloux F. 2015. Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain. Nat Commun 6: 7119.
doi: 10.1038/ncomms8119 PMID:25960343

Epp LS, Gussarova G, Boessenkool S, Olsen J, Haile J, Schrøder-Nielsen A, Ludikova A, Hassel K, Stenøien HK, Funder S, Willerslev E, Kjær K, Brochmann C. 2015. Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes. Quaternary Science Reviews 117: 152-63.
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Tveit AT, Urich T, Frenzel P, Svenning MM. 2015. Metabolic and trophic interactions modulate methane production by Arctic peat microbiota in response to warming. Proc Natl Acad Sci U S A 112: E2507-16.
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Bakke I, Coward E, Andersen T, Vadstein O. 2015. Selection in the host structures the microbiota associated with developing cod larvae (Gadus morhua). Environ Microbiol 17: 3914-24.
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Egge ES, Johannessen TV, Andersen T, Eikrem W, Bittner L, Larsen A, Sandaa RA, Edvardsen B. 2015. Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing. Mol Ecol 24: 3026-42.
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Pihlstrøm L, Rengmark A, Bjørnarå KA, Dizdar N, Fardell C, Forsgren L, Holmberg B, Larsen JP, Linder J, Nissbrandt H, Tysnes OB, Dietrichs E, Toft M. 2015. Fine mapping and resequencing of the PARK16 locus in Parkinson's disease. J Hum Genet 60: 357-62.
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La Rosa SL, Snipen LG, Murray BE, Willems RJ, Gilmore MS, Diep DB, Nes IF, Brede DA. 2015. A Genomic Virulence Reference Map of Enterococcus faecalis Reveals an Important Contribution of Phage03-Like Elements in Nosocomial Genetic Lineages to Pathogenicity in a Caenorhabditis elegans Infection Model. Infect Immun 83: 2156-67.
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Olsen TK, Panagopoulos I, Meling TR, Micci F, Gorunova L, Thorsen J, Due-Tønnessen B, Scheie D, Lund-Iversen M, Krossnes B, Saxhaug C, Heim S, Brandal P. 2015. Fusion genes with ALK as recurrent partner in ependymoma-like gliomas: a new brain tumor entity?. Neuro Oncol 17: 1365-73.
doi: 10.1093/neuonc/nov039 PMID:25795305

Albrecht E, Norheim F, Thiede B, Holen T, Ohashi T, Schering L, Lee S, Brenmoehl J, Thomas S, Drevon CA, Erickson HP, Maak S. 2015. Irisin - a myth rather than an exercise-inducible myokine. Sci Rep 5: 8889.
doi: 10.1038/srep08889 PMID:25749243

Davey M, Blaalid R, Vik U, Carlsen T, Kauserud H, Eidesen PB. 2015. Primary succession of Bistorta vivipara (L.) Delabre (Polygonaceae) root-associated fungi mirrors plant succession in two glacial chronosequences. Environ Microbiol 17: 2777-90.
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Nguyen TT, Landfald B. 2015. Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor. Front Microbiol 6: 17.
doi: 10.3389/fmicb.2015.00017 PMID:25667586

Siddiqui H, Lagesen K, Nederbragt AJ, Eri LM, Jeansson SL, Jakobsen KS. 2015. Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report. TOMICROJ 8: 148-53.
doi: 10.2174/1874285801408010148

 

2014

Severin I, Lindström ES, Ostman O. 2014. Relationships between bacterial community composition, functional trait composition and functioning are context dependent--but what is the context?. PLoS One 9: e112409.
doi: 10.1371/journal.pone.0112409 PMID:25380200

Micklem DR, Blø M, Bergström P, Hodneland E, Tiron C, Høiby T, Gjerdrum C, Hammarsten O, Lorens JB. 2014. Flow cytometry-based functional selection of RNA interference triggers for efficient epi-allelic analysis of therapeutic targets. BMC Biotechnol 14: 57.
doi: 10.1186/1472-6750-14-57 PMID:24952598

Naseribafrouei A, Hestad K, Avershina E, Sekelja M, Linløkken A, Wilson R, Rudi K. 2014. Correlation between the human fecal microbiota and depression. Neurogastroenterol Motil 26: 1155-62.
doi: 10.1111/nmo.12378 PMID:24888394

Porcellato D, Ostlie HM, Skeie SB. 2014. Draft Genome Sequence of Enterococcus hirae Strain INF E1 Isolated from Cultured Milk. Genome Announc 2.
doi: 10.1128/genomeA.00498-14 PMID:25035319

Handeland K, Tengs T, Kokotovic B, Vikøren T, Ayling RD, Bergsjø B, Sigurðardóttir OG, Bretten T. 2014. Mycoplasma ovipneumoniae--a primary cause of severe pneumonia epizootics in the Norwegian Muskox (Ovibos moschatus) population. PLoS One 9: e106116.
doi: 10.1371/journal.pone.0106116 PMID:25198695

Fjøsne TF, Stenseth EB, Myromslien F, Rudi K. 2015. Gene expression of TLR homologues identified by genome-wide screening of the earthworm Dendrobaena veneta. Innate Immun 21: 161-6.
doi: 10.1177/1753425914523056 PMID:24574024

Trier CN, Hermansen JS, Sætre GP, Bailey RI. 2014. Evidence for mito-nuclear and sex-linked reproductive barriers between the hybrid Italian sparrow and its parent species. PLoS Genet 10: e1004075.
doi: 10.1371/journal.pgen.1004075 PMID:24415954

Jensen S, Lynch MD, Ray JL, Neufeld JD, Hovland M. 2015. Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities. Environ Microbiol 17: 3597-609.
doi: 10.1111/1462-2920.12531 PMID:24911121

Rondeau EB, Minkley DR, Leong JS, Messmer AM, Jantzen JR, von Schalburg KR, Lemon C, Bird NH, Koop BF. 2014. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. PLoS One 9: e102089.
doi: 10.1371/journal.pone.0102089 PMID:25069045

Olsen PA, Solberg NT, Lund K, Vehus T, Gelazauskaite M, Wilson SR, Krauss S. 2014. Implications of targeted genomic disruption of β-catenin in BxPC-3 pancreatic adenocarcinoma cells. PLoS One 9: e115496.
doi: 10.1371/journal.pone.0115496 PMID:25536063

Norheim F, Hjorth M, Langleite TM, Lee S, Holen T, Bindesbøll C, Stadheim HK, Gulseth HL, Birkeland KI, Kielland A, Jensen J, Dalen KT, Drevon CA. 2014. Regulation of angiopoietin-like protein 4 production during and after exercise. Physiol Rep 2.
doi: 10.14814/phy2.12109 PMID:25138789

Bjerga GE, Hjerde E, De Santi C, Williamson AK, Smalås AO, Willassen NP, Altermark B. 2014. High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway. Stand Genomic Sci 9: 676-86.
doi: 10.4056/sigs.5038901 PMID:25197453

Zakrzewski AC, Weigert A, Helm C, Adamski M, Adamska M, Bleidorn C, Raible F, Hausen H. 2014. Early divergence, broad distribution, and high diversity of animal chitin synthases. Genome Biol Evol 6: 316-25.
doi: 10.1093/gbe/evu011 PMID:24443419

Kjos M, Oppegård C, Diep DB, Nes IF, Veening JW, Nissen-Meyer J, Kristensen T. 2014. Sensitivity to the two-peptide bacteriocin lactococcin G is dependent on UppP, an enzyme involved in cell-wall synthesis. Mol Microbiol 92: 1177-87.
doi: 10.1111/mmi.12632 PMID:24779486

Hahn C, Fromm B, Bachmann L. 2014. Comparative genomics of flatworms (platyhelminthes) reveals shared genomic features of ecto- and endoparastic neodermata. Genome Biol Evol 6: 1105-17.
doi: 10.1093/gbe/evu078 PMID:24732282

Pihlstrøm L, Rengmark A, Bjørnarå KA, Toft M. 2014. Effective variant detection by targeted deep sequencing of DNA pools: an example from Parkinson's disease. Ann Hum Genet 78: 243-52.
doi: 10.1111/ahg.12060 PMID:24660942

Star B, Nederbragt AJ, Hansen MH, Skage M, Gilfillan GD, Bradbury IR, Pampoulie C, Stenseth NC, Jakobsen KS, Jentoft S. 2014. Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA. PLoS One 9: e89676.
doi: 10.1371/journal.pone.0089676 PMID:24608104

Panagopoulos I, Brandal P, Gorunova L, Bjerkehagen B, Heim S. 2014. Novel CSF1-S100A10 fusion gene and CSF1 transcript identified by RNA sequencing in tenosynovial giant cell tumors. Int J Oncol 44: 1425-32.
doi: 10.3892/ijo.2014.2326 PMID:24604026

Micci F, Gorunova L, Gatius S, Matias-Guiu X, Davidson B, Heim S, Panagopoulos I. 2014. MEAF6/PHF1 is a recurrent gene fusion in endometrial stromal sarcoma. Cancer Lett 347: 75-8.
doi: 10.1016/j.canlet.2014.01.030 PMID:24530230

Micci F, Panagopoulos I, Thorsen J, Davidson B, Tropé CG, Heim S. 2014. Low frequency of ESRRA-C11orf20 fusion gene in ovarian carcinomas. PLoS Biol 12: e1001784.
doi: 10.1371/journal.pbio.1001784 PMID:24504521

Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E, Brysting AK, Elven R, Sønstebø JH, Murton J, Sher A, Rasmussen M, Rønn R, Mourier T, Cooper A, Austin J, Möller P, Froese D, Zazula G, Pompanon F, Rioux D, Niderkorn V, Tikhonov A, Savvinov G, Roberts RG, MacPhee RD, Gilbert MT, Kjær KH, Orlando L, Brochmann C, Taberlet P. 2014. Fifty thousand years of Arctic vegetation and megafaunal diet. Nature 506: 47-51.
doi: 10.1038/nature12921 PMID:24499916

Haverkamp TH, Hammer Ø, Jakobsen KS. 2014. Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure. PLoS One 9: e85990.
doi: 10.1371/journal.pone.0085990 PMID:24475066

Blaalid R, Davey ML, Kauserud H, Carlsen T, Halvorsen R, Høiland K, Eidesen PB. 2014. Arctic root-associated fungal community composition reflects environmental filtering. Mol Ecol 23: 649-59.
doi: 10.1111/mec.12622 PMID:24320873

Botnen S, Vik U, Carlsen T, Eidesen PB, Davey ML, Kauserud H. 2014. Low host specificity of root-associated fungi at an Arctic site. Mol Ecol 23: 975-85.
doi: 10.1111/mec.12646 PMID:24382270

Weedon-Fekjær MS, Sheng Y, Sugulle M, Johnsen GM, Herse F, Redman CW, Lyle R, Dechend R, Staff AC. 2014. Placental miR-1301 is dysregulated in early-onset preeclampsia and inversely correlated with maternal circulating leptin. Placenta 35: 709-17.
doi: 10.1016/j.placenta.2014.07.002 PMID:25064070

Pfeifer M, Kugler KG, Sandve SR, Zhan B, Rudi H, Hvidsten TR, Mayer KF, Olsen OA. 2014. Genome interplay in the grain transcriptome of hexaploid bread wheat. Science 345: 1250091.
doi: 10.1126/science.1250091 PMID:25035498

Samarakoon PS, Sorte HS, Kristiansen BE, Skodje T, Sheng Y, Tjønnfjord GE, Stadheim B, Stray-Pedersen A, Rødningen OK, Lyle R. 2014. Identification of copy number variants from exome sequence data. BMC Genomics 15: 661.
doi: 10.1186/1471-2164-15-661 PMID:25102989

Egge ES, Eikrem W, Edvardsen B. 2015. Deep-branching Novel Lineages and High Diversity of Haptophytes in the Skagerrak (Norway) Uncovered by 454 Pyrosequencing. J Eukaryot Microbiol 62: 121-140.
doi: 10.1111/jeu.12157 PMID:25099994

Xiao X, Sogge H, Lagesen K, Tooming-Klunderud A, Jakobsen KS, Rohrlack T. 2014. Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment. PLoS One 9: e106510.
doi: 10.1371/journal.pone.0106510 PMID:25171164

Stormo C, Kringen MK, Lyle R, Olstad OK, Sachse D, Berg JP, Piehler AP. 2014. RNA-sequencing analysis of HepG2 cells treated with atorvastatin. PLoS One 9: e105836.
doi: 10.1371/journal.pone.0105836 PMID:25153832

Håvelsrud OE, Sørum H, Gaustad P. 2014. Genome Sequences of Corynebacterium pseudotuberculosis Strains 48252 (Human, Pneumonia), CS_10 (Lab Strain), Ft_2193/67 (Goat, Pus), and CCUG 27541. Genome Announc 2.
doi: 10.1128/genomeA.00869-14 PMID:25189581

Hagen LH, Vivekanand V, Linjordet R, Pope PB, Eijsink VG, Horn SJ. 2014. Microbial community structure and dynamics during co-digestion of whey permeate and cow manure in continuous stirred tank reactor systems. Bioresour Technol 171: 350-9.
doi: 10.1016/j.biortech.2014.08.095 PMID:25222739

Leininger S, Adamski M, Bergum B, Guder C, Liu J, Laplante M, Bråte J, Hoffmann F, Fortunato S, Jordal S, Rapp HT, Adamska M. 2014. Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans. Nat Commun 5: 3905.
doi: 10.1038/ncomms4905 PMID:24844197

Domman D, Collingro A, Lagkouvardos I, Gehre L, Weinmaier T, Rattei T, Subtil A, Horn M. 2014. Massive expansion of Ubiquitination-related gene families within the Chlamydiae. Mol Biol Evol 31: 2890-904.
doi: 10.1093/molbev/msu227 PMID:25069652

Tveit AT, Urich T, Svenning MM. 2014. Metatranscriptomic analysis of arctic peat soil microbiota. Appl Environ Microbiol 80: 5761-72.
doi: 10.1128/AEM.01030-14 PMID:25015892

Squadrito ML, Baer C, Burdet F, Maderna C, Gilfillan GD, Lyle R, Ibberson M, De Palma M. 2014. Endogenous RNAs modulate microRNA sorting to exosomes and transfer to acceptor cells. Cell Rep 8: 1432-46.
doi: 10.1016/j.celrep.2014.07.035 PMID:25159140

Misceo D, Holmgren A, Louch WE, Holme PA, Mizobuchi M, Morales RJ, De Paula AM, Stray-Pedersen A, Lyle R, Dalhus B, Christensen G, Stormorken H, Tjønnfjord GE, Frengen E. 2014. A dominant STIM1 mutation causes Stormorken syndrome. Hum Mutat 35: 556-64.
doi: 10.1002/humu.22544 PMID:24619930

Siddiqui H, Yoder-Himes DR, Mizgalska D, Nguyen KA, Potempa J, Olsen I. 2014. Genome Sequence of Porphyromonas gingivalis Strain HG66 (DSM 28984). Genome Announc 2.
doi: 10.1128/genomeA.00947-14 PMID:25291768

Solli L, Håvelsrud OE, Horn SJ, Rike AG. 2014. A metagenomic study of the microbial communities in four parallel biogas reactors. Biotechnol Biofuels 7: 146.
doi: 10.1186/s13068-014-0146-2 PMID:25328537

Haugum K, Johansen J, Gabrielsen C, Brandal LT, Bergh K, Ussery DW, Drabløs F, Afset JE. 2014. Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway. PLoS One 9: e111788.
doi: 10.1371/journal.pone.0111788 PMID:25360710

Eldholm V, Norheim G, von der Lippe B, Kinander W, Dahle UR, Caugant DA, Mannsåker T, Mengshoel AT, Dyrhol-Riise AM, Balloux F. 2014. Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient. Genome Biol 15: 490.
doi: 10.1186/s13059-014-0490-3 PMID:25418686

Quick J, Cumley N, Wearn CM, Niebel M, Constantinidou C, Thomas CM, Pallen MJ, Moiemen NS, Bamford A, Oppenheim B, Loman NJ. 2014. Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital: an observational study using whole-genome sequencing. BMJ Open 4: e006278.
doi: 10.1136/bmjopen-2014-006278 PMID:25371418

Li Y, Lee S, Langleite T, Norheim F, Pourteymour S, Jensen J, Stadheim HK, Storås TH, Davanger S, Gulseth HL, Birkeland KI, Drevon CA, Holen T. 2014. Subsarcolemmal lipid droplet responses to a combined endurance and strength exercise intervention. Physiol Rep 2.
doi: 10.14814/phy2.12187 PMID:25413318

Krogvold L, Edwin B, Buanes T, Frisk G, Skog O, Anagandula M, Korsgren O, Undlien D, Eike MC, Richardson SJ, Leete P, Morgan NG, Oikarinen S, Oikarinen M, Laiho JE, Hyöty H, Ludvigsson J, Hanssen KF, Dahl-Jørgensen K. 2015. Detection of a low-grade enteroviral infection in the islets of langerhans of living patients newly diagnosed with type 1 diabetes. Diabetes 64: 1682-7.
doi: 10.2337/db14-1370 PMID:25422108

Panagopoulos I, Gorunova L, Davidson B, Heim S. 2015. Novel TNS3-MAP3K3 and ZFPM2-ELF5 fusion genes identified by RNA sequencing in multicystic mesothelioma with t(7;17)(p12;q23) and t(8;11)(q23;p13). Cancer Lett 357: 502-9.
doi: 10.1016/j.canlet.2014.12.002 PMID:25484136

Fortunato SA, Adamski M, Ramos OM, Leininger S, Liu J, Ferrier DE, Adamska M. 2014. Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Nature 514: 620-3.
doi: 10.1038/nature13881 PMID:25355364

Dees MW, Lysøe E, Nordskog B, Brurberg MB. 2015. Bacterial Communities Associated with Surfaces of Leafy Greens: Shift in Composition and Decrease in Richness over Time. Appl Environ Microbiol 81: 1530-9.
doi: 10.1128/AEM.03470-14 PMID:25527554

Mundra S, Halvorsen R, Kauserud H, Müller E, Vik U, Eidesen PB. 2015. Arctic fungal communities associated with roots of Bistorta vivipara do not respond to the same fine-scale edaphic gradients as the aboveground vegetation. New Phytol 205: 1587-97.
doi: 10.1111/nph.13216 PMID:25483568

Trucchi E, Gratton P, Whittington JD, Cristofari R, Le Maho Y, Stenseth NC, Le Bohec C. 2014. King penguin demography since the last glaciation inferred from genome-wide data. Proc Biol Sci 281.
doi: 10.1098/rspb.2014.0528 PMID:24920481

de Been M, Lanza VF, de Toro M, Scharringa J, Dohmen W, Du Y, Hu J, Lei Y, Li N, Tooming-Klunderud A, Heederik DJ, Fluit AC, Bonten MJ, Willems RJ, de la Cruz F, van Schaik W. 2014. Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages. PLoS Genet 10: e1004776.
doi: 10.1371/journal.pgen.1004776 PMID:25522320

Malde K. 2014. Estimating the information value of polymorphic sites using pooled sequences. BMC Genomics 15: S20.
doi: 10.1186/1471-2164-15-S6-S20 PMID:25571927

Cortesi F, Musilová Z, Stieb SM, Hart NS, Siebeck UE, Malmstrøm M, Tørresen OK, Jentoft S, Cheney KL, Marshall NJ, Carleton KL, Salzburger W. 2015. Ancestral duplications and highly dynamic opsin gene evolution in percomorph fishes. Proc Natl Acad Sci U S A 112: 1493-8.
doi: 10.1073/pnas.1417803112 PMID:25548152

 

2013

Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S, Nowka B, Richter A, Spieck E, Lebedeva E, Loy A, Wagner M, Daims H. 2014. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environ Microbiol 16: 3055-71.
doi: 10.1111/1462-2920.12300 PMID:24118804

Zhao S, Shalchian-Tabrizi K, Klaveness D. 2013. Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Mol Phylogenet Evol 69: 462-8.
doi: 10.1016/j.ympev.2013.08.005 PMID:23973893

Petri A, Pfeil BE, Oxelman B. 2013. Introgressive hybridization between anciently diverged lineages of Silene (Caryophyllaceae). PLoS One 8: e67729.
doi: 10.1371/journal.pone.0067729 PMID:23861793

Berry D, Stecher B, Schintlmeister A, Reichert J, Brugiroux S, Wild B, Wanek W, Richter A, Rauch I, Decker T, Loy A, Wagner M. 2013. Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing. Proc Natl Acad Sci U S A 110: 4720-5.
doi: 10.1073/pnas.1219247110 PMID:23487774

Avershina E, Storrø O, Øien T, Johnsen R, Pope P, Rudi K. 2014. Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children. FEMS Microbiol Ecol 87: 280-90.
doi: 10.1111/1574-6941.12223 PMID:24112053

Boessenkool S, McGlynn G, Epp LS, Taylor D, Pimentel M, Gizaw A, Nemomissa S, Brochmann C, Popp M. 2014. Use of ancient sedimentary DNA as a novel conservation tool for high-altitude tropical biodiversity. Conserv Biol 28: 446-55.
doi: 10.1111/cobi.12195 PMID:24372820

Hjerde E, Pierechod MM, Williamson AK, Bjerga GE, Willassen NP, Smalås AO, Altermark B. 2013. Draft Genome Sequence of the Actinomycete Rhodococcus sp. Strain AW25M09, Isolated from the Hadsel Fjord, Northern Norway. Genome Announc 1: e0005513.
doi: 10.1128/genomeA.00055-13 PMID:23516194

Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ. 2013. The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans. J Exp Zool B Mol Dev Evol 320: 84-93.
doi: 10.1002/jez.b.22485 PMID:23349041

de Muinck EJ, Stenseth NC, Sachse D, Vander Roost J, Rønningen KS, Rudi K, Trosvik P. 2013. Context-dependent competition in a model gut bacterial community. PLoS One 8: e67210.
doi: 10.1371/journal.pone.0067210 PMID:23922635

Panagopoulos I, Gorunova L, Zeller B, Tierens A, Heim S. 2013. Cryptic FUS-ERG fusion identified by RNA-sequencing in childhood acute myeloid leukemia. Oncol Rep 30: 2587-92.
doi: 10.3892/or.2013.2751 PMID:24068373

de Muinck EJ, Lagesen K, Afset JE, Didelot X, Rønningen KS, Rudi K, Stenseth NC, Trosvik P. 2013. Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche. BMC Genomics 14: 81.
doi: 10.1186/1471-2164-14-81 PMID:23384204

Lekva T, Berg JP, Lyle R, Heck A, Ringstad G, Olstad OK, Michelsen AE, Casar-Borota O, Bollerslev J, Ueland T. 2013. Epithelial splicing regulator protein 1 and alternative splicing in somatotroph adenomas. Endocrinology 154: 3331-43.
doi: 10.1210/en.2013-1051 PMID:23825128

Avershina E, Frisli T, Rudi K. 2013. De novo semi-alignment of 16S rRNA gene sequences for deep phylogenetic characterization of next generation sequencing data. Microbes Environ 28: 211-6.
PMID:23603801

Egge E, Bittner L, Andersen T, Audic S, de Vargas C, Edvardsen B. 2013. 454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes. PLoS One 8: e74371.
doi: 10.1371/journal.pone.0074371 PMID:24069303

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2013. Metagenomics in CO2 Monitoring. Energy Procedia 37: 4215-33.
doi: 10.1016/j.egypro.2013.06.324

Lanzén A, Simachew A, Gessesse A, Chmolowska D, Jonassen I, Øvreås L. 2013. Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes. PLoS One 8: e72577.
doi: 10.1371/journal.pone.0072577 PMID:24023625

Lawless N, Foroushani AB, McCabe MS, O'Farrelly C, Lynn DJ. 2013. Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection. PLoS One 8: e57543.
doi: 10.1371/journal.pone.0057543 PMID:23472090

Malmstrøm M, Jentoft S, Gregers TF, Jakobsen KS. 2013. Unraveling the evolution of the Atlantic cod's (Gadus morhua L.) alternative immune strategy. PLoS One 8: e74004.
doi: 10.1371/journal.pone.0074004 PMID:24019946

Markussen T, Sindre H, Jonassen CM, Tengs T, Kristoffersen AB, Ramsell J, Numanovic S, Hjortaas MJ, Christiansen DH, Dale OB, Falk K. 2013. Ultra-deep pyrosequencing of partial surface protein genes from infectious Salmon Anaemia virus (ISAV) suggest novel mechanisms involved in transition to virulence. PLoS One 8: e81571.
doi: 10.1371/journal.pone.0081571 PMID:24303056

McLeod A, Brede DA, Rud I, Axelsson L. 2013. Genome Sequence of Lactobacillus sakei subsp. sakei LS25, a Commercial Starter Culture Strain for Fermented Sausage. Genome Announc 1.
doi: 10.1128/genomeA.00475-13 PMID:23846274

Olsvik PA, Hemre GI, Waagbø R. 2013. Exploring early micronutrient deficiencies in rainbow Trout (Oncorhynchus mykiss) by next-generation sequencing technology--from black box to functional genomics. PLoS One 8: e69461.
doi: 10.1371/journal.pone.0069461 PMID:23894486

Olsvik PA, Vikeså V, Lie KK, Hevrøy EM. 2013. Transcriptional responses to temperature and low oxygen stress in Atlantic salmon studied with next-generation sequencing technology. BMC Genomics 14: 817.
doi: 10.1186/1471-2164-14-817 PMID:24261939

Orr RJ, Stüken A, Murray SA, Jakobsen KS. 2013. Evolution and distribution of saxitoxin biosynthesis in dinoflagellates. Mar Drugs 11: 2814-28.
doi: 10.3390/md11082814 PMID:23966031

Panagopoulos I, Micci F, Thorsen J, Haugom L, Buechner J, Kerndrup G, Tierens A, Zeller B, Heim S. 2013. Fusion of ZMYND8 and RELA genes in acute erythroid leukemia. PLoS One 8: e63663.
doi: 10.1371/journal.pone.0063663 PMID:23667654

Star B, Haverkamp TH, Jentoft S, Jakobsen KS. 2013. Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location. BMC Microbiol 13: 248.
doi: 10.1186/1471-2180-13-248 PMID:24206635

Stokke R, Hocking WP, Steinsbu BO, Steen IH. 2013. Complete Genome Sequence of the Thermophilic and Facultatively Chemolithoautotrophic Sulfate Reducer Archaeoglobus sulfaticallidus Strain PM70-1T. Genome Announc 1.
doi: 10.1128/genomeA.00406-13 PMID:23833130

Vik U, Logares R, Blaalid R, Halvorsen R, Carlsen T, Bakke I, Kolstø AB, Økstad OA, Kauserud H. 2013. Different bacterial communities in ectomycorrhizae and surrounding soil. Sci Rep 3: 3471.
doi: 10.1038/srep03471 PMID:24326907

Orr RJ, Stüken A, Murray SA, Jakobsen KS. 2013. Evolutionary acquisition and loss of saxitoxin biosynthesis in dinoflagellates: the second "core" gene, sxtG. Appl Environ Microbiol 79: 2128-36.
doi: 10.1128/AEM.03279-12 PMID:23335767

Panagopoulos I, Thorsen J, Gorunova L, Micci F, Haugom L, Davidson B, Heim S. 2013. RNA sequencing identifies fusion of the EWSR1 and YY1 genes in mesothelioma with t(14;22)(q32;q12). Genes Chromosomes Cancer 52: 733-40.
doi: 10.1002/gcc.22068 PMID:23630070

Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L. 2013. Substantial loss of conserved and gain of novel MicroRNA families in flatworms. Mol Biol Evol 30: 2619-28.
doi: 10.1093/molbev/mst155 PMID:24025793

Uzelac G, Kojic M, Lozo J, Aleksandrzak-Piekarczyk T, Gabrielsen C, Kristensen T, Nes IF, Diep DB, Topisirovic L. 2013. A Zn-dependent metallopeptidase is responsible for sensitivity to LsbB, a class II leaderless bacteriocin of Lactococcus lactis subsp. lactis BGMN1-5. J Bacteriol 195: 5614-21.
doi: 10.1128/JB.00859-13 PMID:24123824

Müller AL, de Rezende JR, Hubert CR, Kjeldsen KU, Lagkouvardos I, Berry D, Jørgensen BB, Loy A. 2014. Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents. ISME J 8: 1153-65.
doi: 10.1038/ismej.2013.225 PMID:24351936

Brembu T, Winge P, Tooming-Klunderud A, Nederbragt AJ, Jakobsen KS, Bones AM. 2014. The chloroplast genome of the diatom Seminavis robusta: new features introduced through multiple mechanisms of horizontal gene transfer. Mar Genomics 16: 17-27.
doi: 10.1016/j.margen.2013.12.002 PMID:24365712

Liu B, Frostegård A, Shapleigh JP. 2013. Draft genome sequences of five strains in the genus thauera. Genome Announc 1.
doi: 10.1128/genomeA.00052-12 PMID:23405361

Panagopoulos I, Thorsen J, Gorunova L, Haugom L, Bjerkehagen B, Davidson B, Heim S, Micci F. 2013. Fusion of the ZC3H7B and BCOR genes in endometrial stromal sarcomas carrying an X;22-translocation. Genes Chromosomes Cancer 52: 610-8.
doi: 10.1002/gcc.22057 PMID:23580382

Yamamoto ML, Maier I, Dang AT, Berry D, Liu J, Ruegger PM, Yang JI, Soto PA, Presley LL, Reliene R, Westbrook AM, Wei B, Loy A, Chang C, Braun J, Borneman J, Schiestl RH. 2013. Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity. Cancer Res 73: 4222-32.
doi: 10.1158/0008-5472.CAN-13-0022 PMID:23860718

Eme L, Reigstad LJ, Spang A, Lanzén A, Weinmaier T, Rattei T, Schleper C, Brochier-Armanet C. 2013. Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota. Res Microbiol 164: 425-38.
doi: 10.1016/j.resmic.2013.02.006 PMID:23470515

Lindner DL, Carlsen T, Henrik Nilsson R, Davey M, Schumacher T, Kauserud H. 2013. Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi. Ecol Evol 3: 1751-64.
doi: 10.1002/ece3.586 PMID:23789083

Olsvik PA, Berg V, Lyche JL. 2013. Transcriptional profiling in burbot (Lota lota) from Lake Mjøsa--a Norwegian Lake contaminated by several organic pollutants. Ecotoxicol Environ Saf 92: 94-103.
doi: 10.1016/j.ecoenv.2013.02.019 PMID:23582132

Blaalid R, Kumar S, Nilsson RH, Abarenkov K, Kirk PM, Kauserud H. 2013. ITS1 versus ITS2 as DNA metabarcodes for fungi. Mol Ecol Resour 13: 218-24.
doi: 10.1111/1755-0998.12065 PMID:23350562

Peña-Diaz J, Hegre SA, Anderssen E, Aas PA, Mjelle R, Gilfillan GD, Lyle R, Drabløs F, Krokan HE, Sætrom P. 2013. Transcription profiling during the cell cycle shows that a subset of Polycomb-targeted genes is upregulated during DNA replication. Nucleic Acids Res 41: 2846-56.
doi: 10.1093/nar/gks1336 PMID:23325852

Hagen IJ, Billing AM, Rønning B, Pedersen SA, Pärn H, Slate J, Jensen H. 2013. The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus). Mol Ecol Resour 13: 429-39.
doi: 10.1111/1755-0998.12088 PMID:23480404

Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS. 2013. From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains. Appl Environ Microbiol 79: 6803-12.
doi: 10.1128/AEM.01455-13 PMID:23995927

Yao F, Vik U, Brysting AK, Carlsen T, Halvorsen R, Kauserud H. 2013. Substantial compositional turnover of fungal communities in an alpine ridge-to-snowbed gradient. Mol Ecol 22: 5040-52.
doi: 10.1111/mec.12437 PMID:23962113

Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ. 2013. Profiling microRNA expression in bovine alveolar macrophages using RNA-seq. Vet Immunol Immunopathol 155: 238-44.
doi: 10.1016/j.vetimm.2013.08.004 PMID:24021155

Liang Z, Demko V, Wilson RC, Johnson KA, Ahmad R, Perroud PF, Quatrano R, Zhao S, Shalchian-Tabrizi K, Otegui MS, Olsen OA, Johansen W. 2013. The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. Plant J 75: 742-54.
doi: 10.1111/tpj.12235 PMID:23663131

Urich T, Lanzén A, Stokke R, Pedersen RB, Bayer C, Thorseth IH, Schleper C, Steen IH, Ovreas L. 2014. Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics. Environ Microbiol 16: 2699-710.
doi: 10.1111/1462-2920.12283 PMID:24112684

Præsteng KE, Pope PB, Cann IK, Mackie RI, Mathiesen SD, Folkow LP, Eijsink VG, Sundset MA. 2013. Probiotic dosing of Ruminococcus flavefaciens affects rumen microbiome structure and function in reindeer. Microb Ecol 66: 840-9.
doi: 10.1007/s00248-013-0279-z PMID:23959114

 

2012

Logares R, Lindström ES, Langenheder S, Logue JB, Paterson H, Laybourn-Parry J, Rengefors K, Tranvik L, Bertilsson S. 2013. Biogeography of bacterial communities exposed to progressive long-term environmental change. ISME J 7: 937-48.
doi: 10.1038/ismej.2012.168 PMID:23254515

Sokol L, Cripe L, Kantarjian H, Sekeres MA, Parmar S, Greenberg P, Goldberg SL, Bhushan V, Shammo J, Hohl R, Verma A, Garcia-Manero G, Li YP, Lowe A, Zhu J, List AF. 2013. Randomized, dose-escalation study of the p38α MAPK inhibitor SCIO-469 in patients with myelodysplastic syndrome. Leukemia 27: 977-80.
doi: 10.1038/leu.2012.264 PMID:23032694

Voso MT, Fabiani E, Fianchi L, Falconi G, Criscuolo M, Santangelo R, Chiusolo P, Betti S, D'Alo' F, Hohaus S, De Stefano V, Leone G. 2013. Mutations of epigenetic regulators and of the spliceosome machinery in therapy-related myeloid neoplasms and in acute leukemias evolved from chronic myeloproliferative diseases. Leukemia 27: 982-5.
doi: 10.1038/leu.2012.267 PMID:22964944

Micci F, Thorsen J, Panagopoulos I, Nyquist KB, Zeller B, Tierens A, Heim S. 2013. High-throughput sequencing identifies an NFIA/CBFA2T3 fusion gene in acute erythroid leukemia with t(1;16)(p31;q24). Leukemia 27: 980-2.
doi: 10.1038/leu.2012.266 PMID:23032695

Moen B, Rudi K, Bore E, Langsrud S. 2012. Subminimal inhibitory concentrations of the disinfectant benzalkonium chloride select for a tolerant subpopulation of Escherichia coli with inheritable characteristics. Int J Mol Sci 13: 4101-23.
doi: 10.3390/ijms13044101 PMID:22605968

Rudi K, Moen B, Sekelja M, Frisli T, Lee MR. 2012. An eight-year investigation of bovine livestock fecal microbiota. Vet Microbiol 160: 369-77.
doi: 10.1016/j.vetmic.2012.06.003 PMID:22749759

Heggeset TM, Krog A, Balzer S, Wentzel A, Ellingsen TE, Brautaset T. 2012. Genome sequence of thermotolerant Bacillus methanolicus: features and regulation related to methylotrophy and production of L-lysine and L-glutamate from methanol. Appl Environ Microbiol 78: 5170-81.
doi: 10.1128/AEM.00703-12 PMID:22610424

Farup PG, Jacobsen M, Ligaarden SC, Rudi K. 2012. Probiotics, symptoms, and gut microbiota: what are the relations? A randomized controlled trial in subjects with irritable bowel syndrome. Gastroenterol Res Pract 2012: 214102.
doi: 10.1155/2012/214102 PMID:22899904

Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H. 2012. Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches. J Microbiol Methods 91: 106-13.
doi: 10.1016/j.mimet.2012.07.017 PMID:22849829

Fortunato S, Adamski M, Bergum B, Guder C, Jordal S, Leininger S, Zwafink C, Rapp HT, Adamska M. 2012. Genome-wide analysis of the sox family in the calcareous sponge Sycon ciliatum: multiple genes with unique expression patterns. Evodevo 3: 14.
doi: 10.1186/2041-9139-3-14 PMID:22824100

Bellemain E, Davey ML, Kauserud H, Epp LS, Boessenkool S, Coissac E, Geml J, Edwards M, Willerslev E, Gussarova G, Taberlet P, Haile J, Brochmann C. 2013. Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environ Microbiol 15: 1176-89.
doi: 10.1111/1462-2920.12020 PMID:23171292

Bråte J, Krabberød AK, Dolven JK, Ose RF, Kristensen T, Bjørklund KR, Shalchian-Tabrizi K. 2012. Radiolaria associated with large diversity of marine alveolates. Protist 163: 767-77.
doi: 10.1016/j.protis.2012.04.004 PMID:22658831

Carlsen T, Aas AB, Lindner D, Vrålstad T, Schumacher T, Kauserud H. 2012. Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?. Fungal Ecology 5: 747-9.
doi: 10.1016/j.funeco.2012.06.003

Epp LS, Boessenkool S, Bellemain EP, Haile J, Esposito A, Riaz T, Erséus C, Gusarov VI, Edwards ME, Johnsen A, Stenøien HK, Hassel K, Kauserud H, Yoccoz NG, Bråthen KA, Willerslev E, Taberlet P, Coissac E, Brochmann C. 2012. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol Ecol 21: 1821-33.
doi: 10.1111/j.1365-294X.2012.05537.x PMID:22486821

Espelund M, Minge MA, Gabrielsen TM, Nederbragt AJ, Shalchian-Tabrizi K, Otis C, Turmel M, Lemieux C, Jakobsen KS. 2012. Genome fragmentation is not confined to the peridinin plastid in dinoflagellates. PLoS One 7: e38809.
doi: 10.1371/journal.pone.0038809 PMID:22719952

Frisli T, Haverkamp TH, Jakobsen KS, Stenseth NC, Rudi K. 2013. Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data. J Appl Microbiol 114: 141-51.
doi: 10.1111/jam.12035 PMID:23039191

Hamfjord J, Stangeland AM, Hughes T, Skrede ML, Tveit KM, Ikdahl T, Kure EH. 2012. Differential expression of miRNAs in colorectal cancer: comparison of paired tumor tissue and adjacent normal mucosa using high-throughput sequencing. PLoS One 7: e34150.
doi: 10.1371/journal.pone.0034150 PMID:22529906

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2012. Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea. BMC Microbiol 12: 203.
doi: 10.1186/1471-2180-12-203 PMID:22966776

Jaeschke A, Jørgensen SL, Bernasconi SM, Pedersen RB, Thorseth IH, Früh-Green GL. 2012. Microbial diversity of Loki's Castle black smokers at the Arctic Mid-Ocean Ridge. Geobiology 10: 548-61.
doi: 10.1111/gbi.12009 PMID:23006788

Ougland R, Lando D, Jonson I, Dahl JA, Moen MN, Nordstrand LM, Rognes T, Lee JT, Klungland A, Kouzarides T, Larsen E. 2012. ALKBH1 is a histone H2A dioxygenase involved in neural differentiation. Stem Cells 30: 2672-82.
doi: 10.1002/stem.1228 PMID:22961808

Radax R, Rattei T, Lanzen A, Bayer C, Rapp HT, Urich T, Schleper C. 2012. Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. Environ Microbiol 14: 1308-24.
doi: 10.1111/j.1462-2920.2012.02714.x PMID:22364353

Sorte H, Mørkrid L, Rødningen O, Kulseth MA, Stray-Pedersen A, Matthijs G, Race V, Houge G, Fiskerstrand T, Bjurulf B, Lyle R, Prescott T. 2012. Severe ALG8-CDG (CDG-Ih) associated with homozygosity for two novel missense mutations detected by exome sequencing of candidate genes. Eur J Med Genet 55: 196-202.
doi: 10.1016/j.ejmg.2012.01.003 PMID:22306853

Squadrito ML, Pucci F, Magri L, Moi D, Gilfillan GD, Ranghetti A, Casazza A, Mazzone M, Lyle R, Naldini L, De Palma M. 2012. miR-511-3p modulates genetic programs of tumor-associated macrophages. Cell Rep 1: 141-54.
doi: 10.1016/j.celrep.2011.12.005 PMID:22832163

Roalkvam I, Dahle H, Chen Y, Jørgensen SL, Haflidason H, Steen IH. 2012. Fine-Scale Community Structure Analysis of ANME in Nyegga Sediments with High and Low Methane Flux. Front Microbiol 3: 216.
doi: 10.3389/fmicb.2012.00216 PMID:22715336

Gabrielsen C, Brede DA, Hernández PE, Nes IF, Diep DB. 2012. Genome sequence of the bacteriocin-producing strain Lactococcus garvieae DCC43. J Bacteriol 194: 6976-7.
doi: 10.1128/JB.01864-12 PMID:23209230

Jørgensen MH, Lagesen K, Mable BK, Brysting AK. 2012. Using high-throughput sequencing to investigate the evolution of self-incompatibility genes in the Brassicaceae: strategies and challenges. Plant Ecology & Diversity 5: 473-84.
doi: 10.1080/17550874.2012.748098

Straub T, Zabel A, Gilfillan GD, Feller C, Becker PB. 2013. Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq. Genome Res 23: 473-85.
doi: 10.1101/gr.146407.112 PMID:23233545

Robertson AB, Dahl JA, Ougland R, Klungland A. 2012. Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads. Nat Protoc 7: 340-50.
doi: 10.1038/nprot.2011.443 PMID:22281869

Undlien DE. 2012. Individuell genomsekvensering. Tidsskr Nor Laegeforen 132: 264.
doi: 10.4045/tidsskr.11.1490 PMID:22314723

Zhao S, Burki F, Bråte J, Keeling PJ, Klaveness D, Shalchian-Tabrizi K. 2012. Collodictyon--an ancient lineage in the tree of eukaryotes. Mol Biol Evol 29: 1557-68.
doi: 10.1093/molbev/mss001 PMID:22319147

Bengtsson MM, Sjøtun K, Lanzén A, Ovreås L. 2012. Bacterial diversity in relation to secondary production and succession on surfaces of the kelp Laminaria hyperborea. ISME J 6: 2188-98.
doi: 10.1038/ismej.2012.67 PMID:22763650

Stokke R, Roalkvam I, Lanzen A, Haflidason H, Steen IH. 2012. Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments. Environ Microbiol 14: 1333-46.
doi: 10.1111/j.1462-2920.2012.02716.x PMID:22404914

Boumans L, Baumann RW. 2012. Amphinemura palmeni is a valid Holarctic stonefly species (Plecoptera: Nemouridae). Zootaxa 3537: 59-75.

Sogge H, Rohrlack T, Rounge TB, Sønstebø JH, Tooming-Klunderud A, Kristensen T, Jakobsen KS. 2013. Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix freshwater strains. Appl Environ Microbiol 79: 508-15.
doi: 10.1128/AEM.02417-12 PMID:23124237

Sridhar S, Sharma A, Kongshaug H, Nilsen F, Jonassen I. 2012. Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity. BMC Genomics 13: 598.
doi: 10.1186/1471-2164-13-598 PMID:23131096

Bittner L, Gobet A, Audic S, Romac S, Egge ES, Santini S, Ogata H, Probert I, Edvardsen B, de Vargas C. 2013. Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay. Mol Ecol 22: 87-101.
doi: 10.1111/mec.12108 PMID:23163508

Gilfillan GD, Hughes T, Sheng Y, Hjorthaug HS, Straub T, Gervin K, Harris JR, Undlien DE, Lyle R. 2012. Limitations and possibilities of low cell number ChIP-seq. BMC Genomics 13: 645.
doi: 10.1186/1471-2164-13-645 PMID:23171294

Davey ML, Heegaard E, Halvorsen R, Kauserud H, Ohlson M. 2013. Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient. Mol Ecol 22: 368-83.
doi: 10.1111/mec.12122 PMID:23190367

Jorgensen SL, Hannisdal B, Lanzén A, Baumberger T, Flesland K, Fonseca R, Ovreås L, Steen IH, Thorseth IH, Pedersen RB, Schleper C. 2012. Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge. Proc Natl Acad Sci U S A 109: E2846-55.
doi: 10.1073/pnas.1207574109 PMID:23027979

Davey ML, Heegaard E, Halvorsen R, Ohlson M, Kauserud H. 2012. Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing. New Phytol 195: 844-56.
doi: 10.1111/j.1469-8137.2012.04215.x PMID:22758207

Leidenroth A, Sorte HS, Gilfillan G, Ehrlich M, Lyle R, Hewitt JE. 2012. Diagnosis by sequencing: correction of misdiagnosis from FSHD2 to LGMD2A by whole-exome analysis. Eur J Hum Genet 20: 999-1003.
doi: 10.1038/ejhg.2012.42 PMID:22378277

Tveit A, Schwacke R, Svenning MM, Urich T. 2013. Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms. ISME J 7: 299-311.
doi: 10.1038/ismej.2012.99 PMID:22955232

Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS. 2012. Alterations of microbiota in urine from women with interstitial cystitis. BMC Microbiol 12: 205.
doi: 10.1186/1471-2180-12-205 PMID:22974186

Nordstrand LM, Furu K, Paulsen J, Rognes T, Klungland A. 2012. Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nucleic Acids Res 40: 10950-63.
doi: 10.1093/nar/gks839 PMID:22965116

 

2011

Høvik H, Yu WH, Olsen I, Chen T. 2012. Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83. J Bacteriol 194: 100-14.
doi: 10.1128/JB.06385-11 PMID:22037400

Pester M, Rattei T, Flechl S, Gröngröft A, Richter A, Overmann J, Reinhold-Hurek B, Loy A, Wagner M. 2012. amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions. Environ Microbiol 14: 525-39.
doi: 10.1111/j.1462-2920.2011.02666.x PMID:22141924

Shalchian-Tabrizi K, Reier-Røberg K, Ree DK, Klaveness D, Bråte J. 2011. Marine-freshwater colonizations of haptophytes inferred from phylogeny of environmental 18S rDNA sequences. J Eukaryot Microbiol 58: 315-8.
doi: 10.1111/j.1550-7408.2011.00547.x PMID:21518078

Sodeland M, Grove H, Kent M, Taylor S, Svendsen M, Hayes BJ, Lien S. 2011. Molecular characterization of a long range haplotype affecting protein yield and mastitis susceptibility in Norwegian Red cattle. BMC Genet 12: 70.
doi: 10.1186/1471-2156-12-70 PMID:21835015

Klaveness D, Bråte J, Patil V, Shalchian-Tabrizi K, Kluge R, Gislerød HR, Jakobsen KS. 2011. The 18S and 28S rDNA identity and phylogeny of the common lotic chrysophyte. European Journal of Phycology 46: 282-91.
doi: 10.1080/09670262.2011.598950

Blaalid R, Carlsen T, Kumar S, Halvorsen R, Ugland KI, Fontana G, Kauserud H. 2011. Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing. Mol Ecol 21: 1897-908.
doi: 10.1111/j.1365-294X.2011.05214.x

Kauserud H, Kumar S, Brysting AK, Nordén J, Carlsen T. 2012. High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples. Mycorrhiza 22: 309-15.
doi: 10.1007/s00572-011-0403-1 PMID:21779811

Boessenkool S, Epp LS, Haile J, Bellemain E, Edwards M, Coissac E, Willerslev E, Brochmann C. 2012. Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA. Mol Ecol 21: 1806-15.
doi: 10.1111/j.1365-294X.2011.05306.x PMID:21988749

Lindqvist M, Isaksson B, Grub C, Jonassen TØ, Hällgren A. 2012. Detection and characterisation of SCCmec remnants in multiresistant methicillin-susceptible Staphylococcus aureus causing a clonal outbreak in a Swedish county. Eur J Clin Microbiol Infect Dis 31: 141-7.
doi: 10.1007/s10096-011-1286-y PMID:21590357

Selmer KK, Gilfillan GD, Strømme P, Lyle R, Hughes T, Hjorthaug HS, Brandal K, Nakken S, Misceo D, Egeland T, Munthe LA, Braekken SK, Undlien DE. 2012. A mild form of Mucopolysaccharidosis IIIB diagnosed with targeted next-generation sequencing of linked genomic regions. Eur J Hum Genet 20: 58-63.
doi: 10.1038/ejhg.2011.126 PMID:21712855

Danielsson M, Lundén K, Elfstrand M, Hu J, Zhao T, Arnerup J, Ihrmark K, Swedjemark G, Borg-Karlson AK, Stenlid J. 2011. Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection. BMC Plant Biol 11: 154.
doi: 10.1186/1471-2229-11-154 PMID:22067529

Gabrielsen TM, Minge MA, Espelund M, Tooming-Klunderud A, Patil V, Nederbragt AJ, Otis C, Turmel M, Shalchian-Tabrizi K, Lemieux C, Jakobsen KS. 2011. Genome evolution of a tertiary dinoflagellate plastid. PLoS One 6: e19132.
doi: 10.1371/journal.pone.0019132 PMID:21541332

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG. 2011. A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments. BMC Microbiol 11: 221.
doi: 10.1186/1471-2180-11-221 PMID:21970369

Kumar S, Carlsen T, Mevik BH, Enger P, Blaalid R, Shalchian-Tabrizi K, Kauserud H. 2011. CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics 12: 182.
doi: 10.1186/1471-2105-12-182 PMID:21599929

Siddiqui H, Nederbragt AJ, Lagesen K, Jeansson SL, Jakobsen KS. 2011. Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons. BMC Microbiol 11: 244.
doi: 10.1186/1471-2180-11-244 PMID:22047020

Stüken A, Orr RJ, Kellmann R, Murray SA, Neilan BA, Jakobsen KS. 2011. Discovery of nuclear-encoded genes for the neurotoxin saxitoxin in dinoflagellates. PLoS One 6: e20096.
doi: 10.1371/journal.pone.0020096 PMID:21625593

Kotlar HK, Lewin A, Johansen J, Throne-Holst M, Haverkamp T, Markussen S, Winnberg A, Ringrose P, Aakvik T, Ryeng E, Jakobsen K, Drabløs F, Valla S. 2011. High coverage sequencing of DNA from microorganisms living in an oil reservoir 2.5 kilometres subsurface. Environ Microbiol Rep 3: 674-81.
doi: 10.1111/j.1758-2229.2011.00279.x PMID:23761356

Logue JB, Langenheder S, Andersson AF, Bertilsson S, Drakare S, Lanzén A, Lindström ES. 2012. Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships. ISME J 6: 1127-36.
doi: 10.1038/ismej.2011.184 PMID:22170419

Hildahl J, Sandvik GK, Edvardsen RB, Fagernes C, Norberg B, Haug TM, Weltzien FA. 2011. Identification and gene expression analysis of three GnRH genes in female Atlantic cod during puberty provides insight into GnRH variant gene loss in fish. Gen Comp Endocrinol 172: 458-67.
doi: 10.1016/j.ygcen.2011.04.010 PMID:21521645

Berry D, Ben Mahfoudh K, Wagner M, Loy A. 2011. Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Appl Environ Microbiol 77: 7846-9.
doi: 10.1128/AEM.05220-11 PMID:21890669

Roalkvam I, Jørgensen SL, Chen Y, Stokke R, Dahle H, Hocking WP, Lanzén A, Haflidason H, Steen IH. 2011. New insight into stratification of anaerobic methanotrophs in cold seep sediments. FEMS Microbiol Ecol 78: 233-43.
doi: 10.1111/j.1574-6941.2011.01153.x PMID:21676010

Lanzén A, Jørgensen SL, Bengtsson MM, Jonassen I, Øvreås L, Urich T. 2011. Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA. FEMS Microbiol Ecol 77: 577-89.
doi: 10.1111/j.1574-6941.2011.01138.x PMID:21627670

Hildahl J, Sandvik GK, Edvardsen RB, Norberg B, Haug TM, Weltzien FA. 2011. Four gonadotropin releasing hormone receptor genes in Atlantic cod are differentially expressed in the brain and pituitary during puberty. Gen Comp Endocrinol 173: 333-45.
doi: 10.1016/j.ygcen.2011.06.002 PMID:21704626

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS. 2011. The genome sequence of Atlantic cod reveals a unique immune system. Nature 477: 207-10.
doi: 10.1038/nature10342 PMID:21832995

 

2010

Løvoll M, Wiik-Nielsen J, Grove S, Wiik-Nielsen CR, Kristoffersen AB, Faller R, Poppe T, Jung J, Pedamallu CS, Nederbragt AJ, Meyerson M, Rimstad E, Tengs T. 2010. A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS). Virol J 7: 309.
doi: 10.1186/1743-422X-7-309 PMID:21067578

Lukacs MF, Harstad H, Bakke HG, Beetz-Sargent M, McKinnel L, Lubieniecki KP, Koop BF, Grimholt U. 2010. Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon. BMC Genomics 11: 154.
doi: 10.1186/1471-2164-11-154 PMID:20205726

Nederbragt AJ, Rounge TB, Kausrud KL, Jakobsen KS. 2010. Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads. Sequencing 2010: 1-12.
doi: 10.1155/2010/782465

Wetten OF, Nederbragt AJ, Wilson RC, Jakobsen KS, Edvardsen RB, Andersen Ø. 2010. Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters. BMC Evol Biol 10: 315.
doi: 10.1186/1471-2148-10-315 PMID:20961401

Stüken A, Jakobsen KS. 2010. The cylindrospermopsin gene cluster of Aphanizomenon sp. strain 10E6: organization and recombination. Microbiology 156: 2438-51.
doi: 10.1099/mic.0.036988-0 PMID:20430808

Bråte J, Logares R, Berney C, Ree DK, Klaveness D, Jakobsen KS, Shalchian-Tabrizi K. 2010. Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. ISME J 4: 1144-53.
doi: 10.1038/ismej.2010.39 PMID:20393574

 

2009

Jørgensen H, Degnes KF, Dikiy A, Fjaervik E, Klinkenberg G, Zotchev SB. 2010. Insights into the evolution of macrolactam biosynthesis through cloning and comparative analysis of the biosynthetic gene cluster for a novel macrocyclic lactam, ML-449. Appl Environ Microbiol 76: 283-93.
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Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K. 2009. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol Evol 1: 231-8.
doi: 10.1093/gbe/evp022 PMID:20333193

Rounge TB, Rohrlack T, Nederbragt AJ, Kristensen T, Jakobsen KS. 2009. A genome-wide analysis of nonribosomal peptide synthetase gene clusters and their peptides in a Planktothrix rubescens strain. BMC Genomics 10: 396.
doi: 10.1186/1471-2164-10-396 PMID:19706155

Tengs T, Zhang H, Holst-Jensen A, Bohlin J, Butenko MA, Kristoffersen AB, Sorteberg HG, Berdal KG. 2009. Characterization of unknown genetic modifications using high throughput sequencing and computational subtraction. BMC Biotechnol 9: 87.
doi: 10.1186/1472-6750-9-87 PMID:19814792

Jørgensen H, Degnes KF, Sletta H, Fjaervik E, Dikiy A, Herfindal L, Bruheim P, Klinkenberg G, Bredholt H, Nygård G, Døskeland SO, Ellingsen TE, Zotchev SB. 2009. Biosynthesis of macrolactam BE-14106 involves two distinct PKS systems and amino acid processing enzymes for generation of the aminoacyl starter unit. Chem Biol 16: 1109-21.
doi: 10.1016/j.chembiol.2009.09.014 PMID:19875084

Published Mar. 21, 2017 12:07 PM - Last modified Mar. 21, 2017 12:07 PM